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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic epithelial tube formation
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Accession:GO:0001838 term browser browse the term
Definition:The morphogenesis of an embryonic epithelium into a tube-shaped structure.



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embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RET ret proto-oncogene involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513229|PMID:15569713) Ensembl
Ensembl
MGI
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr14:61,305,818...61,361,416
Ensembl chr14:61,305,841...61,361,415
JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513229|PMID:15569713) Ensembl
MGI
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr 5:41,376...93,033
Ensembl chr 5:41,786...93,177
JBrowse link
G WNT4 Wnt family member 4 acts_upstream_of_or_within ISO (MGI:3624584|PMID:16546160) MGI PMID:16546160 MGI:3624584 NCBI chr 6:80,110,238...80,138,165 JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr15:45,744,320...45,753,252
Ensembl chr15:45,742,749...45,763,773
JBrowse link
G FOLR1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 9:6,753,513...6,760,433
Ensembl chr 9:6,746,007...6,760,433
JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl
PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chr14:49,332,937...49,463,965 JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr 2:58,415,749...58,517,308
Ensembl chr 2:58,415,749...58,517,191
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1927045|PMID:11076684) Ensembl
Ensembl
MGI
PMID:11076684 GO_REF:0000107 MGI:1927045 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342
JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3814781|PMID:18606138) Ensembl
Ensembl
MGI
PMID:18606138 GO_REF:0000107 MGI:3814781 NCBI chr 4:33,759,541...33,771,625
Ensembl chr 4:33,759,542...33,771,582
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,053,380...90,080,656
JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM2B lysine demethylase 2B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,057,121...31,203,092
JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4430439|PMID:20040500) Ensembl
Ensembl
MGI
PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,313,511
JBrowse link
G MIR216-1 microRNA mir-216-1 involved_in ISO (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr 3:85,334,523...85,334,627
Ensembl chr 3:85,334,523...85,334,627
JBrowse link
G MIR217-1 microRNA mir-217-1 involved_in ISO (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr 3:85,341,255...85,341,361
Ensembl chr 3:85,341,255...85,341,361
JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588895|PMID:16054034) Ensembl
Ensembl
MGI
PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chr12:17,709,046...17,733,434
Ensembl chr12:17,709,049...17,733,438
JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G SIX1 SIX homeobox 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4939090|PMID:21212101) Ensembl
Ensembl
MGI
PMID:21212101 GO_REF:0000107 MGI:4939090 NCBI chr 3:40,825,151...40,830,085
Ensembl chr 3:40,710,043...40,830,737
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISS
ISO
(MGI:4939090|PMID:21212101) Ensembl
UniProt
Ensembl
MGI
UniProt
PMID:21212101 GO_REF:0000024 GO_REF:0000107 MGI:4939090 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA
ISS
Ensembl
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859
JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA
ISS
Ensembl
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859
JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3714576|PMID:17537789) Ensembl
Ensembl
MGI
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G WNT6 Wnt family member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2178881|PMID:11948913) Ensembl
Ensembl
MGI
PMID:11948913 GO_REF:0000107 MGI:2178881 NCBI chr15:120,901,471...120,917,359
Ensembl chr15:120,901,283...120,917,398
JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LUZP1 leucine zipper protein 1 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3818102|PMID:18801334)
GO_Central
GO_Central
Ensembl
MGI
Ensembl
