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ONTOLOGY REPORT - ANNOTATIONS


Term:liver development
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Accession:GO:0001889 term browser browse the term
Definition:The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.


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liver development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aacs acetoacetyl-CoA synthetase ISO RGD PMID:10513626 RGD:2301023 NCBI chrNW_004936558:327,822...373,474 JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain acts_upstream_of_or_within ISO (MGI:3692159|PMID:16121256) MGI PMID:16121256 MGI:3692159 NCBI chrNW_004936571:2,761,254...2,797,045 JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO RGD PMID:5166591 RGD:2326169 NCBI chrNW_004936551:594,647...626,016 JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 ISO RGD PMID:5166591 RGD:2326169 NCBI chrNW_004936489:11,255,871...11,273,848 JBrowse link
G Aco1 aconitase 1 ISO RGD PMID:755797 RGD:11552585 NCBI chrNW_004936524:1,081,672...1,134,971 JBrowse link
G Aco2 aconitase 2 ISO RGD PMID:755797 RGD:11552585 NCBI chrNW_004936492:407,482...452,538 JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:72798|PMID:7731963)
(MGI:74163|PMID:7670465)
MGI PMID:7670465 PMID:7731963 MGI:72798 MGI:74163 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:8408243 RGD:8548535 NCBI chrNW_004936504:5,985,407...5,987,453 JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493), (MGI:3794480|PMID:16443691), (MGI:72762|PMID:7732381), (MGI:81320|PMID:8692887) DFLAT PMID:7732381 PMID:8692887 PMID:10973493 PMID:16443691 MGI:1889403 MGI:3794480 MGI:72762 MGI:81320 NCBI chrNW_004936546:3,737,908...3,783,492 JBrowse link
G Ak2 adenylate kinase 2 ISO RGD PMID:5123889 RGD:5490208 NCBI chrNW_004936474:15,887,014...15,908,522 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:5123889 RGD:5490208 NCBI chrNW_004936503:497,391...517,011 JBrowse link
G Ak4 adenylate kinase 4 ISO RGD PMID:9813319 RGD:632174 NCBI chrNW_004936692:2,593,409...2,654,583 JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:14729401 RGD:1643117 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:14729401 RGD:1643117 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO RGD PMID:16291827 RGD:2300311 NCBI chrNW_004936558:4,362,693...4,387,705 JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family member A1 ISO RGD PMID:19150623 RGD:2313411 NCBI chrNW_004936481:19,630,045...19,650,009 JBrowse link
G Aldob aldolase, fructose-bisphosphate B ISO RGD PMID:8641049 RGD:2313428 NCBI chrNW_004936524:9,584,302...9,592,961 JBrowse link
G Ang angiogenin ISO RGD PMID:2440105 RGD:2325721 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G Arf6 ADP ribosylation factor 6 acts_upstream_of_or_within ISO (MGI:3653957|PMID:16880525) MGI PMID:16880525 MGI:3653957 NCBI chrNW_004936583:181,490...185,466 JBrowse link
G Asl argininosuccinate lyase ISO DNA:increased methylation:5' utr RGD PMID:9535537 PMID:10473900 RGD:1599266 RGD:1599268 NCBI chrNW_004936543:7,688,788...7,699,842 JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) ISO RGD PMID:237754 RGD:2316008 NCBI chrNW_004936585:2,834,202...2,854,740 JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:9395312 PMID:10473900 RGD:1599266 RGD:4139912 NCBI chrNW_004936487:17,482,307...17,527,407 JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO (MGI:3719954|PMID:17699753) MGI PMID:17699753 MGI:3719954 NCBI chrNW_004936509:4,729,984...4,826,367 JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:3587473|PMID:15866887) MGI PMID:15866887 MGI:3587473 NCBI chrNW_004936602:1,938,720...2,179,239 JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO RGD PMID:8420961 RGD:13792579 NCBI chrNW_004936646:951,236...958,907 JBrowse link
G Atp7a ATPase copper transporting alpha ISO RGD PMID:25349135 RGD:11341669 NCBI chrNW_004936683:2,874,022...2,936,214 JBrowse link
G Baat bile acid-CoA:amino acid N-acyltransferase ISO RGD PMID:7575455 RGD:69770 NCBI chrNW_004936524:9,536,032...9,544,901 JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 ISO RGD PMID:2806552 RGD:4105456 NCBI chrNW_004936833:367,790...409,966 JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:14160653 RGD:2303538 NCBI chrNW_004936493:5,308,268...5,332,934 JBrowse link
G Cadm1 cell adhesion molecule 1 ISO RGD PMID:17326163 RGD:2289097 NCBI chrNW_004936542:569,739...883,738 JBrowse link
G Cast calpastatin ISO RGD PMID:16871587 RGD:5683869 NCBI chrNW_004936523:6,688,153...6,798,184 JBrowse link
G Ccnd1 cyclin D1 ISO RGD PMID:15809057 RGD:1582338
G Ccnd2 cyclin D2 ISO RGD PMID:15809057 RGD:1582338 NCBI chrNW_004936606:4,474,801...4,496,158 JBrowse link
