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ONTOLOGY REPORT - ANNOTATIONS


Term:liver development
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Accession:GO:0001889 term browser browse the term
Definition:The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.


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liver development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aacs acetoacetyl-CoA synthetase ISO RGD PMID:10513626 RGD:2301023 NCBI chrNW_004955482:4,663,818...4,694,170
Ensembl chrNW_004955482:4,666,615...4,694,021
JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain acts_upstream_of_or_within ISO (MGI:3692159|PMID:16121256) MGI PMID:16121256 MGI:3692159 NCBI chrNW_004955423:17,173,648...17,199,189
Ensembl chrNW_004955423:17,172,779...17,199,090
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO RGD PMID:5166591 RGD:2326169 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806
JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 ISO RGD PMID:5166591 RGD:2326169 NCBI chrNW_004955439:21,123,886...21,142,562
Ensembl chrNW_004955439:21,122,923...21,142,480
JBrowse link
G Aco1 aconitase 1 ISO RGD PMID:755797 RGD:11552585 NCBI chrNW_004955472:3,141,473...3,170,959
Ensembl chrNW_004955472:3,141,257...3,170,959
JBrowse link
G Aco2 aconitase 2 ISO RGD PMID:755797 RGD:11552585 NCBI chrNW_004955413:27,027,341...27,065,227
Ensembl chrNW_004955413:27,027,341...27,065,227
JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:72798|PMID:7731963)
(MGI:74163|PMID:7670465)
MGI PMID:7670465 PMID:7731963 MGI:72798 MGI:74163 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:8408243 RGD:8548535 NCBI chrNW_004955415:5,515,157...5,517,198
Ensembl chrNW_004955415:5,515,697...5,516,980
JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493), (MGI:3794480|PMID:16443691), (MGI:72762|PMID:7732381), (MGI:81320|PMID:8692887) DFLAT PMID:7732381 PMID:8692887 PMID:10973493 PMID:16443691 MGI:1889403 MGI:3794480 MGI:72762 MGI:81320 NCBI chrNW_004955410:20,428,531...20,459,482 JBrowse link
G Ak2 adenylate kinase 2 ISO RGD PMID:5123889 RGD:5490208 NCBI chrNW_004955452:11,254,853...11,275,587 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:5123889 RGD:5490208 NCBI chrNW_004955434:8,998,357...9,010,468
Ensembl chrNW_004955434:9,000,158...9,011,250
JBrowse link
G Ak4 adenylate kinase 4 ISO RGD PMID:9813319 RGD:632174 NCBI chrNW_004955423:25,395,086...25,402,324
Ensembl chrNW_004955423:25,395,836...25,427,474
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:14729401 RGD:1643117 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO RGD PMID:16291827 RGD:2300311 NCBI chrNW_004955482:8,352,569...8,383,097
Ensembl chrNW_004955482:8,352,569...8,384,899
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family member A1 ISO RGD PMID:19150623 RGD:2313411 NCBI chrNW_004955462:10,998,147...11,017,360 JBrowse link
G Aldob aldolase, fructose-bisphosphate B ISO RGD PMID:8641049 RGD:2313428 NCBI chrNW_004955419:24,377,427...24,389,909
Ensembl chrNW_004955419:24,377,427...24,389,909
JBrowse link
G Arf6 ADP ribosylation factor 6 acts_upstream_of_or_within ISO (MGI:3653957|PMID:16880525) MGI PMID:16880525 MGI:3653957 NCBI chrNW_004955409:12,814,814...12,818,142
Ensembl chrNW_004955409:12,817,496...12,818,023
JBrowse link
G Arg1 arginase 1 ISO RGD PMID:8690412 RGD:4144072 NCBI chrNW_004955436:12,235,767...12,247,817
Ensembl chrNW_004955436:12,235,767...12,251,972
JBrowse link
G Asl argininosuccinate lyase ISO DNA:increased methylation:5' utr RGD PMID:9535537 PMID:10473900 RGD:1599266 RGD:1599268 NCBI chrNW_004955456:8,409,767...8,419,915 JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:9395312 PMID:10473900 RGD:1599266 RGD:4139912 NCBI chrNW_004955513:443,372...485,190
Ensembl chrNW_004955513:445,462...485,190
JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO (MGI:3719954|PMID:17699753) MGI PMID:17699753 MGI:3719954 NCBI chrNW_004955449:332,563...411,218
Ensembl chrNW_004955449:338,193...411,218
JBrowse link
G Atf7 activating transcription factor 7 involved_in ISO (MGI:3719954|PMID:17699753) MGI PMID:17699753 MGI:3719954 NCBI chrNW_004955458:803,738...898,847
Ensembl chrNW_004955458:803,738...898,967
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (MGI:3587473|PMID:15866887) MGI PMID:15866887 MGI:3587473 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO RGD PMID:8420961 RGD:13792579 NCBI chrNW_004955458:4,188,167...4,195,575
Ensembl chrNW_004955458:4,186,461...4,195,494
JBrowse link
G Atp7a ATPase copper transporting alpha ISO RGD PMID:25349135 RGD:11341669 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393
JBrowse link
G Baat bile acid-CoA:amino acid N-acyltransferase ISO RGD PMID:7575455 RGD:69770 NCBI chrNW_004955419:24,469,213...24,521,728
Ensembl chrNW_004955419:24,443,172...24,520,467
JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 ISO RGD PMID:2806552 RGD:4105456 NCBI chrNW_004955420:13,454,379...13,486,700
Ensembl chrNW_004955420:13,452,166...13,486,565
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:14160653 RGD:2303538 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
JBrowse link
G Cadm1 cell adhesion molecule 1 ISO RGD PMID:17326163 RGD:2289097 NCBI chrNW_004955412:16,673,401...17,005,082
Ensembl chrNW_004955412:16,669,099...17,005,014
JBrowse link
G Cast calpastatin ISO RGD PMID:16871587 RGD:5683869 NCBI chrNW_004955418:15,859,951...15,974,141
Ensembl chrNW_004955418:15,862,729...15,916,169
JBrowse link
