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ONTOLOGY REPORT - ANNOTATIONS

Term:phagolysosome assembly
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Accession:GO:0001845 term browser browse the term
Definition:The process that results in the fusion of a phagosome, a vesicle formed by phagocytosis, with a lysosome.
Synonyms:related_synonym: late phagosome biosynthesis;   late phagosome formation;   phagolysosome formation


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phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin, actin binding protein 1A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:126,298,946...126,303,925
Ensembl chr 7:126,298,945...126,306,959 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within IMP (PMID:12743369) MGI PMID:12743369 NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731 		JBrowse link
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 acts_upstream_of_or_within IMP (PMID:11544318) MGI PMID:11544318 NCBI chr 5:122,781,990...122,830,399
Ensembl chr 5:122,781,974...122,829,495 		JBrowse link
G Srpx sushi-repeat-containing protein involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:19368996) GO_Central
MGI		 PMID:19368996 GO_REF:0000033 NCBI chr  X:9,904,216...9,983,879
Ensembl chr  X:9,904,216...9,983,948 		JBrowse link
phagolysosome assembly involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:35,070,217...35,091,132
Ensembl chr 2:35,070,217...35,091,132 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP (MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:5698740 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor-like 8B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:108,760,020...108,800,684
Ensembl chr 6:108,760,060...108,802,239 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP (MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:5698740 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing involved_in IDA
IBA
ISO		 (MGI:6103777|PMID:28779020) UniProt
GO_Central
MGI		 PMID:28779020 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:6103777 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in IMP (MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:3841317 NCBI chr 4:138,526,558...138,590,784
Ensembl chr 4:138,526,555...138,590,793 		JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:11,503,390...11,528,640
Ensembl chr 8:11,503,518...11,528,710 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in IMP
IBA
ISO		 (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL
GO_Central
MGI		 PMID:23197834 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:5467668 NCBI chr11:78,079,253...78,083,019
Ensembl chr11:78,079,256...78,083,019 		JBrowse link
G Rab39 RAB39, member RAS oncogene family involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 9:53,595,410...53,617,532
Ensembl chr 9:53,595,410...53,617,532 		JBrowse link
G Rab7 RAB7, member RAS oncogene family involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:87,976,088...88,022,252
Ensembl chr 6:87,976,088...88,022,252 		JBrowse link
G Rab7b RAB7B, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:131,616,412...131,646,288
Ensembl chr 1:131,616,433...131,643,177 		JBrowse link
G Syt7 synaptotagmin VII involved_in IMP (MGI:3690533|PMID:16982801) UniProt PMID:16982801 MGI:3690533 NCBI chr19:10,366,142...10,430,545
Ensembl chr19:10,366,454...10,430,544 		JBrowse link
G Tmem175 transmembrane protein 175 involved_in IMP (MGI:5693670|PMID:26317472) UniProt PMID:26317472 MGI:5693670 NCBI chr 5:108,777,649...108,795,636
Ensembl chr 5:108,777,636...108,796,648 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11, spatacsin vesicle trafficking associated acts_upstream_of_or_within IMP (PMID:26284655) MGI PMID:26284655 NCBI chr 2:121,884,001...121,949,915
Ensembl chr 2:121,884,001...121,948,867 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    cellular process 17545
      vesicle-mediated transport 1629
        endocytosis 758
          phagocytosis 246
            phagolysosome assembly 17
              phagolysosome assembly involved in apoptotic cell clearance + 2
              phagosome-lysosome docking + 1
              phagosome-lysosome fusion + 12
Path 2
Term Annotations click to browse term
  biological_process 28573
    cellular process 17545
      cellular component organization or biogenesis 6954
        cellular component organization 6731
          organelle organization 3699
            vacuole organization 240
              lytic vacuole organization 105
                lysosome organization 105
                  phagolysosome assembly 17
                    phagolysosome assembly involved in apoptotic cell clearance + 2
                    phagosome-lysosome docking + 1
                    phagosome-lysosome fusion + 12
paths to the root