G Ccne1 cyclin E1 ISO RGD PMID:15809057 RGD:1582338 NCBI chrNW_004936570:5,536,817...5,547,880 JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO (MGI:6284072|PMID:30635284) UniProt PMID:30635284 MGI:6284072 NCBI chrNW_004936490:13,345,443...13,355,841 JBrowse link
G Cdkn2b cyclin dependent kinase inhibitor 2B ISO RGD PMID:11042273 RGD:7248763 NCBI chrNW_004936652:3,576,975...3,582,790 JBrowse link
G Cebpa CCAAT enhancer binding protein alpha involved_in
acts_upstream_of_or_within
ISO (MGI:83240|PMID:8798745)
(MGI:3688957|PMID:17021047)
RGD
UniProt
MGI
PMID:8798745 PMID:16172914 PMID:17021047 MGI:3688957 MGI:83240 RGD:1625368 NCBI chrNW_004936570:2,513,561...2,516,213 JBrowse link
G Cebpg CCAAT enhancer binding protein gamma involved_in ISO PMID:1377818 UniProt PMID:1377818 RGD:69946 NCBI chrNW_004936570:2,435,672...2,439,056 JBrowse link
G Cit citron rho-interacting serine/threonine kinase ISO RGD PMID:12411428 RGD:628497 NCBI chrNW_004936668:991,043...1,146,578 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within
involved_in
ISO (MGI:3847632|PMID:17644732)
(MGI:3813432|PMID:17932483)
MGI
BHF-UCL
PMID:17644732 PMID:17932483 MGI:3813432 MGI:3847632 NCBI chrNW_004936560:6,353,901...6,356,749 JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004936686:621,502...872,824 JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:8690412 RGD:4144072 NCBI chrNW_004936586:5,739,038...5,850,317 JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17236583 RGD:1599633 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Ddx39b DExD-box helicase 39B ISO RGD PMID:1618789 RGD:632224 NCBI chrNW_004936727:1,968,032...1,980,789 JBrowse link
G Dut deoxyuridine triphosphatase ISO RGD PMID:11121581 RGD:5133681 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:12454858 RGD:2289959 NCBI chrNW_004936678:365,005...560,546 JBrowse link
G Elk1 ETS transcription factor ELK1 acts_upstream_of_or_within ISO (MGI:6472092|PMID:31877385) MGI PMID:31877385 MGI:6472092 NCBI chrNW_004936502:13,402,726...13,418,214 JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:10231554 RGD:13204733 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Ephx1 epoxide hydrolase 1 ISO RGD PMID:2469391 RGD:4889418 NCBI chrNW_004936526:2,589,254...2,652,831 JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO RGD PMID:12454858 RGD:2289959 NCBI chrNW_004936490:14,887,062...14,910,038 JBrowse link
G Foxm1 forkhead box M1 acts_upstream_of_or_within ISO (MGI:3522012|PMID:15531365) MGI PMID:15531365 MGI:3522012 NCBI chrNW_004936606:3,185,289...3,198,427 JBrowse link
G Fpgs folylpolyglutamate synthase ISO RGD PMID:1435744 RGD:2315102 NCBI chrNW_004936487:15,453,010...15,466,591 JBrowse link
G Fscn1 fascin actin-bundling protein 1 ISO RGD PMID:18855019 RGD:2317768 NCBI chrNW_004936765:609,894...619,417 JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:3575862|PMID:15767668) MGI PMID:15767668 MGI:3575862 NCBI chrNW_004936550:1,814,336...1,844,399 JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ISO RGD PMID:3996734 RGD:2302171 NCBI chrNW_004936697:2,079,396...2,087,602 JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3525024|PMID:15578515) MGI PMID:15578515 MGI:3525024 NCBI chrNW_004936711:640,002...642,580 JBrowse link
G Hgf hepatocyte growth factor acts_upstream_of_or_within ISO (MGI:3653957|PMID:16880525) MGI PMID:16880525 MGI:3653957 NCBI chrNW_004936734:354,798...428,356 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:1855906|PMID:10804184), (MGI:3703395|PMID:16364283)
(MGI:3487182|PMID:15459110)
(MGI:1891782|PMID:11027604)
MGI PMID:10804184 PMID:11027604 PMID:15459110 PMID:16364283 MGI:1855906 MGI:1891782 MGI:3487182 MGI:3703395 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chrNW_004936650:1,416,825...1,422,595 JBrowse link
G Hmbs hydroxymethylbilane synthase ISO RGD PMID:971328 RGD:25394583 NCBI chrNW_004936542:4,037,888...4,046,089 JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase ISO RGD PMID:13990 RGD:2326149 NCBI chrNW_004936474:8,955,216...8,971,078 JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO RGD PMID:5166591 RGD:2326169 NCBI chrNW_004936480:18,862,288...18,882,614 JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chrNW_004936627:4,451,847...4,473,163 JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (MGI:1202489|PMID:9566924) MGI PMID:9566924 MGI:1202489 NCBI chrNW_004936668:62,103...81,549 JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20102719 RGD:10042969 NCBI chrNW_004936738:2,096,370...2,115,135 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chrNW_004936828:827,660...839,088 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO RGD PMID:2581126 RGD:14694813 NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2155922|PMID:11773599), (MGI:892192|PMID:9176412) MGI PMID:9176412 PMID:11773599 MGI:2155922 MGI:892192 NCBI chrNW_004936720:1,041,216...1,168,725 JBrowse link