G Ccnd1 cyclin D1 ISO RGD PMID:15809057 RGD:1582338 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Ccnd2 cyclin D2 ISO RGD PMID:15809057 RGD:1582338 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Ccne1 cyclin E1 ISO RGD PMID:15809057 RGD:1582338 NCBI chrNW_004955468:7,803,610...7,814,872
Ensembl chrNW_004955468:7,803,346...7,814,872
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO (MGI:6284072|PMID:30635284) UniProt PMID:30635284 MGI:6284072 NCBI chrNW_004955451:13,160,811...13,170,012
Ensembl chrNW_004955451:13,120,761...13,170,073
JBrowse link
G Cdkn2b cyclin dependent kinase inhibitor 2B ISO RGD PMID:11042273 RGD:7248763 NCBI chrNW_004955472:12,275,613...12,280,141
Ensembl chrNW_004955472:12,275,544...12,280,528
JBrowse link
G Cebpa CCAAT enhancer binding protein alpha acts_upstream_of_or_within
involved_in
ISO (MGI:3688957|PMID:17021047)
(MGI:83240|PMID:8798745)
RGD
MGI
UniProt
PMID:8798745 PMID:16172914 PMID:17021047 MGI:3688957 MGI:83240 RGD:1625368 NCBI chrNW_004955468:3,046,544...3,049,217
Ensembl chrNW_004955468:3,047,931...3,049,080
JBrowse link
G Cebpb CCAAT enhancer binding protein beta ISO RGD PMID:1377818 RGD:69946 NCBI chrNW_004955445:8,060,432...8,061,289 JBrowse link
G Cebpg CCAAT enhancer binding protein gamma involved_in ISO PMID:1377818 UniProt PMID:1377818 RGD:69946 NCBI chrNW_004955468:3,137,106...3,141,733
Ensembl chrNW_004955468:3,137,106...3,141,733
JBrowse link
G Cit citron rho-interacting serine/threonine kinase ISO RGD PMID:12411428 RGD:628497 NCBI chrNW_004955455:11,705,015...11,871,762
Ensembl chrNW_004955455:11,704,964...11,872,419
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within
ISO (MGI:3813432|PMID:17932483)
(MGI:3847632|PMID:17644732)
BHF-UCL
MGI
PMID:17644732 PMID:17932483 MGI:3813432 MGI:3847632 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677
JBrowse link
G Cp ceruloplasmin ISO RGD PMID:2332446 RGD:728241 NCBI chrNW_004955448:470,063...522,909
Ensembl chrNW_004955448:473,179...523,100
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:8690412 RGD:4144072 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246
JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17236583 RGD:1599633 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Dbp D-box binding PAR bZIP transcription factor ISO RGD PMID:2331750 RGD:727680 NCBI chrNW_004955559:1,915,424...1,921,322
Ensembl chrNW_004955559:1,916,018...1,921,075
JBrowse link
G Ddx39b DExD-box helicase 39B ISO RGD PMID:1618789 RGD:632224 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384
JBrowse link
G Dut deoxyuridine triphosphatase ISO RGD PMID:11121581 RGD:5133681 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:12454858 RGD:2289959 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Elk1 ETS transcription factor ELK1 acts_upstream_of_or_within ISO (MGI:6472092|PMID:31877385) MGI PMID:31877385 MGI:6472092 NCBI chrNW_004955516:431,081...444,871
Ensembl chrNW_004955516:430,775...444,871
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:10231554 RGD:13204733 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359
JBrowse link
G Ephx1 epoxide hydrolase 1 ISO RGD PMID:2469391 RGD:4889418 NCBI chrNW_004955520:116,363...142,983
Ensembl chrNW_004955520:116,363...128,665
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO RGD PMID:12454858 RGD:2289959 NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379
JBrowse link
G Foxm1 forkhead box M1 acts_upstream_of_or_within ISO (MGI:3522012|PMID:15531365) MGI PMID:15531365 MGI:3522012 NCBI chrNW_004955429:18,392,545...18,405,254
Ensembl chrNW_004955429:18,393,470...18,405,254
JBrowse link
G Fpgs folylpolyglutamate synthase ISO RGD PMID:1435744 RGD:2315102 NCBI chrNW_004955419:853,891...871,729
Ensembl chrNW_004955419:851,152...871,522
JBrowse link
G Fscn1 fascin actin-bundling protein 1 ISO RGD PMID:18855019 RGD:2317768 NCBI chrNW_004955460:10,402,855...10,412,459
Ensembl chrNW_004955460:10,402,855...10,412,710
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ISO RGD PMID:3996734 RGD:2302171 NCBI chrNW_004955409:10,406,248...10,424,431
Ensembl chrNW_004955409:10,406,723...10,424,431
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3525024|PMID:15578515) MGI PMID:15578515 MGI:3525024 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Hgf hepatocyte growth factor acts_upstream_of_or_within ISO (MGI:3653957|PMID:16880525) MGI PMID:16880525 MGI:3653957 NCBI chrNW_004955410:4,114,280...4,181,953
Ensembl chrNW_004955410:4,114,778...4,182,058
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:1855906|PMID:10804184), (MGI:3703395|PMID:16364283)
(MGI:3487182|PMID:15459110)
(MGI:1891782|PMID:11027604)
MGI PMID:10804184 PMID:11027604 PMID:15459110 PMID:16364283 MGI:1855906 MGI:1891782 MGI:3487182 MGI:3703395 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chrNW_004955520:2,937,131...2,941,170
Ensembl chrNW_004955520:2,936,815...2,941,170
JBrowse link
G Hmbs hydroxymethylbilane synthase ISO RGD PMID:971328 RGD:25394583 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase ISO RGD PMID:13990 RGD:2326149 NCBI chrNW_004955452:3,720,103...3,734,730
Ensembl chrNW_004955452:3,720,103...3,735,192
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO RGD PMID:5166591 RGD:2326169 NCBI chrNW_004955446:18,978,261...18,996,794
Ensembl chrNW_004955446:18,978,102...18,998,951
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chrNW_004955435:22,804,484...22,820,807
Ensembl chrNW_004955435:22,804,484...22,821,482