PMID:18801334 PMID:21873635 GO_REF:0000107 MGI:3818102 NCBI chr 6:80,973,263...81,112,206
Ensembl chr 6:80,973,263...81,073,803
JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chr 7:25,344,924...25,468,430
Ensembl chr 7:25,344,822...25,470,470
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,091...57,676,944
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1337194|PMID:10328919) Ensembl
Ensembl
MGI
PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,181...190,674,850
JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4880797|PMID:21246654) Ensembl
MGI
PMID:21246654 GO_REF:0000107 MGI:4880797 NCBI chr 5:69,621,871...69,747,730
Ensembl chr 5:69,621,759...69,744,436
JBrowse link
G CFL1 cofilin 1 acts_upstream_of_or_within ISO (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chr 2:6,471,558...6,475,019
Ensembl chr 2:6,469,254...6,475,035
JBrowse link
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr 2:58,415,749...58,517,308
Ensembl chr 2:58,415,749...58,517,191
JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2155575|PMID:11311163) Ensembl
Ensembl
MGI
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618450|PMID:16423343) Ensembl
Ensembl
MGI
PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr17:26,417,793...26,451,707
Ensembl chr17:26,417,795...26,451,928
JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1327082|PMID:9883720) Ensembl
Ensembl
MGI
PMID:9883720 GO_REF:0000107 MGI:1327082 NCBI chr 1:270,761,641...270,906,708
Ensembl chr 1:270,761,668...270,906,711
JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chr 9:120,888,891...120,984,724
Ensembl chr 9:120,892,926...120,985,119
JBrowse link
G ADM adrenomedullin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3689296|PMID:16981008) Ensembl
Ensembl
MGI
PMID:16981008 GO_REF:0000107 MGI:3689296 NCBI chr 2:49,229,223...49,231,521
Ensembl chr 2:49,229,223...49,231,866
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:81193|PMID:8673125) MGI PMID:8673125 MGI:81193 NCBI chr 5:96,761,683...96,785,125
Ensembl chr 5:96,762,592...96,784,972
JBrowse link
G APAF1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) MGI PMID:9216040 PMID:11504943 MGI:2149166 MGI:893797 NCBI chr 5:85,166,616...85,258,751
Ensembl chr 5:85,166,628...85,258,364
JBrowse link
G ARHGAP35 Rho GTPase activating protein 35 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1926242|PMID:11044403) Ensembl
Ensembl
MGI
PMID:11044403 GO_REF:0000107 MGI:1926242 NCBI chr 6:52,711,463...52,841,295
Ensembl chr 6:52,711,901...52,841,288
JBrowse link
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,365...84,123,384
JBrowse link
G ATP9A ATPase phospholipid transporting 9A (putative) involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:52,936,169...53,072,620
Ensembl chr17:52,936,173...53,103,190
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3607949|PMID:16170314) MGI
Ensembl
PMID:16170314 GO_REF:0000107 MGI:3607949 NCBI chr 7:60,631,913...60,693,359 JBrowse link
G BCL10 BCL10 immune signaling adaptor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:130,645,427...130,653,317
Ensembl chr 4:130,645,174...130,657,995
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4429763|PMID:19850029) Ensembl
Ensembl
MGI
PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G BRD2 bromodomain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6120662|PMID:19362612) Ensembl
Ensembl
MGI
PMID:19362612 GO_REF:0000107 MGI:6120662 NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433
JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5696765|PMID:24947469) Ensembl
MGI
PMID:24947469 GO_REF:0000107 MGI:5696765 NCBI chr 8:10,779,206...10,898,189
Ensembl chr 8:10,779,332...10,898,193
JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr14:15,582...24,102 JBrowse link
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4822542|PMID:20589882)
(MGI:4880797|PMID:21246654)
(MGI:3530173|PMID:15640247)
Ensembl
MGI
PMID:15640247 PMID:20589882 PMID:21246654 GO_REF:0000107 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chr 5:69,621,871...69,747,730
Ensembl chr 5:69,621,759...69,744,436
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2384266|PMID:12149478) Ensembl
Ensembl
MGI