G Igf2r insulin like growth factor 2 receptor ISO RGD PMID:12127995 RGD:2311626 NCBI chrNW_004936489:11,447,043...11,523,695 JBrowse link
G Insr insulin receptor ISO RGD PMID:6364984 RGD:14701029 NCBI chrNW_004936588:4,345,306...4,453,380 JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO (MGI:1096257|PMID:9376320) MGI PMID:9376320 MGI:1096257 NCBI chrNW_004936552:1,566,382...1,786,837 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (MGI:1338596|PMID:10352021) MGI PMID:10352021 MGI:1338596 NCBI chrNW_004936522:3,034,364...3,037,632 JBrowse link
G Klf1 Kruppel like factor 1 acts_upstream_of_or_within ISO (MGI:73364|PMID:7753194) MGI PMID:7753194 MGI:73364 NCBI chrNW_004936659:1,946,614...1,950,003 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO RGD PMID:1526114 RGD:11060153 NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G Lipc lipase C, hepatic type ISO RGD PMID:11004003 RGD:2307448 NCBI chrNW_004936471:19,604,083...19,733,721 JBrowse link
G LOC101954516 signal transducer and activator of transcription 5B ISO RGD PMID:17565389 RGD:2291935 NCBI chrNW_004936490:17,022,268...17,043,751 JBrowse link
G LOC101958966 lipopolysaccharide binding protein ISO RGD PMID:20978830 RGD:9685195 NCBI chrNW_004936561:3,017,471...3,035,481 JBrowse link
G LOC101960773 cyclic AMP-dependent transcription factor ATF-7 involved_in ISO (MGI:3719954|PMID:17699753) MGI PMID:17699753 MGI:3719954 NCBI chrNW_004936512:10,780,826...10,884,806 JBrowse link
G LOC101960907 uncharacterized LOC101960907 acts_upstream_of_or_within ISO (MGI:3763866|PMID:17936262) MGI PMID:17936262 MGI:3763866 NCBI chrNW_004936471:14,532,888...14,581,258 JBrowse link
G LOC101962856 ceruloplasmin ISO RGD PMID:2332446 RGD:728241 NCBI chrNW_004936519:6,431,156...6,473,183 JBrowse link
G LOC101965998 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G LOC101966155 alpha fetoprotein ISO RGD PMID:16822301 RGD:2292045 NCBI chrNW_004936598:2,058,474...2,077,711 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO RGD PMID:12162855 RGD:727721 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
G LOC101973467 D-box binding PAR bZIP transcription factor ISO RGD PMID:2331750 RGD:727680 NCBI chrNW_004936664:2,676,754...2,682,425 JBrowse link
G LOC101976500 haptoglobin ISO RGD PMID:16172914 RGD:1625368 NCBI chrNW_004936475:21,841,054...21,845,821 JBrowse link
G Lsr lipolysis stimulated lipoprotein receptor involved_in ISO (MGI:3052428|PMID:15265030) HGNC-UCL PMID:15265030 MGI:3052428 NCBI chrNW_004936570:1,023,967...1,038,223 JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (MGI:3652665|PMID:16754854) MGI PMID:16754854 MGI:3652665 NCBI chrNW_004936531:4,331,354...4,494,110 JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:2682174|PMID:14500757) MGI PMID:14500757 MGI:2682174 NCBI chrNW_004936490:14,625,201...14,663,184 JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:76093|PMID:7651534) RGD
MGI
PMID:7651534 PMID:8506951 MGI:76093 RGD:2317549 NCBI chrNW_004936589:2,280,803...2,390,179 JBrowse link
G Mpst mercaptopyruvate sulfurtransferase ISO RGD PMID:6573924 RGD:9685558 NCBI chrNW_004936492:3,873,295...3,876,895 JBrowse link
G Mrtfb myocardin related transcription factor B acts_upstream_of_or_within ISO (MGI:3695837|PMID:17183527) MGI PMID:17183527 MGI:3695837 NCBI chrNW_004936501:2,414,696...2,571,627 JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chrNW_004936538:3,394,623...3,596,025 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3045664|PMID:15226394) MGI PMID:15226394 MGI:3045664 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Nts neurotensin ISO RGD PMID:8342998 RGD:9743870 NCBI chrNW_004936507:3,318,982...3,329,248 JBrowse link
G Onecut2 one cut homeobox 2 acts_upstream_of_or_within ISO (MGI:3763866|PMID:17936262) MGI PMID:17936262 MGI:3763866 NCBI chrNW_004936497:6,853,739...6,896,408 JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:8690412 RGD:4144072 NCBI chrNW_004936502:5,234,253...5,291,891 JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in
acts_upstream_of_or_within
ISO PMID:12552133
(PMID:12552133)
HGNC-UCL PMID:12552133 RGD:629554 NCBI chrNW_004936522:6,271,339...6,300,202 JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chrNW_004936472:23,102,534...23,107,127 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:5582991|PMID:24691033) MGI PMID:24691033 MGI:5582991 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (MGI:5441703|PMID:21685914) MGI PMID:21685914 MGI:5441703 NCBI chrNW_004936694:1,923,383...1,958,160 JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in
acts_upstream_of_or_within
ISO (PMID:11891195)
(MGI:5441703|PMID:21685914)
UniProt
MGI
PMID:11891195 PMID:21685914 MGI:5441703 NCBI chrNW_004936905:76,781...128,995 JBrowse link