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (MGI:1202489|PMID:9566924) MGI PMID:9566924 MGI:1202489 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20102719 RGD:10042969 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774
JBrowse link
G Hras HRas proto-oncogene, GTPase ISO RGD PMID:2581126 RGD:14694813 NCBI chrNW_004955476:11,508,446...11,510,333
Ensembl chrNW_004955476:11,508,126...11,510,333
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase acts_upstream_of_or_within ISO (MGI:2182507|PMID:12105862) MGI PMID:12105862 MGI:2182507 NCBI chrNW_004955486:6,280,838...6,289,584
Ensembl chrNW_004955486:6,280,125...6,289,584
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2155922|PMID:11773599), (MGI:892192|PMID:9176412) MGI PMID:9176412 PMID:11773599 MGI:2155922 MGI:892192 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122
JBrowse link
G Igf2r insulin like growth factor 2 receptor ISO RGD PMID:12127995 RGD:2311626 NCBI chrNW_004955439:20,754,915...20,874,759
Ensembl chrNW_004955439:20,752,855...20,851,281
JBrowse link
G Insr insulin receptor ISO RGD PMID:6364984 RGD:14701029 NCBI chrNW_004955563:1,867,400...2,011,845
Ensembl chrNW_004955563:1,867,400...2,009,149
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO (MGI:1096257|PMID:9376320) MGI PMID:9376320 MGI:1096257 NCBI chrNW_004955590:383,810...512,854
Ensembl chrNW_004955590:384,817...626,684
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (MGI:1338596|PMID:10352021) MGI PMID:10352021 MGI:1338596 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Klf1 Kruppel like factor 1 acts_upstream_of_or_within ISO (MGI:73364|PMID:7753194) MGI PMID:7753194 MGI:73364 NCBI chrNW_004955415:31,939,994...31,943,539
Ensembl chrNW_004955415:31,939,873...31,943,545
JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO RGD PMID:1526114 RGD:11060153 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G Lipc lipase C, hepatic type ISO RGD PMID:11004003 RGD:2307448 NCBI chrNW_004955450:15,947,869...16,062,449
Ensembl chrNW_004955450:15,948,187...16,048,766
JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO RGD PMID:12162855 RGD:727721 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
G Lsr lipolysis stimulated lipoprotein receptor involved_in ISO (MGI:3052428|PMID:15265030) HGNC-UCL PMID:15265030 MGI:3052428 NCBI chrNW_004955468:4,548,774...4,563,341
Ensembl chrNW_004955468:4,548,775...4,563,988
JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (MGI:3652665|PMID:16754854) MGI PMID:16754854 MGI:3652665 NCBI chrNW_004955418:5,027,962...5,191,346
Ensembl chrNW_004955418:5,027,174...5,191,346
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:2682174|PMID:14500757) MGI PMID:14500757 MGI:2682174 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797
JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:76093|PMID:7651534) RGD
MGI
PMID:7651534 PMID:8506951 MGI:76093 RGD:2317549 NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647
JBrowse link
G Mpst mercaptopyruvate sulfurtransferase ISO RGD PMID:6573924 RGD:9685558 NCBI chrNW_004955413:23,538,648...23,543,132
Ensembl chrNW_004955413:23,538,648...23,547,120
JBrowse link
G Mrtfb myocardin related transcription factor B acts_upstream_of_or_within ISO (MGI:3695837|PMID:17183527) MGI PMID:17183527 MGI:3695837 NCBI chrNW_004955442:4,542,700...4,733,646
Ensembl chrNW_004955442:4,547,829...4,733,724
JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3045664|PMID:15226394) MGI PMID:15226394 MGI:3045664 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173
JBrowse link
G Nts neurotensin ISO RGD PMID:8342998 RGD:9743870 NCBI chrNW_004955405:23,696,258...23,758,487
Ensembl chrNW_004955405:23,748,280...23,758,529
JBrowse link
G Onecut1 one cut homeobox 1 acts_upstream_of_or_within ISO (MGI:3763866|PMID:17936262) MGI PMID:17936262 MGI:3763866 NCBI chrNW_004955409:2,181,364...2,214,636
Ensembl chrNW_004955409:2,181,346...2,207,888
JBrowse link
G Onecut2 one cut homeobox 2 acts_upstream_of_or_within ISO (MGI:3763866|PMID:17936262) MGI PMID:17936262 MGI:3763866 NCBI chrNW_004955402:41,782,281...41,839,782
Ensembl chrNW_004955402:41,782,281...41,839,782
JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:8690412 RGD:4144072 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in
acts_upstream_of_or_within
ISO PMID:12552133
(PMID:12552133)
HGNC-UCL PMID:12552133 RGD:629554 NCBI chrNW_004955464:4,424,583...4,439,805
Ensembl chrNW_004955464:4,425,435...4,439,842
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chrNW_004955497:7,281,886...7,307,969 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:5582991|PMID:24691033) MGI PMID:24691033 MGI:5582991 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (MGI:5441703|PMID:21685914) MGI PMID:21685914 MGI:5441703 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in
acts_upstream_of_or_within
ISO (PMID:11891195)
(MGI:5441703|PMID:21685914)
UniProt
MGI
PMID:11891195 PMID:21685914 MGI:5441703 NCBI chrNW_004955474:1,831,221...1,868,170
Ensembl chrNW_004955474:1,833,701...1,868,817
JBrowse link
G Pkm pyruvate kinase M1/2 ISO RGD PMID:7327170 RGD:2303137 NCBI chrNW_004955450:4,907,962...4,935,179
Ensembl chrNW_004955450:4,907,788...4,936,199
JBrowse link
G Prkcsh protein kinase C substrate 80K-H acts_upstream_of_or_within ISO (MGI:5441703|PMID:21685914) MGI PMID:21685914 MGI:5441703 NCBI chrNW_004955495:2,331,075...2,338,479
Ensembl chrNW_004955495:2,331,569...2,337,946
JBrowse link
G Proc protein C, inactivator of coagulation factors Va and VIIIa acts_upstream_of_or_within ISO (MGI:1306904|PMID:9788960) RGD
MGI