PMID:12149478 GO_REF:0000107 MGI:2384266 NCBI chr 1:25,155,652...25,158,517
Ensembl chr 1:25,155,664...25,160,279
JBrowse link
G CLUAP1 clusterin associated protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5509110|PMID:23742838) MGI
Ensembl
PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr 3:38,716,562...38,753,743
Ensembl chr 3:38,716,403...38,753,748
JBrowse link
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (MGI:2676511|PMID:14512015) MGI PMID:14512015 MGI:2676511 NCBI chr 9:136,850,521...137,055,249 JBrowse link
G DEAF1 DEAF1 transcription factor involved_in ISO (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chr 2:404,514...427,584
Ensembl chr 2:404,532...427,542
JBrowse link
G DLC1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chr17:1,169,709...1,637,171
Ensembl chr17:1,170,195...1,637,162
JBrowse link
G DVL2 dishevelled segment polarity protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2389015|PMID:12421720) MGI
Ensembl
PMID:12421720 GO_REF:0000107 MGI:2389015 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,579,765...52,590,292
JBrowse link
G ENAH ENAH actin regulator acts_upstream_of_or_within ISO (MGI:3054149|PMID:15371503)
(MGI:1331576|PMID:10069337)
MGI PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chr10:13,439,772...13,609,347
Ensembl chr10:13,446,426...13,609,303
JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367921|PMID:19877275) Ensembl
Ensembl
MGI
PMID:19877275 GO_REF:0000107 MGI:4367921 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,666...54,829,508
JBrowse link
G FZD3 frizzled class receptor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3616416|PMID:16495441) Ensembl
Ensembl
MGI
PMID:16495441 GO_REF:0000107 MGI:3616416 NCBI chr14:12,281,127...12,394,768
Ensembl chr14:12,281,155...12,390,530
JBrowse link
G FZD6 frizzled class receptor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3616416|PMID:16495441) Ensembl
Ensembl
MGI
PMID:16495441 GO_REF:0000107 MGI:3616416 NCBI chr 4:33,811,159...33,844,556
Ensembl chr 4:33,809,804...33,844,658
JBrowse link
G GLMN glomulin, FKBP associated protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5320488|PMID:22405651) Ensembl
Ensembl
MGI
PMID:22405651 GO_REF:0000107 MGI:5320488 NCBI chr 4:124,773,957...124,813,336
Ensembl chr 4:124,773,979...124,813,337
JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4947318|PMID:21262862) MGI
Ensembl
PMID:21262862 GO_REF:0000107 MGI:4947318 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:82,014,022...82,050,240
Ensembl chr 6:82,014,046...82,050,236
JBrowse link
G HECTD1 HECT domain E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI
PMID:9636176 PMID:15755804 GO_REF:0000107 MGI:1267118 MGI:3577662 NCBI chr 7:68,318,167...68,422,403
Ensembl chr 7:68,318,417...68,422,396
JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3828200|PMID:18930042) Ensembl
Ensembl
MGI
PMID:18930042 GO_REF:0000107 MGI:3828200 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,971
JBrowse link
G IFT57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703110|PMID:17027958) Ensembl
Ensembl
MGI
PMID:17027958 GO_REF:0000107 MGI:3703110 NCBI chr13:151,298,552...151,356,715
Ensembl chr13:151,298,554...151,357,157
JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709911|PMID:17325035) Ensembl
Ensembl
MGI
PMID:17325035 GO_REF:0000107 MGI:3709911 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463
JBrowse link
G KDM2A lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) MGI PMID:25463925 MGI:5615026 NCBI chr 2:5,238,690...5,357,799
Ensembl chr 2:5,240,287...5,357,164
JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5448135|PMID:22949634) Ensembl
Ensembl
MGI
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,759...40,154,194
JBrowse link
G KIF20B kinesin family member 20B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr14:101,512,685...101,594,703
Ensembl chr14:101,512,812...101,594,699
JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2154554|PMID:11719201) Ensembl
Ensembl
MGI
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 1:264,900,931...264,920,888
Ensembl chr 1:264,900,591...264,920,913
JBrowse link
G LIAS lipoic acid synthetase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr 8:30,699,278...30,717,009