G Pkm pyruvate kinase M1/2 ISO RGD PMID:7327170 RGD:2303137 NCBI chrNW_004936471:31,589,322...31,617,891 JBrowse link
G Prkcsh protein kinase C substrate 80K-H acts_upstream_of_or_within ISO (MGI:5441703|PMID:21685914) MGI PMID:21685914 MGI:5441703 NCBI chrNW_004936659:1,501,425...1,511,634 JBrowse link
G Proc protein C, inactivator of coagulation factors Va and VIIIa acts_upstream_of_or_within ISO (MGI:1306904|PMID:9788960) RGD
MGI
PMID:7660357 PMID:9788960 MGI:1306904 RGD:1299299 NCBI chrNW_004936469:43,841,989...43,850,322 JBrowse link
G Pros1 protein S ISO RGD PMID:7660357 RGD:1299299 NCBI chrNW_004936666:18,303...110,357 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11789987) RGD
BHF-UCL
PMID:11789987 PMID:16770575 RGD:5133274 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Psmb9 proteasome 20S subunit beta 9 ISO RGD PMID:24707720 RGD:9854625 NCBI chrNW_004936476:25,894,313...25,899,132 JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 acts_upstream_of_or_within ISO (MGI:3829520|PMID:18729827) MGI PMID:18729827 MGI:3829520 NCBI chrNW_004936549:4,135,854...4,164,991 JBrowse link
G Ptn pleiotrophin ISO RGD PMID:12057922 RGD:727382 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
G Qdpr quinoid dihydropteridine reductase ISO RGD PMID:710385 RGD:5128606 NCBI chrNW_004936477:10,687,328...10,708,015 JBrowse link
G Rara retinoic acid receptor alpha ISO RGD PMID:15388488 RGD:2314298 NCBI chrNW_004936490:15,376,217...15,420,638 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 acts_upstream_of_or_within ISO (MGI:3689241|PMID:17015619) MGI PMID:17015619 MGI:3689241 NCBI chrNW_004936590:260,685...335,143 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (MGI:76008|PMID:7603567) UniProt PMID:7603567 MGI:76008 NCBI chrNW_004936599:3,800,142...3,810,583 JBrowse link
G Rgn regucalcin ISO RGD PMID:8794449 PMID:9546611 RGD:9590173 RGD:9590212 NCBI chrNW_004936502:12,872,938...12,891,270 JBrowse link
G Rhbdd3 rhomboid domain containing 3 acts_upstream_of_or_within ISO (MGI:5492204|PMID:23610400) MGI PMID:23610400 MGI:5492204 NCBI chrNW_004936657:3,290,684...3,296,352 JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (MGI:3716248|PMID:17558409) MGI PMID:17558409 MGI:3716248 NCBI chrNW_004936475:6,219,187...6,321,612 JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:14729401 RGD:1643117 NCBI chrNW_004936669:2,735,111...2,763,060 JBrowse link
G Sec63 SEC63 homolog, protein translocation regulator acts_upstream_of_or_within ISO (MGI:5441703|PMID:21685914) MGI PMID:21685914 MGI:5441703 NCBI chrNW_004936564:4,182,330...4,221,927 JBrowse link
G Slc25a4 solute carrier family 25 member 4 ISO RGD PMID:9468308 RGD:9681468 NCBI chrNW_004936554:4,130,461...4,135,046 JBrowse link
G Slco1b3 solute carrier organic anion transporter family member 1B3 ISO RGD PMID:15288467 RGD:2303131 NCBI chrNW_004936548:5,593,908...5,682,187 JBrowse link
G Slco2b1 solute carrier organic anion transporter family member 2B1 ISO RGD PMID:15345472 RGD:2316987 NCBI chrNW_004936498:3,998,537...4,047,436 JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3610843|PMID:16287714) MGI PMID:16287714 MGI:3610843 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO (MGI:3718142|PMID:17367743) MGI PMID:17367743 MGI:3718142 NCBI chrNW_004936489:11,178,338...11,191,601 JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936512:10,655,116...10,693,025 JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936509:3,740,393...3,782,873 JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chrNW_004936634:758,231...798,809 JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:9199345 RGD:11039429 NCBI chrNW_004936495:12,952,610...12,957,640 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 acts_upstream_of_or_within ISO (MGI:3806427|PMID:18722179) MGI PMID:18722179 MGI:3806427 NCBI chrNW_004936842:667,960...669,367 JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (MGI:2663364|PMID:12773577) BHF-UCL PMID:12773577 MGI:2663364 NCBI chrNW_004936537:7,154,125...7,340,218 JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004936490:15,188,341...15,206,032 JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:995499 RGD:2317236 NCBI chrNW_004936594:2,784,891...2,794,693 JBrowse link
G Upb1 beta-ureidopropionase 1 ISO RGD PMID:6870258 RGD:2317093 NCBI chrNW_004936619:668,380...713,720 JBrowse link
G Upf2 UPF2 regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (MGI:4821037|PMID:20657840) MGI PMID:20657840 MGI:4821037 NCBI chrNW_004936484:3,266,196...3,381,511 JBrowse link
G Urod uroporphyrinogen decarboxylase ISO RGD PMID:6219675 RGD:4145103 NCBI chrNW_004936474:26,207,169...26,210,599 JBrowse link