PMID:7660357 PMID:9788960 MGI:1306904 RGD:1299299 NCBI chrNW_004955459:3,097,229...3,105,566
Ensembl chrNW_004955459:3,094,120...3,104,135
JBrowse link
G Pros1 protein S ISO RGD PMID:7660357 RGD:1299299 NCBI chrNW_004955407:3,514,900...3,566,165
Ensembl chrNW_004955407:3,535,388...3,565,058
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11789987) RGD
BHF-UCL
PMID:11789987 PMID:16770575 RGD:5133274 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 ISO RGD PMID:24707720 RGD:9854625 NCBI chrNW_004955437:1,513,425...1,516,164
Ensembl chrNW_004955437:1,513,418...1,516,164
JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 acts_upstream_of_or_within ISO (MGI:3829520|PMID:18729827) MGI PMID:18729827 MGI:3829520 NCBI chrNW_004955575:1,126,978...1,156,727
Ensembl chrNW_004955575:1,126,639...1,158,181
JBrowse link
G Ptn pleiotrophin ISO RGD PMID:12057922 RGD:727382 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190
JBrowse link
G Qdpr quinoid dihydropteridine reductase ISO RGD PMID:710385 RGD:5128606 NCBI chrNW_004955480:6,646,088...6,666,866
Ensembl chrNW_004955480:6,646,088...6,669,526
JBrowse link
G Rara retinoic acid receptor alpha ISO RGD PMID:15388488 RGD:2314298 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134
JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 acts_upstream_of_or_within ISO (MGI:3689241|PMID:17015619) MGI PMID:17015619 MGI:3689241 NCBI chrNW_004955454:12,201,566...12,257,383
Ensembl chrNW_004955454:12,200,750...12,257,389
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (MGI:76008|PMID:7603567) UniProt PMID:7603567 MGI:76008 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
JBrowse link
G Rgn regucalcin ISO RGD PMID:8794449 PMID:9546611 RGD:9590173 RGD:9590212 NCBI chrNW_004955516:958,416...978,829
Ensembl chrNW_004955516:955,680...978,910
JBrowse link
G Rhbdd3 rhomboid domain containing 3 acts_upstream_of_or_within ISO (MGI:5492204|PMID:23610400) MGI PMID:23610400 MGI:5492204 NCBI chrNW_004955455:3,564,867...3,570,910
Ensembl chrNW_004955455:3,564,867...3,570,798
JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (MGI:3716248|PMID:17558409) MGI PMID:17558409 MGI:3716248 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:14729401 RGD:1643117 NCBI chrNW_004955513:3,313,544...3,386,544
Ensembl chrNW_004955513:3,335,897...3,386,994
JBrowse link
G Sec63 SEC63 homolog, protein translocation regulator acts_upstream_of_or_within ISO (MGI:5441703|PMID:21685914) MGI PMID:21685914 MGI:5441703 NCBI chrNW_004955411:33,063,056...33,126,325
Ensembl chrNW_004955411:33,063,989...33,126,105
JBrowse link
G Slc25a4 solute carrier family 25 member 4 ISO RGD PMID:9468308 RGD:9681468 NCBI chrNW_004955403:23,878,329...23,882,322
Ensembl chrNW_004955403:23,878,329...23,882,322
JBrowse link
G Slco2b1 solute carrier organic anion transporter family member 2B1 ISO RGD PMID:15345472 RGD:2316987 NCBI chrNW_004955414:16,615,012...16,664,784
Ensembl chrNW_004955414:16,614,155...16,664,485
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3610843|PMID:16287714) MGI PMID:16287714 MGI:3610843 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO (MGI:3718142|PMID:17367743) MGI PMID:17367743 MGI:3718142 NCBI chrNW_004955439:21,209,101...21,223,538
Ensembl chrNW_004955439:21,209,101...21,224,163
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004955458:644,435...677,360
Ensembl chrNW_004955458:644,378...677,441
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004955449:1,347,781...1,404,368 JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chrNW_004955504:4,360,909...4,388,964
Ensembl chrNW_004955504:4,360,453...4,391,133
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:9199345 RGD:11039429 NCBI chrNW_004955466:612,221...617,087
Ensembl chrNW_004955466:612,221...617,753
JBrowse link
G Stat5b signal transducer and activator of transcription 5B ISO RGD PMID:17565389 RGD:2291935 NCBI chrNW_004955451:16,253,645...16,295,337 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 acts_upstream_of_or_within ISO (MGI:3806427|PMID:18722179) MGI PMID:18722179 MGI:3806427 NCBI chrNW_004955414:22,322,954...22,324,412
Ensembl chrNW_004955414:22,323,031...22,324,367
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (MGI:2663364|PMID:12773577) BHF-UCL PMID:12773577 MGI:2663364 NCBI chrNW_004955423:2,573,851...2,765,353
Ensembl chrNW_004955423:2,573,795...2,765,772
JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367
JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:995499 RGD:2317236 NCBI chrNW_004955506:4,379,830...4,390,729
Ensembl chrNW_004955506:4,379,830...4,394,713
JBrowse link
G Upb1 beta-ureidopropionase 1 ISO RGD PMID:6870258 RGD:2317093 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
JBrowse link
G Upf2 UPF2 regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (MGI:4821037|PMID:20657840) MGI PMID:20657840 MGI:4821037 NCBI chrNW_004955421:27,867,663...27,962,809
Ensembl chrNW_004955421:27,861,958...27,952,835
JBrowse link
G Urod uroporphyrinogen decarboxylase ISO RGD PMID:6219675 RGD:4145103 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
G Vwf von Willebrand factor acts_upstream_of_or_within ISO (MGI:70957|PMID:7854452) MGI PMID:7854452 MGI:70957 NCBI chrNW_004955413:3,672,470...3,825,588
Ensembl chrNW_004955413:3,672,470...3,819,571
JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO (PMID:15312687) UniProt PMID:15312687 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (MGI:1352298|PMID:10652269) UniProt PMID:10652269 MGI:1352298 NCBI chrNW_004955455:3,037,885...3,041,827 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:5609934|PMID:23117660) MGI PMID:23117660 MGI:5609934 NCBI chrNW_004955537:82,724...134,609
