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ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytic cup
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Accession:GO:0001891 term browser browse the term
Definition:An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome.



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phagocytic cup term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 located_in ISS
ISO
GO_REF:0000024
(PMID:16908670)
Alzheimers_University_of_Toronto
RGD
PMID:16908670 GO_REF:0000024 NCBI chr 7:9,691,452...9,711,466 JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase located_in ISO (PMID:23100514) RGD PMID:23100514 NCBI chr13:71,223,902...71,319,770 JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 located_in IEA
ISO
GO_REF:0000107
(PMID:17960134)
Ensembl
RGD
PMID:17960134 GO_REF:0000107 NCBI chr 7:108,293,681...108,365,892 JBrowse link
G Ager advanced glycosylation end product-specific receptor located_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:35974093)
Ensembl
UniProt
RGD
PMID:35974093 GO_REF:0000024 GO_REF:0000107 NCBI chr20:4,152,758...4,155,956 JBrowse link
G Aif1 allograft inflammatory factor 1 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000044
(PMID:10934045), (PMID:14756805)
UniProt
RGD
PMID:10934045 PMID:14756805 GO_REF:0000024 GO_REF:0000044 NCBI chr20:3,651,435...3,657,341 JBrowse link
G Anxa1 annexin A1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:227,287,713...227,306,739 JBrowse link
G Arhgap12 Rho GTPase activating protein 12 located_in ISO (PMID:26465210) RGD PMID:26465210 NCBI chr17:51,588,810...51,702,417 JBrowse link
G Arhgap25 Rho GTPase activating protein 25 located_in
is_active_in
ISO
IBA
(PMID:26465210)
GO_REF:0000033
RGD
GO_Central
PMID:26465210 GO_REF:0000033 NCBI chr 4:119,896,844...119,974,982 JBrowse link
G Bin2 bridging integrator 2 located_in IEA
ISS
ISO
IBA
GO_REF:0000107
GO_REF:0000024
(PMID:23285027)
GO_REF:0000033
Ensembl
UniProt
RGD
GO_Central
PMID:23285027 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:131,742,001...131,768,208 JBrowse link
G Cdc42se2 CDC42 small effector 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:38,836,549...38,905,056 JBrowse link
G Cela1 chymotrypsin like elastase 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:131,773,161...131,786,300 JBrowse link
G Clec4e C-type lectin domain family 4, member E located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:158,292,624...158,298,607 JBrowse link
G Coro1a coronin 1A located_in ISO (PMID:17442961) RGD PMID:17442961 NCBI chr 1:181,295,561...181,300,566 JBrowse link
G Dnm2 dynamin 2 IDA RGD PMID:12802072 RGD:9685290 NCBI chr 8:28,254,344...28,336,297 JBrowse link
G Irgm immunity-related GTPase M located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 located_in ISO (PMID:14756805) RGD PMID:14756805 NCBI chr15:56,846,375...56,954,090 JBrowse link
G Megf10 multiple EGF-like domains 10 located_in ISO (PMID:17205124)
(PMID:19915564)
RGD PMID:17205124 PMID:19915564 NCBI chr18:50,605,231...50,755,441 JBrowse link
G Myo1g myosin IG located_in ISO (PMID:23038771), (PMID:24310084) RGD PMID:23038771 PMID:24310084 NCBI chr14:81,386,701...81,401,843 JBrowse link
G Pear1 platelet endothelial aggregation receptor 1 located_in ISO (PMID:19915564) RGD PMID:19915564 NCBI chr 2:173,206,298...173,234,106 JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:9,048,135...9,076,751 JBrowse link
G Rab11fip2 RAB11 family interacting protein 2 located_in
is_active_in
ISO
IBA
(PMID:30883606)
GO_REF:0000033
RGD
GO_Central
PMID:30883606 GO_REF:0000033 NCBI chr 1:268,908,825...269,080,691 JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25568335)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25568335 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:105,246,712...105,382,973 JBrowse link
G Rac1 Rac family small GTPase 1 located_in ISO (PMID:10934045) RGD PMID:10934045 NCBI chr12:16,150,411...16,170,864 JBrowse link
G Rack1 receptor for activated C kinase 1 located_in ISO
ISS
(PMID:21347310)
GO_REF:0000024
RGD
UniProt
PMID:21347310 GO_REF:0000024 NCBI chr10:33,668,560...33,676,031 JBrowse link
G Sh3bp1 SH3-domain binding protein 1 located_in ISS
ISO
GO_REF:0000024
(PMID:26465210)
UniProt
RGD
PMID:26465210 GO_REF:0000024 NCBI chr 7:110,457,626...110,470,201 JBrowse link
G Snx5 sorting nexin 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:152,075,258...152,094,508 JBrowse link
G Syt11 synaptotagmin 11 located_in IEA
ISO
GO_REF:0000107
(PMID:23303671)
Ensembl
RGD
PMID:23303671 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354 JBrowse link
G Ticam2 TIR domain containing adaptor molecule 2 located_in ISO (PMID:30883606) RGD PMID:30883606 NCBI chr18:39,289,902...39,311,462 JBrowse link
G Tlr4 toll-like receptor 4 located_in ISO
IEA
(PMID:30883606)
GO_REF:0000107
RGD
Ensembl
PMID:30883606 GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882 JBrowse link
G Tnf tumor necrosis factor located_in ISO (PMID:16282525) RGD PMID:16282525 NCBI chr20:3,626,685...3,629,303 JBrowse link
G Trip10 thyroid hormone receptor interactor 10 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:2,219,695...2,234,771 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      phagocytic cup 31
        phagocytic cup base 0
        phagocytic cup lip 0
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      membrane 10474
        plasma membrane 6601
          phagocytic cup 31
            phagocytic cup base 0
            phagocytic cup lip 0
paths to the root