G Vwf von Willebrand factor acts_upstream_of_or_within ISO (MGI:70957|PMID:7854452) MGI PMID:7854452 MGI:70957 NCBI chrNW_004936709:1,578,137...1,741,877 JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO (PMID:15312687) UniProt PMID:15312687 NCBI chrNW_004936474:7,623,462...7,635,416 JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (MGI:1352298|PMID:10652269) UniProt PMID:10652269 MGI:1352298 NCBI chrNW_004936657:2,891,171...2,895,409 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:5609934|PMID:23117660) MGI PMID:23117660 MGI:5609934 NCBI chrNW_004936474:22,035,059...22,077,846 JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain containing 39 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004936566:2,610,756...2,663,657 JBrowse link
G Ccdc40 coiled-coil domain containing 40 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004936594:4,075,105...4,124,850 JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004936641:3,656,331...3,674,907 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004936529:6,013,321...6,048,249 JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) BHF-UCL PMID:21719175 NCBI chrNW_004936905:76,781...128,995 JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004936513:9,780,895...9,792,865 JBrowse link
hepatoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggt1 gamma-glutamyltransferase 1 ISO RGD PMID:10934156 RGD:14701049 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:3720549|PMID:17580084) MGI PMID:17580084 MGI:3720549 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004936490:649,551...702,448 JBrowse link
hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:11668598 RGD:2306909 NCBI chrNW_004936503:9,124,314...9,142,372 JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:12939595 RGD:4144098 NCBI chrNW_004936586:5,739,038...5,850,317 JBrowse link
G E2f7 E2F transcription factor 7 involved_in ISO (MGI:5449497|PMID:23064266) UniProt PMID:23064266 MGI:5449497 NCBI chrNW_004936568:5,206,135...5,245,324 JBrowse link
G E2f8 E2F transcription factor 8 involved_in ISO (MGI:5449497|PMID:23064266), (MGI:5449498|PMID:23064264) UniProt PMID:23064264 PMID:23064266 MGI:5449497 MGI:5449498 NCBI chrNW_004936654:322,863...339,365 JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO RGD PMID:10934156 RGD:14701049 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:1891782|PMID:11027604) MGI PMID:11027604 MGI:1891782 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Hnf1b HNF1 homeobox B ISO RGD PMID:18286537 RGD:2312718 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO RGD PMID:19621519 RGD:12904750 NCBI chrNW_004936530:2,401,053...2,425,989 JBrowse link
G Itga2 integrin subunit alpha 2 ISO RGD PMID:16458388 RGD:2307397 NCBI chrNW_004936480:14,320,292...14,417,828 JBrowse link
G Krt18 keratin 18 ISO RGD PMID:24340101 PMID:28941653 RGD:27226712 RGD:27226713 NCBI chrNW_004936512:10,290,706...10,294,647 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO RGD PMID:17574236 RGD:2306655 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
G Prox1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:15232737) BHF-UCL PMID:15232737 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 acts_upstream_of_or_within ISO (MGI:3806427|PMID:18722179) MGI PMID:18722179 MGI:3806427 NCBI chrNW_004936842:667,960...669,367 JBrowse link
G Wnt1 Wnt family member 1 ISO RGD PMID:20413689 RGD:2326223 NCBI chrNW_004936512:6,781,001...6,785,358 JBrowse link
hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgl1 fibrinogen like 1 involved_in ISO (PMID:19880967) UniProt PMID:19880967 NCBI chrNW_004936614:431,537...452,174 JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:84432|PMID:8910279) UniProt PMID:8910279 MGI:84432 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G LOC101965998 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G Mki67 marker of proliferation Ki-67 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004936486:15,561,327...15,587,109 JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:29138817 RGD:15042871 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO (MGI:1860507|PMID:10888866) MGI PMID:10888866 MGI:1860507 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Rps6ka1 ribosomal protein S6 kinase A1 involved_in ISO (MGI:3778721|PMID:10635333) UniProt PMID:10635333 MGI:3778721 NCBI chrNW_004936474:10,996,867...11,030,504 JBrowse link
G Tgfa transforming growth factor alpha involved_in ISO PMID:10635333
(MGI:3778721|PMID:10635333)
UniProt PMID:10635333 MGI:3778721 RGD:10047310 NCBI chrNW_004936491:14,659,089...14,758,614 JBrowse link
intrahepatic bile duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO (MGI:5305417|PMID:18434600) MGI PMID:18434600 MGI:5305417 NCBI chrNW_004936477:22,254,109...22,300,827 JBrowse link
