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ONTOLOGY REPORT - ANNOTATIONS

Term:phagocytic cup
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Accession:GO:0001891 term browser browse the term
Definition:An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome.


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phagocytic cup term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 located_in ISS
ISO		 GO_REF:0000024
(MGI:3662940|PMID:16908670)		 Alzheimers_University_of_Toronto
RGD		 PMID:16908670 GO_REF:0000024 MGI:3662940 NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase located_in ISO (MGI:5449460|PMID:23100514) RGD PMID:23100514 MGI:5449460 NCBI chr13:68,673,702...68,839,742
Ensembl chr13:68,673,722...68,839,742 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 located_in ISO (MGI:3764740|PMID:17960134) RGD PMID:17960134 MGI:3764740 NCBI chr 7:106,404,844...106,476,902
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Aif1 allograft inflammatory factor 1 located_in ISS
ISO		 GO_REF:0000024
(MGI:3042556|PMID:14756805), (MGI:5315376|PMID:10934045)		 UniProt
RGD		 PMID:10934045 PMID:14756805 GO_REF:0000024 MGI:3042556 MGI:5315376 NCBI chr20:3,646,784...3,652,670
Ensembl chr20:3,646,777...3,652,668 		JBrowse link
G Anxa1 annexin A1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Arhgap12 Rho GTPase activating protein 12 located_in ISO (PMID:26465210) RGD PMID:26465210 NCBI chr17:51,588,810...51,702,417
Ensembl chr17:51,588,842...51,702,080 		JBrowse link
G Arhgap25 Rho GTPase activating protein 25 located_in
is_active_in		 ISO
IBA		 (PMID:26465210)
PMID:21873635		 RGD PMID:26465210 PMID:21873635 RGD:13792537 NCBI chr 4:119,896,844...119,974,982
Ensembl chr 4:119,896,844...119,974,982 		JBrowse link
G Bin2 bridging integrator 2 colocalizes_with ISO
ISS
IBA		 (PMID:23285027)
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:23285027 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:131,742,001...131,768,208
Ensembl chr 7:131,742,002...131,786,285 		JBrowse link
G Cdc42se2 CDC42 small effector 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:38,836,549...38,905,056
Ensembl chr10:38,836,555...38,905,059 		JBrowse link
G Clec4e C-type lectin domain family 4, member E located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:156,606,927...156,612,911
Ensembl chr 4:156,607,614...156,612,767 		JBrowse link
G Coro1a coronin 1A located_in ISO (PMID:17442961) RGD PMID:17442961 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Dnm2 dynamin 2 IDA RGD PMID:12802072 RGD:9685290 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Irgm immunity-related GTPase M located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 located_in ISO (MGI:3042556|PMID:14756805) RGD PMID:14756805 MGI:3042556 NCBI chr15:50,443,300...50,544,682
Ensembl chr15:50,488,149...50,544,680 		JBrowse link
G Megf10 multiple EGF-like domains 10 located_in ISO (PMID:17205124)
(MGI:4414741|PMID:19915564)		 RGD PMID:17205124 PMID:19915564 MGI:4414741 NCBI chr18:50,605,231...50,755,441
Ensembl chr18:50,605,656...50,754,456 		JBrowse link
G Myo1g myosin IG located_in ISO (MGI:5566942|PMID:24310084), (MGI:5586792|PMID:23038771) RGD PMID:23038771 PMID:24310084 MGI:5566942 MGI:5586792 NCBI chr14:81,386,701...81,401,843
Ensembl chr14:81,386,701...81,401,843 		JBrowse link
G Pear1 platelet endothelial aggregation receptor 1 located_in ISO (MGI:4414741|PMID:19915564) RGD PMID:19915564 MGI:4414741 NCBI chr 2:173,206,298...173,234,106
Ensembl chr 2:173,207,664...173,227,440 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:8,397,406...8,426,030
Ensembl chr 7:8,397,406...8,425,988 		JBrowse link
G Rab11fip2 RAB11 family interacting protein 2 located_in
is_active_in		 ISO
IBA		 (PMID:30883606)
PMID:21873635		 RGD PMID:30883606 PMID:21873635 RGD:13792537 NCBI chr 1:258,950,535...259,094,555
Ensembl chr 1:258,923,873...259,093,752 		JBrowse link
G Rab31 RAB31, member RAS oncogene family located_in ISS
ISO		 GO_REF:0000024
(MGI:6271154|PMID:25568335)		 UniProt
RGD		 PMID:25568335 GO_REF:0000024 MGI:6271154 NCBI chr 9:105,246,712...105,382,973
Ensembl chr 9:105,246,709...105,381,253 		JBrowse link
G Rac1 Rac family small GTPase 1 located_in ISO (MGI:5315376|PMID:10934045) RGD PMID:10934045 MGI:5315376 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rack1 receptor for activated C kinase 1 located_in ISO
ISS		 (PMID:21347310)
GO_REF:0000024		 RGD
UniProt		 PMID:21347310 GO_REF:0000024 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Sh3bp1 SH3-domain binding protein 1 located_in ISS
ISO		 GO_REF:0000024
(PMID:26465210)		 UniProt
RGD		 PMID:26465210 GO_REF:0000024 NCBI chr 7:110,457,626...110,470,201
Ensembl chr 7:110,457,710...110,470,201 		JBrowse link
G Snx5 sorting nexin 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:131,621,709...131,641,205
Ensembl chr 3:131,621,880...131,641,192 		JBrowse link
G Syt11 synaptotagmin 11 located_in ISO (MGI:5468041|PMID:23303671) RGD PMID:23303671 MGI:5468041 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Ticam2 toll-like receptor adaptor molecule 2 located_in ISO (PMID:30883606) RGD PMID:30883606 NCBI chr18:39,289,902...39,311,462
Ensembl chr18:39,294,453...39,311,462 		JBrowse link
G Tlr4 toll-like receptor 4 located_in ISO
IEA		 (PMID:30883606)
GO_REF:0000107		 RGD
Ensembl		 PMID:30883606 GO_REF:0000107 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Tnf tumor necrosis factor located_in ISO (MGI:3610792|PMID:16282525) RGD PMID:16282525 MGI:3610792 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Trip10 thyroid hormone receptor interactor 10 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:2,133,085...2,147,795
Ensembl chr 9:2,133,671...2,147,799 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      phagocytic cup 29
        phagocytic cup base 0
        phagocytic cup lip 0
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      membrane 9945
        plasma membrane 6245
          phagocytic cup 29
            phagocytic cup base 0
            phagocytic cup lip 0
paths to the root