Ensembl chrNW_004955537:81,920...134,609
JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain containing 39 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955420:9,689,076...9,727,806
Ensembl chrNW_004955420:9,690,295...9,727,835
JBrowse link
G Ccdc40 coiled-coil domain containing 40 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955506:2,783,837...2,840,248
Ensembl chrNW_004955506:2,784,548...2,838,026
JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004955564:132,497...149,399 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004955501:5,799,879...5,837,022 JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) BHF-UCL PMID:21719175 NCBI chrNW_004955474:1,831,221...1,868,170
Ensembl chrNW_004955474:1,833,701...1,868,817
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004955489:7,560,684...7,571,739
Ensembl chrNW_004955489:7,560,684...7,571,892
JBrowse link
hepatoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggt1 gamma-glutamyltransferase 1 ISO RGD PMID:10934156 RGD:14701049 NCBI chrNW_004955455:8,082,578...8,099,523 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:3720549|PMID:17580084) MGI PMID:17580084 MGI:3720549 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:11668598 RGD:2306909 NCBI chrNW_004955512:5,686,508...5,703,645 JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:12939595 RGD:4144098 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246
JBrowse link
G E2f7 E2F transcription factor 7 involved_in ISO (MGI:5449497|PMID:23064266) UniProt PMID:23064266 MGI:5449497 NCBI chrNW_004955405:16,148,640...16,187,272
Ensembl chrNW_004955405:16,148,480...16,186,282
JBrowse link
G E2f8 E2F transcription factor 8 involved_in ISO (MGI:5449497|PMID:23064266), (MGI:5449498|PMID:23064264) UniProt PMID:23064264 PMID:23064266 MGI:5449497 MGI:5449498 NCBI chrNW_004955476:197,699...215,227
Ensembl chrNW_004955476:197,630...213,441
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO RGD PMID:10934156 RGD:14701049 NCBI chrNW_004955455:8,082,578...8,099,523 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:1891782|PMID:11027604) MGI PMID:11027604 MGI:1891782 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Hnf1b HNF1 homeobox B ISO RGD PMID:18286537 RGD:2312718 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO RGD PMID:19621519 RGD:12904750 NCBI chrNW_004955445:12,925,248...12,962,501
Ensembl chrNW_004955445:12,924,662...12,984,281
JBrowse link
G Itga2 integrin subunit alpha 2 ISO RGD PMID:16458388 RGD:2307397 NCBI chrNW_004955446:14,309,516...14,421,991
Ensembl chrNW_004955446:14,309,349...14,422,170
JBrowse link
G Krt18 keratin 18 ISO RGD PMID:24340101 PMID:28941653 RGD:27226712 RGD:27226713 NCBI chrNW_004955458:227,017...230,752
Ensembl chrNW_004955458:226,805...232,728
JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO RGD PMID:17574236 RGD:2306655 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
G Prox1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:15232737) BHF-UCL PMID:15232737 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 acts_upstream_of_or_within ISO (MGI:3806427|PMID:18722179) MGI PMID:18722179 MGI:3806427 NCBI chrNW_004955414:22,322,954...22,324,412
Ensembl chrNW_004955414:22,323,031...22,324,367
JBrowse link
G Wnt1 Wnt family member 1 ISO RGD PMID:20413689 RGD:2326223 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167
JBrowse link
hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpb CCAAT enhancer binding protein beta involved_in ISO PMID:10635333
(MGI:3778721|PMID:10635333)
UniProt PMID:10635333 MGI:3778721 RGD:10047310 NCBI chrNW_004955445:8,060,432...8,061,289 JBrowse link
G Fgl1 fibrinogen like 1 involved_in ISO (PMID:19880967) UniProt PMID:19880967 NCBI chrNW_004955552:1,784,046...1,813,935
Ensembl chrNW_004955552:1,783,412...1,813,935
JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:84432|PMID:8910279) UniProt PMID:8910279 MGI:84432 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Mki67 marker of proliferation Ki-67 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173
JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:29138817 RGD:15042871 NCBI chrNW_004955405:36,160,360...36,236,258
Ensembl chrNW_004955405:36,160,049...36,237,751
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO (MGI:1860507|PMID:10888866) MGI PMID:10888866 MGI:1860507 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555
JBrowse link
G Rps6ka1 ribosomal protein S6 kinase A1 involved_in ISO (MGI:3778721|PMID:10635333) UniProt PMID:10635333 MGI:3778721 NCBI chrNW_004955452:5,905,561...5,938,096
Ensembl chrNW_004955452:5,904,762...5,939,091
JBrowse link
G Tgfa transforming growth factor alpha involved_in ISO PMID:10635333
(MGI:3778721|PMID:10635333)
UniProt PMID:10635333 MGI:3778721 RGD:10047310 NCBI chrNW_004955424:14,616,390...14,709,723
Ensembl chrNW_004955424:14,616,259...14,710,183
JBrowse link
intrahepatic bile duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO (MGI:5305417|PMID:18434600) MGI PMID:18434600 MGI:5305417 NCBI chrNW_004955514:391,305...434,198
Ensembl chrNW_004955514:387,179...434,077
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:3852603|PMID:19403103) MGI PMID:19403103 MGI:3852603 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
liver morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within ISO (MGI:3713609|PMID:17339333) MGI PMID:17339333 MGI:3713609 NCBI chrNW_004955453:9,546,554...9,629,976