G LOC101965998 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:3852603|PMID:19403103) MGI PMID:19403103 MGI:3852603 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
liver morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within ISO (MGI:3713609|PMID:17339333) MGI PMID:17339333 MGI:3713609 NCBI chrNW_004936569:6,067,230...6,131,467 JBrowse link
G LOC101965998 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chrNW_004936752:440,137...577,339 JBrowse link
liver regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:8855951 RGD:8548508 NCBI chrNW_004936504:5,985,407...5,987,453 JBrowse link
G Alas2 5'-aminolevulinate synthase 2 ISO RGD PMID:6895999 RGD:11035238 NCBI chrNW_004936751:1,818,255...1,841,028 JBrowse link
G Angpt1 angiopoietin 1 ISO RGD PMID:11549276 RGD:704403 NCBI chrNW_004936470:37,105,469...37,328,183 JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 ISO RGD PMID:11032760 RGD:13782137 NCBI chrNW_004936677:552,066...585,093 JBrowse link
G Aurka aurora kinase A acts_upstream_of_or_within ISO (PMID:19435814) MGI PMID:19435814 NCBI chrNW_004936875:295,238...310,457 JBrowse link
G Bcl2 BCL2 apoptosis regulator ISO RGD PMID:21503946 RGD:11531107 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
G Ccnd1 cyclin D1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698
G Cftr CF transmembrane conductance regulator ISO RGD PMID:1378998 RGD:11567227 NCBI chrNW_004936589:1,565,933...1,719,208 JBrowse link
G Cldn1 claudin 1 ISO RGD PMID:15826721 RGD:11344894 NCBI chrNW_004936578:98,489...113,125 JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:19386599 RGD:7243112 NCBI chrNW_004936857:577,067...609,855 JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO RGD PMID:31953200 RGD:25823179 NCBI chrNW_004936599:1,491,934...1,535,101 JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO RGD PMID:8573159 RGD:11565141 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 ISO RGD PMID:8573159 RGD:11565141 NCBI chrNW_004936475:10,030,408...10,073,576 JBrowse link
G Csnk2b casein kinase 2 beta ISO RGD PMID:8573159 RGD:11565141 NCBI chrNW_004936727:1,857,596...1,862,551 JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:2401457 PMID:20395437 RGD:10395295 RGD:38599218 NCBI chrNW_004936678:365,005...560,546 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5637451|PMID:25477280) MGI PMID:25477280 MGI:5637451 NCBI chrNW_004936490:17,430,383...17,465,889 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5637451|PMID:25477280) MGI PMID:25477280 MGI:5637451 NCBI chrNW_004936527:5,024,077...5,069,152 JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:10632538 RGD:8662889 NCBI chrNW_004936735:209,369...234,582 JBrowse link
G Fga fibrinogen alpha chain ISO RGD PMID:3817019 RGD:728788 NCBI chrNW_004936576:1,322,406...1,329,743 JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO RGD PMID:16162160 RGD:10402121 NCBI chrNW_004936472:23,442,946...23,617,523 JBrowse link
G Gfer growth factor, augmenter of liver regeneration ISO RGD PMID:24880092 RGD:9685725 NCBI chrNW_004936694:2,051,362...2,053,812 JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO RGD PMID:10934156 RGD:14701049 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD
MGI
PMID:22024090 PMID:22790641 PMID:23740243 MGI:5515698 RGD:12832760 RGD:12911223 NCBI chrNW_004936646:1,622,308...1,629,787 JBrowse link
G Gli3 GLI family zinc finger 3 ISO RGD PMID:22024090 RGD:12911223 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Hfe homeostatic iron regulator ISO RGD PMID:22364558 RGD:8694419 NCBI chrNW_004936671:1,940,079...1,947,574 JBrowse link
G Hmox1 heme oxygenase 1 ISO RGD PMID:24815159 RGD:10755743 NCBI chrNW_004936492:5,042,353...5,049,216 JBrowse link
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 ISO RGD PMID:16081591 RGD:1599972 NCBI chrNW_004936501:13,363,630...13,367,553 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO RGD PMID:22024090 RGD:12911223 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
G Il10 interleukin 10 ISO RGD PMID:11813605 RGD:11049526 NCBI chrNW_004936557:5,834,874...5,838,502 JBrowse link
G Il18 interleukin 18 ISO RGD PMID:24412291 RGD:14696652 NCBI chrNW_004936612:2,306,963...2,325,086 JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:84432|PMID:8910279) UniProt PMID:8910279 MGI:84432 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Insr insulin receptor ISO RGD PMID:23633480 RGD:9685423 NCBI chrNW_004936588:4,345,306...4,453,380 JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor type 1 ISO RGD PMID:24814243 RGD:13793384 NCBI chrNW_004936577:3,896,455...4,198,396 JBrowse link
G Klkb1 kallikrein B1 ISO RGD PMID:9869390 RGD:7297052 NCBI chrNW_004936554:3,227,395...3,256,710 JBrowse link
G LOC101963795 60S ribosomal protein L30 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936493:7,942,669...7,943,133 JBrowse link