Ensembl chr 8:30,699,330...30,720,335
JBrowse link
G LMO4 LIM domain only 4 acts_upstream_of_or_within
involved_in
ISO (MGI:3029621|PMID:14966285)
(MGI:3573996|PMID:15691703)
(MGI:3689640|PMID:16949565)
MGI
UniProt
PMID:14966285 PMID:15691703 PMID:16949565 MGI:3029621 MGI:3573996 MGI:3689640 NCBI chr 4:128,894,113...128,910,648 JBrowse link
G LOC102159820 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703464|PMID:17229766) Ensembl
MGI
PMID:17229766 GO_REF:0000107 MGI:3703464 NCBI chr 5:3,114,410...3,203,378
Ensembl chr 5:2,980,069...3,204,803
JBrowse link
G LRP2 LDL receptor related protein 2 involved_in ISS
IEA
UniProt
UniProt
Ensembl
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr15:75,565,299...75,754,604
Ensembl chr15:75,565,301...75,716,694
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3055483|PMID:15469977)
(MGI:1347661|PMID:10545599)
(MGI:4413396|PMID:19653321)
(MGI:4413372|PMID:19795512)
MGI PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839483|PMID:20630950) Ensembl
Ensembl
MGI
PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G MED18 mediator complex subunit 18 involved_in IEA UniProt GO_REF:0000104 NCBI chr 6:85,384,085...85,392,296
Ensembl chr 6:85,384,080...85,392,291
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5487695|PMID:23454480)
(MGI:4367169|PMID:19776033)
Ensembl
Ensembl
MGI
PMID:19776033 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:5487695 NCBI chr12:34,499,139...34,512,191
Ensembl chr12:34,499,141...34,512,187
JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330) BHF-UCL PMID:23704330 MGI:5503248 NCBI chr 7:88,471,317...88,533,690
Ensembl chr 7:88,471,414...88,537,600
JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:15,140,929...15,330,265
Ensembl chr 1:15,140,898...15,329,966
JBrowse link
G MTHFR methylenetetrahydrofolate reductase acts_upstream_of
involved_in
ISO
IEA
(PMID:25855017), (PMID:29222906) BHF-UCL
Ensembl
Ensembl
PMID:25855017 PMID:29222906 GO_REF:0000107 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,636...71,881,820
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr15:88,425,861...88,528,417
Ensembl chr15:88,425,141...88,528,231
JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3640733|PMID:16712836) Ensembl
MGI
Ensembl
PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI
PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr13:130,624,771...130,718,345
Ensembl chr13:130,624,823...130,719,083
JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr15:124,093,803...124,193,041
Ensembl chr15:124,095,224...124,193,011
JBrowse link
G PFN1 profilin 1 acts_upstream_of_or_within ISO (MGI:1331576|PMID:10069337) MGI PMID:10069337 MGI:1331576 NCBI chr12:51,962,642...51,965,570
Ensembl chr12:51,961,696...51,973,660
JBrowse link
G PHACTR4 phosphatase and actin regulator 4 involved_in IEA UniProt
Ensembl
UniProt
GO_REF:0000104 GO_REF:0000107 NCBI chr 6:85,411,993...85,529,441
Ensembl chr 6:85,412,180...85,528,746
JBrowse link
G PLXNB2 plexin B2 involved_in ISO (MGI:3712712|PMID:17554007) UniProt PMID:17554007 MGI:3712712 NCBI chr 5:390,347...416,805 JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,022...73,826,431
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5308523|PMID:22007132) Ensembl
Ensembl
MGI
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 2:65,074,876...65,095,564
Ensembl chr 2:65,074,870...65,095,553
JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5308523|PMID:22007132) MGI
Ensembl
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 6:129,520,397...129,636,207
Ensembl chr 6:129,519,962...129,635,517
JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095757|PMID:9262482) Ensembl
Ensembl
MGI
PMID:9262482 GO_REF:0000107 MGI:1095757 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,325...26,703,225
JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046397|PMID:15229603)
(MGI:4830023|PMID:20704721)
MGI
Ensembl
PMID:15229603 PMID:20704721 GO_REF:0000107 MGI:3046397 MGI:4830023 NCBI chr 7:38,135,675...38,205,662
Ensembl chr 7:38,135,666...38,205,657
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO (MGI:1267118|PMID:9636176)
(MGI:69552|PMID:7720556)
MGI
UniProt
PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,953
JBrowse link
G RALA RAS like proto-oncogene A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:54,548,523...54,630,746
Ensembl chr18:54,550,238...54,588,980
JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:69060|PMID:7607067) Ensembl
Ensembl
MGI
PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,442...22,085,674
JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:69060|PMID:7607067) Ensembl
Ensembl
MGI
PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,267...18,458,625
JBrowse link
G RGMA repulsive guidance molecule BMP co-receptor a involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3027667|PMID:14749425) Ensembl
Ensembl
MGI
PMID:14749425 GO_REF:0000107 MGI:3027667 NCBI chr 7:85,921,524...85,968,887
Ensembl chr 7:85,921,586...85,968,888
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (MGI:3703464|PMID:17229766) MGI PMID:17229766 MGI:3703464 NCBI chr 3:125,353,063...125,493,368
Ensembl chr 3:125,353,119...125,491,963
JBrowse link
G RPS7 ribosomal protein S7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3056222|PMID:15384171) MGI
Ensembl
Ensembl
PMID:15384171 GO_REF:0000107 MGI:3056222 NCBI chr 3:131,258,709...131,263,285
Ensembl chr 3:131,258,713...131,342,877
JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,016...33,748,704
JBrowse link
G SALL4 spalt like transcription factor 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3698636|PMID:16790473) MGI
Ensembl
PMID:16790473 GO_REF:0000107 MGI:3698636 NCBI chr17:53,082,610...53,103,023
Ensembl chr17:52,936,173...53,103,190
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO (PMID:22095531)
(MGI:5050793|PMID:21515572)
(MGI:4819429|PMID:20643356)
UniProt
MGI
PMID:20643356 PMID:21515572 PMID:22095531 MGI:4819429 MGI:5050793 NCBI chr 4:824,925...852,360 JBrowse link
G SDC4 syndecan 4 acts_upstream_of_or_within ISO (MGI:5498591|PMID:23760952) MGI PMID:23760952 MGI:5498591 NCBI chr17:47,650,387...47,670,499 JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439427|PMID:20215345)
(MGI:4438817|PMID:19966784)
Ensembl
Ensembl
MGI
PMID:19966784 PMID:20215345 GO_REF:0000107 MGI:4438817 MGI:4439427 NCBI chr 8:112,670,529...112,762,870
Ensembl chr 8:112,670,533...112,762,858
JBrowse link
G SEMA4C semaphorin 4C involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:56,750,745...56,760,835
Ensembl chr 3:56,750,419...56,760,830
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4431136|PMID:20133625) Ensembl
Ensembl
MGI
PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4429763|PMID:19850029) MGI
Ensembl
PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4429763|PMID:19850029) MGI
Ensembl
PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SHROOM3 shroom family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610718|PMID:16249236) InterPro
InterPro
MGI
PMID:16249236 GO_REF:0000002 MGI:3610718 NCBI chr 8:72,097,561...72,443,869 JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 6:64,188,265...64,242,596
Ensembl chr 6:64,188,029...64,241,556
JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360135|PMID:19592578) Ensembl
Ensembl
MGI
PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr 1:130,458,909...130,473,791
Ensembl chr 1:130,458,909...130,473,783
JBrowse link
G SPINT2 serine peptidase inhibitor, Kunitz type 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360135|PMID:19592578) Ensembl
MGI
Ensembl
PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr 6:47,181,772...47,210,564
Ensembl chr 6:47,181,768...47,210,561
JBrowse link
G ST14 ST14 transmembrane serine protease matriptase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4360135|PMID:19592578) Ensembl
Ensembl
MGI
PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr 9:56,888,246...56,929,771
Ensembl chr 9:56,888,246...56,929,771
JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (MGI:1339521|PMID:10385121) MGI PMID:10385121 MGI:1339521 NCBI chr 6:164,197,511...164,266,615
Ensembl chr 6:164,197,558...164,266,919
JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604917|PMID:16155214) Ensembl
MGI
PMID:16155214 GO_REF:0000107 MGI:3604917 NCBI chr14:113,500,001...113,628,064
Ensembl chr14:113,500,842...113,614,517
JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701028|PMID:16835439) Ensembl
Ensembl
MGI
PMID:16835439 GO_REF:0000107 MGI:3701028 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,724,976
JBrowse link
G TEAD2 TEA domain transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3763398|PMID:17868131) Ensembl
Ensembl
MGI
PMID:17868131 GO_REF:0000107 MGI:3763398 NCBI chr 6:54,448,183...54,462,325
Ensembl chr 6:54,448,183...54,462,304
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) MGI PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,169...49,349,048
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,424...8,405,771
JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr 6:103,226,395...103,234,591
Ensembl chr 6:103,226,397...103,235,856
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr14:29,390,903...29,400,454
Ensembl chr14:29,390,335...29,400,437
JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:24,602,749...24,628,263
Ensembl chr 2:24,602,783...24,626,072
JBrowse link
G TRIM71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4356244|PMID:19098426) Ensembl
Ensembl
MGI
PMID:19098426 GO_REF:0000107 MGI:4356244 NCBI chr13:18,762,043...18,835,788
Ensembl chr13:18,761,445...18,830,563
JBrowse link
G TSC1 TSC complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2137425|PMID:11438694) Ensembl
Ensembl
MGI
PMID:11438694 GO_REF:0000107 MGI:2137425 NCBI chr 1:272,636,530...272,685,948
Ensembl chr 1:272,636,532...272,685,952
JBrowse link
G TSC2 TSC complex subunit 2 acts_upstream_of_or_within ISO (MGI:1333508|PMID:10096549) MGI PMID:10096549 MGI:1333508 NCBI chr 3:39,898,924...39,935,579
Ensembl chr 3:39,898,922...39,937,371
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841513|PMID:19223390) Ensembl
Ensembl
MGI
PMID:19223390 GO_REF:0000107 MGI:3841513 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:72096|PMID:7729687) MGI
Ensembl
PMID:7729687 GO_REF:0000107 MGI:72096 NCBI chr 9:88,286,911...88,290,131 JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3703464|PMID:17229766)
(MGI:4880797|PMID:21246654)
(MGI:3046397|PMID:15229603)
(MGI:3714704|PMID:17433286)
(MGI:4438817|PMID:19966784)
(MGI:5498591|PMID:23760952)
(MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390)
(MGI:2676511|PMID:14512015)
MGI PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,053,380...90,080,656
JBrowse link
G VASP vasodilator stimulated phosphoprotein involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3054149|PMID:15371503)
GO_Central
GO_Central
Ensembl
MGI
PMID:15371503 PMID:21873635 GO_REF:0000107 MGI:3054149 NCBI chr 6:51,872,810...51,886,729
Ensembl chr 6:51,872,812...51,886,830
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714704|PMID:17433286)
(MGI:4413372|PMID:19795512)
MGI
Ensembl
PMID:17433286 PMID:19795512 GO_REF:0000107 MGI:3714704 MGI:4413372 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3624924|PMID:16598713) MGI PMID:16598713 MGI:3624924 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr11:68,840,802...68,845,441
Ensembl chr11:68,840,830...68,846,470
JBrowse link
G ZIC5 Zic family member 5 acts_upstream_of_or_within ISO (MGI:3051968|PMID:15136147) MGI PMID:15136147 MGI:3051968 NCBI chr11:68,821,733...68,830,472
Ensembl chr11:68,821,735...68,830,341
JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRPF1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (MGI:5806011|PMID:27528195) MGI PMID:27528195 MGI:5806011 NCBI chr13:66,021,047...66,037,446
Ensembl chr13:66,021,301...66,037,427
JBrowse link
G CASP8 caspase 8 acts_upstream_of_or_within ISO (MGI:3609631|PMID:12404118) MGI PMID:12404118 MGI:3609631 NCBI chr15:104,923,659...104,948,470
Ensembl chr15:104,923,953...104,948,470
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2179743|PMID:11694877) MGI
Ensembl
PMID:11694877 GO_REF:0000107 MGI:2179743 NCBI chr 1:25,155,652...25,158,517
Ensembl chr 1:25,155,664...25,160,279
JBrowse link
G COQ7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (MGI:2154585|PMID:11716496) MGI PMID:11716496 MGI:2154585 NCBI chr 3:26,366,006...26,373,604
Ensembl chr 3:26,366,000...26,373,604
JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2679893|PMID:14603322) MGI
Ensembl
