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ONTOLOGY REPORT - ANNOTATIONS

Term:phagocytic cup
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Accession:GO:0001891 term browser browse the term
Definition:An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome.

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phagocytic cup term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 ISS
ISO		 GO_REF:0000024
(MGI:3662940|PMID:16908670)		 Alzheimers_University_of_Toronto
RGD		 PMID:16908670 GO_REF:0000024 MGI:3662940 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO (MGI:5449460|PMID:23100514) RGD PMID:23100514 MGI:5449460 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 ISO (MGI:3764740|PMID:17960134) RGD PMID:17960134 MGI:3764740 NCBI chr 7:115,766,484...115,828,514 JBrowse link
G Aif1 allograft inflammatory factor 1 ISS
ISO		 GO_REF:0000024
(MGI:3042556|PMID:14756805), (MGI:5315376|PMID:10934045)		 UniProt
RGD		 PMID:10934045 PMID:14756805 GO_REF:0000024 MGI:3042556 MGI:5315376 NCBI chr20:5,161,350...5,167,176
Ensembl chr20:5,161,333...5,166,448 		JBrowse link
G Anxa1 annexin A1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:237,893,983...237,910,002
Ensembl chr 1:237,893,966...237,910,012 		JBrowse link
G Arhgap12 Rho GTPase activating protein 12 ISO (PMID:26465210) RGD PMID:26465210 NCBI chr17:54,280,815...54,394,716
Ensembl chr17:54,280,851...54,394,634 		JBrowse link
G Arhgap25 Rho GTPase activating protein 25 ISO
IBA		 (PMID:26465210)
PMID:21873635		 RGD PMID:26465210, PMID:21873635 RGD:13792537 NCBI chr 4:119,249,682...119,327,822
Ensembl chr 4:119,249,682...119,327,822 		JBrowse link
G Bin2 bridging integrator 2 colocalizes_with ISO
IBA
ISS		 (PMID:23285027)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:23285027, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:142,273,832...142,304,731
Ensembl chr 7:142,273,833...142,300,382 		JBrowse link
G Cdc42se2 CDC42 small effector 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:40,054,393...40,122,915
Ensembl chr10:40,054,400...40,122,915 		JBrowse link
G Coro1a coronin 1A ISO (PMID:17442961) RGD PMID:17442961 NCBI chr 1:198,123,883...198,128,890
Ensembl chr 1:198,123,884...198,128,857 		JBrowse link
G Dnm2 dynamin 2 IDA RGD PMID:12802072 RGD:9685290 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524 		JBrowse link
G Irgm immunity-related GTPase M IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 ISO (MGI:3042556|PMID:14756805) RGD PMID:14756805 MGI:3042556 NCBI chr15:57,170,566...57,277,811
Ensembl chr15:57,221,292...57,277,811 		JBrowse link
G Megf10 multiple EGF-like domains 10 ISO (PMID:17205124)
(MGI:4414741|PMID:19915564)		 RGD PMID:17205124 PMID:19915564 MGI:4414741 NCBI chr18:52,215,652...52,366,212
Ensembl chr18:52,215,682...52,366,238 		JBrowse link
G Myo1g myosin IG ISO (MGI:5566942|PMID:24310084), (MGI:5586792|PMID:23038771) RGD PMID:23038771 PMID:24310084 MGI:5566942 MGI:5586792 NCBI chr14:86,781,243...86,796,393
Ensembl chr14:86,781,202...86,796,378 		JBrowse link
G Pear1 platelet endothelial aggregation receptor 1 ISO (MGI:4414741|PMID:19915564) RGD PMID:19915564 MGI:4414741 NCBI chr 2:187,114,219...187,134,209
Ensembl chr 2:187,114,217...187,133,993 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:11,267,207...11,294,291
Ensembl chr 7:11,267,218...11,294,249 		JBrowse link
G Rab11fip2 RAB11 family interacting protein 2 ISO
IBA		 (PMID:30883606)
PMID:21873635		 RGD PMID:30883606, PMID:21873635 RGD:13792537 NCBI chr 1:281,065,346...281,101,163
Ensembl chr 1:281,065,168...281,101,438 		JBrowse link
G Rab31 RAB31, member RAS oncogene family ISS
ISO		 GO_REF:0000024
(MGI:6271154|PMID:25568335)		 UniProt
RGD		 PMID:25568335 GO_REF:0000024 MGI:6271154 NCBI chr 9:113,370,072...113,504,606
Ensembl chr 9:113,370,033...113,504,605 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO (MGI:5315376|PMID:10934045) RGD PMID:10934045 MGI:5315376 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873 		JBrowse link
G Rack1 receptor for activated C kinase 1 ISO
ISS		 (PMID:21347310)
GO_REF:0000024		 RGD
UniProt		 PMID:21347310 GO_REF:0000024 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198 		JBrowse link
G Sh3bp1 SH3-domain binding protein 1 ISO
ISS		 (PMID:26465210)
GO_REF:0000024		 RGD
UniProt		 PMID:26465210 GO_REF:0000024 NCBI chr 7:120,125,747...120,138,148
Ensembl chr 7:120,125,633...120,138,196 		JBrowse link
G Snx5 sorting nexin 5 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:138,378,032...138,397,944
Ensembl chr 3:138,378,202...138,397,870 		JBrowse link
G Syt11 synaptotagmin 11 ISO (MGI:5468041|PMID:23303671) RGD PMID:23303671 MGI:5468041 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177 		JBrowse link
G Ticam2 toll-like receptor adaptor molecule 2 ISO (PMID:30883606) RGD PMID:30883606 NCBI chr18:40,555,106...40,572,569
Ensembl chr18:40,555,106...40,572,241 		JBrowse link
G Tlr4 toll-like receptor 4 ISO
IEA		 (PMID:30883606)
GO_REF:0000107		 RGD
Ensembl		 PMID:30883606 GO_REF:0000107 NCBI chr 5:82,587,424...82,601,056
Ensembl chr 5:82,587,420...82,601,052 		JBrowse link
G Tnf tumor necrosis factor ISO (MGI:3610792|PMID:16282525) RGD PMID:16282525 MGI:3610792 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000 		JBrowse link
G Trip10 thyroid hormone receptor interactor 10 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:9,689,214...9,702,353
Ensembl chr 9:9,689,475...9,702,306 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      phagocytic cup 28
        phagocytic cup base 0
        phagocytic cup lip 0
Path 2
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      membrane 10199
        plasma membrane 6317
          phagocytic cup 28
            phagocytic cup base 0
            phagocytic cup lip 0
paths to the root