G LOC101966155 alpha fetoprotein ISO RGD PMID:2460696 RGD:126848734 NCBI chrNW_004936598:2,058,474...2,077,711 JBrowse link
G LOC101972117 hepcidin antimicrobial peptide ISO RGD PMID:22364558 RGD:8694419 NCBI chrNW_004936570:1,009,344...1,010,654 JBrowse link
G LOC101973720 rap guanine nucleotide exchange factor 3 ISO RGD PMID:22227930 RGD:9850085 NCBI chrNW_004936512:5,636,197...5,659,606 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:3335218 RGD:10059623 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Nfkbia NFKB inhibitor alpha ISO RGD PMID:24512945 RGD:10413865 NCBI chrNW_004936494:9,537,793...9,541,187 JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:14635188 RGD:11534994 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:29138817 RGD:15042871 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
G Pcna proliferating cell nuclear antigen ISO RGD PMID:7906221 RGD:10448980 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO RGD PMID:191106 RGD:11554175 NCBI chrNW_004936491:1,989,429...2,032,430 JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO RGD PMID:1841628 RGD:9743904 NCBI chrNW_004936481:18,607,212...18,679,828 JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:15837430 RGD:2299961 NCBI chrNW_004936664:3,492,032...3,502,738 JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:15837430 RGD:2299961 NCBI chrNW_004936722:1,379,515...1,388,538 JBrowse link
G Ptch1 patched 1 ISO RGD PMID:22024090 RGD:12911223 NCBI chrNW_004936626:4,241,993...4,301,919 JBrowse link
G Ptpn3 protein tyrosine phosphatase non-receptor type 3 ISO RGD PMID:7591957 RGD:1599982 NCBI chrNW_004936559:3,436,114...3,547,316 JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO RGD PMID:9015365 RGD:10003155 NCBI chrNW_004936690:275,840...363,752 JBrowse link
G Reg1a regenerating family member 1 alpha ISO RGD PMID:19284990 RGD:10044030 NCBI chrNW_004936556:4,873,331...4,875,608 JBrowse link
G Rgn regucalcin ISO RGD PMID:7759556 RGD:9590197 NCBI chrNW_004936502:12,872,938...12,891,270 JBrowse link
G Rpl10 ribosomal protein L10 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936809:1,146,994...1,149,573 JBrowse link
G Rpl13 ribosomal protein L13 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936641:437,684...441,257 JBrowse link
G Rpl18 ribosomal protein L18 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936664:2,665,084...2,668,706 JBrowse link
G Rpl19 ribosomal protein L19 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936490:14,471,200...14,476,206 JBrowse link
G Rpl32 ribosomal protein L32 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936602:982,633...986,458 JBrowse link
G Rpl7 ribosomal protein L7 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936648:2,055,396...2,058,664 JBrowse link
G Rps15 ribosomal protein S15 ISO RGD PMID:2829897 RGD:11040696 NCBI chrNW_004936588:762,153...763,405 JBrowse link
G Rps16 ribosomal protein S16 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004936661:2,271,747...2,274,769 JBrowse link
G Rps24 ribosomal protein S24 ISO RGD PMID:7612009 RGD:11041663 NCBI chrNW_004936521:1,562,013...1,568,280 JBrowse link
G Serpina10 serpin family A member 10 ISO RGD PMID:8670294 RGD:729731 NCBI chrNW_004936733:2,121,875...2,129,988 JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:22790641 RGD:12832760 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:23633480 RGD:9685423 NCBI chrNW_004936490:5,055,258...5,059,118 JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:7686911 RGD:729792 NCBI chrNW_004936495:12,952,610...12,957,640 JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004936514:5,819,375...5,899,324 JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:25862490 RGD:11073669 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Tnf tumor necrosis factor ISO RGD PMID:9178702 RGD:14995465 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:2707640 RGD:2317422 NCBI chrNW_004936550:33,797...42,233 JBrowse link
G Ucp2 uncoupling protein 2 ISO RGD PMID:19104935 RGD:7204431 NCBI chrNW_004936498:3,059,700...3,066,112 JBrowse link
G Vtn vitronectin ISO RGD PMID:10988248 RGD:10003090 NCBI chrNW_004936538:4,522,275...4,525,245 JBrowse link
G Vwf von Willebrand factor ISO RGD PMID:12217600 RGD:727737 NCBI chrNW_004936709:1,578,137...1,741,877 JBrowse link
G Wdr35 WD repeat domain 35 ISO RGD PMID:18472094 RGD:11553927 NCBI chrNW_004936493:11,374,681...11,435,792 JBrowse link
negative regulation of hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frzb frizzled related protein acts_upstream_of_or_within ISO (MGI:4356222|PMID:19562671) MGI PMID:19562671 MGI:4356222 NCBI chrNW_004936509:11,440,414...11,471,042 JBrowse link