Ensembl chrNW_004955453:9,564,522...9,629,976
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) MGI PMID:25446530 MGI:5616947 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO (MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:5298314 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
liver regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:8855951 RGD:8548508 NCBI chrNW_004955415:5,515,157...5,517,198
Ensembl chrNW_004955415:5,515,697...5,516,980
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 ISO RGD PMID:6895999 RGD:11035238 NCBI chrNW_004955475:2,362,368...2,382,680
Ensembl chrNW_004955475:2,362,118...2,377,864
JBrowse link
G Angpt1 angiopoietin 1 ISO RGD PMID:11549276 RGD:704403 NCBI chrNW_004955417:30,199,508...30,386,695
Ensembl chrNW_004955417:30,198,842...30,386,266
JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 ISO RGD PMID:11032760 RGD:13782137 NCBI chrNW_004955467:12,911,679...12,941,322
Ensembl chrNW_004955467:12,911,679...12,941,924
JBrowse link
G Aurka aurora kinase A acts_upstream_of_or_within ISO (PMID:19435814) MGI PMID:19435814 NCBI chrNW_004955445:2,831,073...2,853,151
Ensembl chrNW_004955445:2,831,157...2,853,357
JBrowse link
G Bcl2 BCL2 apoptosis regulator ISO RGD PMID:21503946 RGD:11531107 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Ccnd1 cyclin D1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Cebpb CCAAT enhancer binding protein beta involved_in ISO (MGI:1277818|PMID:9727068) UniProt PMID:9727068 MGI:1277818 NCBI chrNW_004955445:8,060,432...8,061,289 JBrowse link
G Cftr CF transmembrane conductance regulator ISO RGD PMID:1378998 RGD:11567227 NCBI chrNW_004955432:23,179,645...23,328,347
Ensembl chrNW_004955432:23,178,866...23,328,382
JBrowse link
G Cldn1 claudin 1 ISO RGD PMID:15826721 RGD:11344894 NCBI chrNW_004955420:17,798,974...17,815,049
Ensembl chrNW_004955420:17,798,974...17,815,205
JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:19386599 RGD:7243112 NCBI chrNW_004955518:3,740,348...3,803,540
Ensembl chrNW_004955518:3,740,348...3,803,539
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO RGD PMID:31953200 RGD:25823179 NCBI chrNW_004955422:17,105,887...17,159,696
Ensembl chrNW_004955422:17,109,256...17,159,838
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO RGD PMID:8573159 RGD:11565141 NCBI chrNW_004955597:326,601...397,112 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 ISO RGD PMID:8573159 RGD:11565141 NCBI chrNW_004955433:15,677,788...15,718,894
Ensembl chrNW_004955433:15,674,116...15,718,894
JBrowse link
G Csnk2b casein kinase 2 beta ISO RGD PMID:8573159 RGD:11565141 NCBI chrNW_004955437:210,541...215,725
Ensembl chrNW_004955437:210,838...219,694
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:2401457 PMID:20395437 RGD:10395295 RGD:38599218 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5637451|PMID:25477280) MGI PMID:25477280 MGI:5637451 NCBI chrNW_004955451:16,548,898...16,563,449
Ensembl chrNW_004955451:16,548,858...16,564,310
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5637451|PMID:25477280) MGI PMID:25477280 MGI:5637451 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:10632538 RGD:8662889 NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455
JBrowse link
G Fga fibrinogen alpha chain ISO RGD PMID:3817019 RGD:728788 NCBI chrNW_004955471:8,806,964...8,814,671
Ensembl chrNW_004955471:8,806,650...8,816,791
JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO RGD PMID:16162160 RGD:10402121 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472
JBrowse link
G Gfer growth factor, augmenter of liver regeneration ISO RGD PMID:24880092 RGD:9685725 NCBI chrNW_004955442:15,280,753...15,283,405
Ensembl chrNW_004955442:15,281,419...15,283,266
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO RGD PMID:10934156 RGD:14701049 NCBI chrNW_004955455:8,082,578...8,099,523 JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD
MGI
PMID:22024090 PMID:22790641 PMID:23740243 MGI:5515698 RGD:12832760 RGD:12911223 NCBI chrNW_004955458:5,181,761...5,193,500
Ensembl chrNW_004955458:5,185,225...5,193,196
JBrowse link
G Gli3 GLI family zinc finger 3 ISO RGD PMID:22024090 RGD:12911223 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Hamp hepcidin antimicrobial peptide ISO RGD PMID:22364558 RGD:8694419 NCBI chrNW_004955468:4,576,080...4,577,591
Ensembl chrNW_004955468:4,575,510...4,577,649
JBrowse link
G Hfe homeostatic iron regulator ISO RGD PMID:22364558 RGD:8694419 NCBI chrNW_004955483:933,269...941,070
Ensembl chrNW_004955483:932,352...941,143
JBrowse link
G Hmox1 heme oxygenase 1 ISO RGD PMID:24815159 RGD:10755743 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 ISO RGD PMID:16081591 RGD:1599972 NCBI chrNW_004955493:7,835,160...7,838,428
Ensembl chrNW_004955493:7,835,160...7,838,428
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO RGD PMID:22024090 RGD:12911223 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747
JBrowse link
G Il10 interleukin 10 ISO RGD PMID:11813605 RGD:11049526 NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779
JBrowse link
G Il18 interleukin 18 ISO RGD PMID:24412291 RGD:14696652 NCBI chrNW_004955412:13,807,361...13,826,007
Ensembl chrNW_004955412:13,806,553...13,825,634
JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:84432|PMID:8910279) UniProt PMID:8910279 MGI:84432 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Insr insulin receptor ISO RGD PMID:23633480 RGD:9685423 NCBI chrNW_004955563:1,867,400...2,011,845