PMID:14603322 GO_REF:0000107 MGI:2679893 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,971
JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3579954|PMID:15930098) Ensembl
Ensembl
MGI
PMID:15930098 GO_REF:0000107 MGI:3579954 NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,202,359...46,247,298
JBrowse link
G IPMK inositol polyphosphate multikinase acts_upstream_of_or_within ISO (MGI:3583505|PMID:15939867) MGI PMID:15939867 MGI:3583505 NCBI chr14:92,383,471...92,428,732
Ensembl chr14:92,383,517...92,428,730
JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (MGI:3607973|PMID:16260493) MGI PMID:16260493 MGI:3607973 NCBI chr 1:58,482,046...58,548,087
Ensembl chr 1:58,481,956...58,548,057
JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3603078|PMID:16000382) Ensembl
Ensembl
MGI
PMID:16000382 GO_REF:0000107 MGI:3603078 NCBI chr 6:106,917,995...107,043,144
Ensembl chr 6:106,914,006...107,040,106
JBrowse link
G NUP50 nucleoporin 50 acts_upstream_of_or_within ISO (MGI:1860670|PMID:10891500) MGI PMID:10891500 MGI:1860670 NCBI chr 5:4,194,308...4,219,410
Ensembl chr 5:4,194,308...4,219,230
JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,325...26,703,225
JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:129,797,438...129,800,568
Ensembl chr 3:129,798,704...129,800,329
JBrowse link
G SOX4 SRY-box transcription factor 4 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:16,886,834...16,895,488 JBrowse link
G STK3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 4:38,011,802...38,306,777
Ensembl chr 4:37,945,597...38,306,775
JBrowse link
G STK4 serine/threonine kinase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr17:47,387,594...47,475,705
Ensembl chr17:47,376,115...47,475,718
JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610767|PMID:16357211) Ensembl
Ensembl
MGI
PMID:16357211 GO_REF:0000107 MGI:3610767 NCBI chr14:31,953,996...32,010,202
Ensembl chr14:31,954,000...32,010,199
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2136130|PMID:11406614) MGI
Ensembl
PMID:11406614 GO_REF:0000107 MGI:2136130 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3624185|PMID:16571627)
GO_Central
GO_Central
Ensembl
MGI
PMID:16571627 PMID:21873635 GO_REF:0000107 MGI:3624185 NCBI chr 6:63,617,787...63,628,965
Ensembl chr 6:63,617,789...63,629,229
JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3624185|PMID:16571627)
GO_Central
MGI
GO_Central
Ensembl
Ensembl
PMID:16571627 PMID:21873635 GO_REF:0000107 MGI:3624185 NCBI chr12:52,581,687...52,590,266
Ensembl chr12:52,579,765...52,590,292
JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (MGI:3821448|PMID:19008950) MGI PMID:19008950 MGI:3821448 NCBI chr13:122,075,851...122,092,975
Ensembl chr13:122,076,003...122,092,971
JBrowse link
G FZD1 frizzled class receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4837757|PMID:20940229) Ensembl
MGI
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 9:71,346,994...71,356,488
Ensembl chr 9:71,349,988...71,352,104
JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4837757|PMID:20940229) Ensembl
MGI
Ensembl
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr12:18,740,417...18,742,301
Ensembl chr12:18,740,653...18,742,420
JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4819429|PMID:20643356) Ensembl
Ensembl
MGI
PMID:20643356 GO_REF:0000107 MGI:4819429 NCBI chr 6:82,014,022...82,050,240
Ensembl chr 6:82,014,046...82,050,236
JBrowse link
G LOC102159820 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830023|PMID:20704721) Ensembl
MGI
Ensembl
PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr 5:3,114,410...3,203,378
Ensembl chr 5:2,980,069...3,204,803
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830023|PMID:20704721) Ensembl
Ensembl
MGI
PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr 7:38,135,675...38,205,662
Ensembl chr 7:38,135,666...38,205,657
JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3793375|PMID:18257070) MGI
Ensembl
Ensembl
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3793375|PMID:18257070) Ensembl
MGI
Ensembl
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SFRP5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr14:109,120,382...109,125,655
Ensembl chr14:109,119,822...109,125,686