negative regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpb2 carboxypeptidase B2 ISO RGD PMID:19386599 RGD:7243112 NCBI chrNW_004936857:577,067...609,855 JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (MGI:5559100|PMID:24058607) MGI PMID:24058607 MGI:5559100 NCBI chrNW_004936829:187,234...240,213 JBrowse link
G Lims2 LIM zinc finger domain containing 2 acts_upstream_of_or_within ISO (MGI:5559100|PMID:24058607) MGI PMID:24058607 MGI:5559100 NCBI chrNW_004936469:43,628,280...43,665,145 JBrowse link
G LOC101954488 CEA cell adhesion molecule 1 involved_in ISO PMID:15467833
(MGI:3057041|PMID:15467833)
UniProt PMID:15467833 MGI:3057041 RGD:11059592 NCBI chrNW_004936706:37,480...53,306 JBrowse link
positive regulation of hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:19229878 RGD:8885195 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Foxa3 forkhead box A3 ISO RGD PMID:9878541 RGD:2315086 NCBI chrNW_004936706:2,196,530...2,202,924 JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:4441249 NCBI chrNW_004936483:15,533,264...15,534,576 JBrowse link
positive regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cflar CASP8 and FADD like apoptosis regulator ISO RGD PMID:16033771 RGD:11341689 NCBI chrNW_004936726:381,888...425,565 JBrowse link
G Fgf1 fibroblast growth factor 1 involved_in ISO PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chrNW_004936504:11,590,687...11,684,410 JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in ISO PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chrNW_004936609:3,677,661...3,706,511 JBrowse link
G Hpn hepsin involved_in ISO (PMID:15614436) UniProt PMID:15614436 NCBI chrNW_004936570:1,170,951...1,186,501 JBrowse link
G Il18 interleukin 18 ISO RGD PMID:24412291 RGD:14696652 NCBI chrNW_004936612:2,306,963...2,325,086 JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor type 1 ISO RGD PMID:24814243 RGD:13793384 NCBI chrNW_004936577:3,896,455...4,198,396 JBrowse link
G Mdk midkine involved_in ISO (MGI:3606557|PMID:15482347) UniProt PMID:15482347 MGI:3606557 NCBI chrNW_004936562:2,687,825...2,690,292 JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:3719773|PMID:17438330) MGI PMID:17438330 MGI:3719773 NCBI chrNW_004936490:14,625,201...14,663,184 JBrowse link
G Ptn pleiotrophin involved_in ISO (MGI:3606557|PMID:15482347) RGD
UniProt
PMID:15482347 PMID:16226713 MGI:3606557 RGD:9834996 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
G Rtn4 reticulon 4 involved_in ISO (MGI:6282933|PMID:23299899) UniProt PMID:23299899 MGI:6282933 NCBI chrNW_004936491:1,407,414...1,474,031 JBrowse link
G Tnf tumor necrosis factor ISO with PCB 126 or TCDD RGD PMID:9111198 PMID:17557910 RGD:14995469 RGD:14995481 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (MGI:4943408|PMID:15962316) BHF-UCL PMID:15962316 MGI:4943408 NCBI chrNW_004936560:5,124,955...5,138,988 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004936864:150,742...179,205 JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (MGI:1352298|PMID:10652269) UniProt PMID:10652269 MGI:1352298 NCBI chrNW_004936657:2,891,171...2,895,409 JBrowse link
regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004936646:1,622,308...1,629,787 JBrowse link
G Ifng interferon gamma ISO RGD PMID:15799032 RGD:8142374 NCBI chrNW_004936545:6,139,130...6,144,543 JBrowse link
G Plau plasminogen activator, urokinase ISO RGD PMID:17587687 RGD:6484147 NCBI chrNW_004936521:5,238,128...5,243,829 JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004936514:5,819,375...5,899,324 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12170
    developmental process 5733
      anatomical structure development 5361
        animal organ development 3558
          gland development 589
            liver development 243
              determination of liver left/right asymmetry 6
              hepatoblast differentiation 3
              hepatocyte differentiation + 18
              intrahepatic bile duct development 3
              liver morphogenesis + 32
              liver regeneration 73
              liver trabecula formation 0
Path 2
Term Annotations click to browse term
  biological_process 12170
    developmental process 5733
      anatomical structure development 5361
        multicellular organism development 4910
          system development 4622
            animal organ development 3558
              gland development 589
                liver development 243
                  determination of liver left/right asymmetry 6
                  hepatoblast differentiation 3
                  hepatocyte differentiation + 18
                  intrahepatic bile duct development 3
                  liver morphogenesis + 32
                  liver regeneration 73
                  liver trabecula formation 0
paths to the root