Ensembl chrNW_004955563:1,867,400...2,009,149
JBrowse link
G Klkb1 kallikrein B1 ISO RGD PMID:9869390 RGD:7297052 NCBI chrNW_004955403:22,835,544...22,856,355
Ensembl chrNW_004955403:22,833,982...22,856,389
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:3335218 RGD:10059623 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G Ncl nucleolin ISO RGD PMID:7490256 RGD:9686389 NCBI chrNW_004955453:4,154,627...4,164,253
Ensembl chrNW_004955453:4,154,627...4,164,253
JBrowse link
G Nfkbia NFKB inhibitor alpha ISO RGD PMID:24512945 RGD:10413865 NCBI chrNW_004955409:25,691,673...25,695,151
Ensembl chrNW_004955409:25,691,534...25,697,520
JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:14635188 RGD:11534994 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:29138817 RGD:15042871 NCBI chrNW_004955405:36,160,360...36,236,258
Ensembl chrNW_004955405:36,160,049...36,237,751
JBrowse link
G Pcna proliferating cell nuclear antigen ISO RGD PMID:7906221 RGD:10448980 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO RGD PMID:191106 RGD:11554175 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO RGD PMID:1841628 RGD:9743904 NCBI chrNW_004955462:9,545,122...9,710,190
Ensembl chrNW_004955462:9,553,415...9,710,188
JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:15837430 RGD:2299961 NCBI chrNW_004955559:1,205,340...1,215,672
Ensembl chrNW_004955559:1,203,283...1,215,021
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:15837430 RGD:2299961 NCBI chrNW_004955409:37,369,507...37,378,034
Ensembl chrNW_004955409:37,369,234...37,378,093
JBrowse link
G Ptch1 patched 1 ISO RGD PMID:22024090 RGD:12911223 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622
JBrowse link
G Ptpn3 protein tyrosine phosphatase non-receptor type 3 ISO RGD PMID:7591957 RGD:1599982 NCBI chrNW_004955419:17,560,664...17,645,420
Ensembl chrNW_004955419:17,493,518...17,645,477
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO RGD PMID:9015365 RGD:10003155 NCBI chrNW_004955435:15,090,521...15,171,397
Ensembl chrNW_004955435:15,150,827...15,171,397
JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 ISO RGD PMID:22227930 RGD:9850085 NCBI chrNW_004955500:6,655,056...6,674,311
Ensembl chrNW_004955500:6,655,056...6,674,311
JBrowse link
G Rgn regucalcin ISO RGD PMID:7759556 RGD:9590197 NCBI chrNW_004955516:958,416...978,829
Ensembl chrNW_004955516:955,680...978,910
JBrowse link
G Rpl10 ribosomal protein L10 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955580:903,618...906,439
Ensembl chrNW_004955580:903,412...906,439
JBrowse link
G Rpl13 ribosomal protein L13 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955541:3,149,438...3,152,210
Ensembl chrNW_004955541:3,149,438...3,152,210
JBrowse link
G Rpl18 ribosomal protein L18 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955559:1,929,643...1,933,077
Ensembl chrNW_004955559:1,930,614...1,933,037
JBrowse link
G Rpl19 ribosomal protein L19 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955451:14,062,058...14,066,664
Ensembl chrNW_004955451:14,062,058...14,068,814
JBrowse link
G Rpl30 ribosomal protein L30 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955417:13,764,814...13,767,698
Ensembl chrNW_004955417:13,764,814...13,767,698
JBrowse link
G Rpl32 ribosomal protein L32 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955429:17,886,048...17,890,536
Ensembl chrNW_004955429:17,885,314...17,890,536
JBrowse link
G Rpl7 ribosomal protein L7 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955444:6,910,818...6,914,047 JBrowse link
G Rps15 ribosomal protein S15 ISO RGD PMID:2829897 RGD:11040696 NCBI chrNW_004955495:6,492,968...6,495,435
Ensembl chrNW_004955495:6,492,968...6,495,435
JBrowse link
G Rps16 ribosomal protein S16 ISO RGD PMID:6121318 RGD:11038709 NCBI chrNW_004955468:130,244...132,258
Ensembl chrNW_004955468:130,244...132,258
JBrowse link
G Rps24 ribosomal protein S24 ISO RGD PMID:7612009 RGD:11041663 NCBI chrNW_004955437:14,435,822...14,442,662
Ensembl chrNW_004955437:14,434,771...14,443,106
JBrowse link
G Serpina10 serpin family A member 10 ISO RGD PMID:8670294 RGD:729731 NCBI chrNW_004955438:16,335,201...16,345,093
Ensembl chrNW_004955438:16,335,544...16,345,094
JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:22790641 RGD:12832760 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:23633480 RGD:9685423 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:7686911 RGD:729792 NCBI chrNW_004955466:612,221...617,087
Ensembl chrNW_004955466:612,221...617,753
JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004955445:9,919,472...10,020,491
Ensembl chrNW_004955445:9,920,789...10,020,491
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:25862490 RGD:11073669 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tnf tumor necrosis factor ISO RGD PMID:9178702 RGD:14995465 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:2707640 RGD:2317422 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Ucp2 uncoupling protein 2 ISO RGD PMID:19104935 RGD:7204431 NCBI chrNW_004955414:17,592,914...17,596,477
Ensembl chrNW_004955414:17,592,914...17,596,477
JBrowse link
G Vtn vitronectin ISO RGD PMID:10988248 RGD:10003090 NCBI chrNW_004955481:4,765,078...4,768,027 JBrowse link
G Vwf von Willebrand factor ISO RGD PMID:12217600 RGD:727737 NCBI chrNW_004955413:3,672,470...3,825,588
Ensembl chrNW_004955413:3,672,470...3,819,571
JBrowse link
G Wdr35 WD repeat domain 35 ISO RGD PMID:18472094 RGD:11553927 NCBI chrNW_004955469:2,484,972...2,546,562