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3624185|PMID:16571627)
(MGI:4830023|PMID:20704721)
(MGI:3793375|PMID:18257070)
(MGI:4819429|PMID:20643356)
(MGI:3821448|PMID:19008950)
(MGI:4837757|PMID:20940229)
MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,053,380...90,080,656
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830282|PMID:19056682) Ensembl
Ensembl
MGI
PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA
ISS
Ensembl
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859
JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:22,936,602...22,965,929
Ensembl chr16:22,936,601...22,965,886
JBrowse link
G SIX1 SIX homeobox 1 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
G SIX4 SIX homeobox 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:189,670,390...189,682,378
Ensembl chr 1:189,670,390...189,682,783
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4438817|PMID:19966784) Ensembl
MGI
Ensembl
PMID:19966784 GO_REF:0000107 MGI:4438817 NCBI chr 8:112,670,529...112,762,870
Ensembl chr 8:112,670,533...112,762,858
JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDNF glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr16:22,936,602...22,965,929
Ensembl chr16:22,936,601...22,965,886
JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF7 growth differentiation factor 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1353705|PMID:10693795) Ensembl
Ensembl
MGI
PMID:10693795 GO_REF:0000107 MGI:1353705 NCBI chr 3:117,586,188...117,592,541
Ensembl chr 3:117,588,431...117,592,466
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15821257) Ensembl
Ensembl
UniProt
PMID:15821257 GO_REF:0000107 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,409,115...64,411,006
JBrowse link
G IRX1 iroquois homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17875669) Ensembl
Ensembl
UniProt
PMID:17875669 GO_REF:0000107 NCBI chr16:77,695,704...77,701,089
Ensembl chr16:77,695,710...77,701,037
JBrowse link
G IRX2 iroquois homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17875669) Ensembl
Ensembl
UniProt
PMID:17875669 GO_REF:0000107 NCBI chr16:78,305,869...78,322,776
Ensembl chr16:78,305,898...78,318,071
JBrowse link
G IRX3 iroquois homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17875669) Ensembl
Ensembl
UniProt
PMID:17875669 GO_REF:0000107 NCBI chr 6:31,044,919...31,049,067
Ensembl chr 6:31,046,098...31,048,822
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,521,296...118,932,446
JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA
ISS
Ensembl
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859
JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:22,936,602...22,965,929
Ensembl chr16:22,936,601...22,965,886
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:136,617,041...136,629,293
Ensembl chr 1:136,617,069...136,629,292
JBrowse link
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1270048|PMID:9637690) Ensembl
Ensembl
MGI
PMID:9637690 GO_REF:0000107 MGI:1270048 NCBI chr 4:129,101,900...129,258,372 JBrowse link
G NOG noggin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17278
    developmental process 6628
      anatomical structure formation involved in morphogenesis 1312
        tube formation 185
          epithelial tube formation 171
            embryonic epithelial tube formation 159
              embryonic heart tube formation + 1
              nephron tubule formation + 21
              neural tube formation + 136
              primary neural tube formation + 121
              secondary neural tube formation 0
Path 2
Term Annotations click to browse term
  biological_process 17278
    developmental process 6628
      anatomical structure development 6181
        tissue development 2138
          tissue morphogenesis 722
            morphogenesis of an epithelium 604
              epithelial tube morphogenesis 406
                epithelial tube formation 171
                  embryonic epithelial tube formation 159
                    embryonic heart tube formation + 1
                    nephron tubule formation + 21
                    neural tube formation + 136
                    primary neural tube formation + 121
                    secondary neural tube formation 0
paths to the root