Ensembl chrNW_004955469:2,482,353...2,546,578
JBrowse link
negative regulation of hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frzb frizzled related protein acts_upstream_of_or_within ISO (MGI:4356222|PMID:19562671) MGI PMID:19562671 MGI:4356222 NCBI chrNW_004955403:14,598,765...14,627,997
Ensembl chrNW_004955403:14,598,765...14,631,154
JBrowse link
negative regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ceacam1 CEA cell adhesion molecule 1 involved_in ISO PMID:15467833
(MGI:3057041|PMID:15467833)
UniProt PMID:15467833 MGI:3057041 RGD:11059592 NCBI chrNW_004955555:426,894...446,235 JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:19386599 RGD:7243112 NCBI chrNW_004955518:3,740,348...3,803,540
Ensembl chrNW_004955518:3,740,348...3,803,539
JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO (MGI:5559100|PMID:24058607) MGI PMID:24058607 MGI:5559100 NCBI chrNW_004955470:12,142,997...12,158,273 JBrowse link
G Lims2 LIM zinc finger domain containing 2 acts_upstream_of_or_within ISO (MGI:5559100|PMID:24058607) MGI PMID:24058607 MGI:5559100 NCBI chrNW_004955459:2,874,282...2,913,956
Ensembl chrNW_004955459:2,864,580...2,914,263
JBrowse link
positive regulation of hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:19229878 RGD:8885195 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Foxa3 forkhead box A3 ISO RGD PMID:9878541 RGD:2315086 NCBI chrNW_004955574:293,344...301,955
Ensembl chrNW_004955574:293,344...302,002
JBrowse link
positive regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cflar CASP8 and FADD like apoptosis regulator ISO RGD PMID:16033771 RGD:11341689 NCBI chrNW_004955403:415,092...442,214
Ensembl chrNW_004955403:412,632...434,741
JBrowse link
G Fgf1 fibroblast growth factor 1 involved_in ISO PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chrNW_004955415:11,151,330...11,245,554
Ensembl chrNW_004955415:11,151,266...11,247,344
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in ISO PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chrNW_004955408:24,225,459...24,260,057
Ensembl chrNW_004955408:24,225,459...24,260,092
JBrowse link
G Hpn hepsin involved_in ISO (PMID:15614436) UniProt PMID:15614436 NCBI chrNW_004955468:4,384,630...4,399,881
Ensembl chrNW_004955468:4,384,630...4,400,379
JBrowse link
G Il18 interleukin 18 ISO RGD PMID:24412291 RGD:14696652 NCBI chrNW_004955412:13,807,361...13,826,007
Ensembl chrNW_004955412:13,806,553...13,825,634
JBrowse link
G Mdk midkine involved_in ISO (MGI:3606557|PMID:15482347) UniProt PMID:15482347 MGI:3606557 NCBI chrNW_004955422:1,655,351...1,657,026
Ensembl chrNW_004955422:1,655,358...1,657,044
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (MGI:3719773|PMID:17438330) MGI PMID:17438330 MGI:3719773 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797
JBrowse link
G Ptn pleiotrophin involved_in ISO (MGI:3606557|PMID:15482347) RGD
UniProt
PMID:15482347 PMID:16226713 MGI:3606557 RGD:9834996 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190
JBrowse link
G Rtn4 reticulon 4 involved_in ISO (MGI:6282933|PMID:23299899) UniProt PMID:23299899 MGI:6282933 NCBI chrNW_004955424:28,061,346...28,125,838 JBrowse link
G Tnf tumor necrosis factor ISO with PCB 126 or TCDD RGD PMID:9111198 PMID:17557910 RGD:14995469 RGD:14995481 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (MGI:4943408|PMID:15962316) BHF-UCL PMID:15962316 MGI:4943408 NCBI chrNW_004955436:21,566,591...21,581,551
Ensembl chrNW_004955436:21,566,423...21,578,469
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (MGI:1352298|PMID:10652269) UniProt PMID:10652269 MGI:1352298 NCBI chrNW_004955455:3,037,885...3,041,827 JBrowse link
regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004955458:5,181,761...5,193,500
Ensembl chrNW_004955458:5,185,225...5,193,196
JBrowse link
G Ifng interferon gamma ISO RGD PMID:15799032 RGD:8142374 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G Plau plasminogen activator, urokinase ISO RGD PMID:17587687 RGD:6484147 NCBI chrNW_004955437:17,995,726...18,000,542
Ensembl chrNW_004955437:17,994,537...18,000,209
JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) MGI PMID:23740243 MGI:5515698 NCBI chrNW_004955445:9,919,472...10,020,491
Ensembl chrNW_004955445:9,920,789...10,020,491
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11978
    developmental process 5679
      anatomical structure development 5308
        animal organ development 3531
          gland development 585
            liver development 235
              determination of liver left/right asymmetry 6
              hepatoblast differentiation 3
              hepatocyte differentiation + 17
              intrahepatic bile duct development 3
              liver morphogenesis + 32
              liver regeneration 72
              liver trabecula formation 0
Path 2
Term Annotations click to browse term
  biological_process 11978
    developmental process 5679
      anatomical structure development 5308
        multicellular organism development 4864
          system development 4581
            animal organ development 3531
              gland development 585
                liver development 235
                  determination of liver left/right asymmetry 6
                  hepatoblast differentiation 3
                  hepatocyte differentiation + 17
                  intrahepatic bile duct development 3
                  liver morphogenesis + 32
                  liver regeneration 72
                  liver trabecula formation 0
paths to the root