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ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic epithelial tube formation
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Accession:GO:0001838 term browser browse the term
Definition:The morphogenesis of an embryonic epithelium into a tube-shaped structure.


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embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RET ret proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3513229|PMID:15569713) Ensembl
Ensembl
MGI		 PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr10:43,077,069...43,130,351
Ensembl chr10:43,077,064...43,130,351 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3513229|PMID:15569713) Ensembl
Ensembl
MGI		 PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr22:50,672,823...50,733,212
Ensembl chr22:50,674,415...50,733,212 		JBrowse link
G WNT4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3624584|PMID:16546160) Ensembl
Ensembl
MGI		 PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 1:22,117,313...22,143,097
Ensembl chr 1:22,117,313...22,143,969 		JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP3 caspase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl		 PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 4:184,627,696...184,649,447
Ensembl chr 4:184,627,696...184,649,509 		JBrowse link
G FOLR1 folate receptor alpha involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:72,189,709...72,196,323
Ensembl chr11:72,189,558...72,196,323 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5050793|PMID:21515572) Ensembl
MGI
Ensembl		 PMID:21515572 GO_REF:0000107 MGI:5050793 NCBI chr 8:101,492,439...101,681,200
Ensembl chr 8:101,492,439...101,669,726 		JBrowse link
G SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chr22:24,270,831...24,417,738
Ensembl chr22:24,270,817...24,417,739 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr19:19,385,843...19,508,932
Ensembl chr19:19,385,826...19,508,932 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chr 6:10,396,677...10,419,659
Ensembl chr 6:10,393,186...10,419,659 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1927045|PMID:11076684) Ensembl
Ensembl
MGI		 PMID:11076684 GO_REF:0000107 MGI:1927045 NCBI chr 5:154,474,972...154,478,227
Ensembl chr 5:154,474,972...154,478,227 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3814781|PMID:18606138) Ensembl
Ensembl
MGI		 PMID:18606138 GO_REF:0000107 MGI:3814781 NCBI chr 8:103,371,538...103,382,989
Ensembl chr 8:103,371,538...103,382,989 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chr 1:160,400,564...160,428,670
Ensembl chr 1:160,400,564...160,428,670 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM2B lysine demethylase 2B involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:121,408,461...121,582,279
Ensembl chr12:121,429,096...121,581,023 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1B HNF1 homeobox B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4430439|PMID:20040500) MGI
Ensembl
Ensembl		 PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,059 		JBrowse link
G MIR216A microRNA 216a involved_in ISO (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr 2:55,988,950...55,989,059
Ensembl chr 2:55,988,950...55,989,059 		JBrowse link
G MIR216B microRNA 216b involved_in ISO (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr 2:56,000,714...56,000,795
Ensembl chr 2:56,000,714...56,000,795 		JBrowse link
G MIR217 microRNA 217 involved_in ISO (MGI:6359623|PMID:31367007) MGI PMID:31367007 MGI:6359623 NCBI chr 2:55,982,967...55,983,076
Ensembl chr 2:55,982,967...55,983,076 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3588895|PMID:16054034) Ensembl
Ensembl
MGI		 PMID:16054034 GO_REF:0000107 MGI:3588895 NCBI chr17:46,833,189...46,886,738
Ensembl chr17:46,833,201...46,886,730 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chr10:100,735,396...100,829,944
Ensembl chr10:100,735,396...100,829,944 		JBrowse link
G SIX1 SIX homeobox 1 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:60,643,421...60,649,477
Ensembl chr14:60,643,421...60,658,259 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr10:100,735,396...100,829,944
Ensembl chr10:100,735,396...100,829,944 		JBrowse link
G PAX8 paired box 8 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:113,215,997...113,278,921
Ensembl chr 2:113,215,997...113,278,921 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:4939090|PMID:21212101) UniProt
Ensembl
UniProt
MGI		 PMID:21212101 GO_REF:0000024 GO_REF:0000107 MGI:4939090 NCBI chr16:981,770...986,979
Ensembl chr16:981,770...986,979 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:4939090|PMID:21212101) UniProt
UniProt
Ensembl
MGI		 PMID:21212101 GO_REF:0000024 GO_REF:0000107 MGI:4939090 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3714576|PMID:17537789) Ensembl
Ensembl
MGI		 PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096 		JBrowse link
G WNT6 Wnt family member 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2178881|PMID:11948913) Ensembl
Ensembl
MGI		 PMID:11948913 GO_REF:0000107 MGI:2178881 NCBI chr 2:218,859,805...218,874,233
Ensembl chr 2:218,859,805...218,874,233 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LUZP1 leucine zipper protein 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:3818102|PMID:18801334)		 GO_Central
Ensembl
GO_Central
MGI		 PMID:18801334 PMID:21873635 GO_REF:0000107 MGI:3818102 NCBI chr 1:23,083,642...23,178,122
Ensembl chr 1:23,084,030...23,177,808 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP5 bone morphogenetic protein 5 involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:55,753,653...55,875,590
Ensembl chr 6:55,753,653...55,875,590 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1337194|PMID:10328919) Ensembl
Ensembl
MGI		 PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4880797|PMID:21246654) Ensembl
Ensembl
MGI		 PMID:21246654 GO_REF:0000107 MGI:4880797 NCBI chr22:17,359,949...17,558,151
Ensembl chr22:17,359,949...17,558,151 		JBrowse link
G CFL1 cofilin 1 acts_upstream_of_or_within ISO (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chr11:65,854,673...65,858,180
Ensembl chr11:65,823,022...65,862,026 		JBrowse link
G GATAD2A GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chr19:19,385,843...19,508,932
Ensembl chr19:19,385,826...19,508,932 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2155575|PMID:11311163) Ensembl
Ensembl
MGI		 PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951 		JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3618450|PMID:16423343) Ensembl
Ensembl
MGI		 PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1327082|PMID:9883720) Ensembl
Ensembl
MGI		 PMID:9883720 GO_REF:0000107 MGI:1327082 NCBI chr 9:130,713,043...130,887,675
Ensembl chr 9:130,713,016...130,887,675 		JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chr 1:179,099,330...179,229,677
Ensembl chr 1:179,099,330...179,229,684 		JBrowse link
G ADM adrenomedullin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3689296|PMID:16981008) Ensembl
Ensembl
MGI		 PMID:16981008 GO_REF:0000107 MGI:3689296 NCBI chr11:10,305,073...10,307,397
Ensembl chr11:10,305,073...10,307,397 		JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:81193|PMID:8673125) MGI PMID:8673125 MGI:81193 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784 		JBrowse link
G APAF1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) MGI
Ensembl
Ensembl		 PMID:9216040 PMID:11504943 GO_REF:0000107 MGI:2149166 MGI:893797 NCBI chr12:98,645,290...98,735,433
Ensembl chr12:98,645,290...98,735,433 		JBrowse link
G ARHGAP35 Rho GTPase activating protein 35 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1926242|PMID:11044403) Ensembl
Ensembl
MGI		 PMID:11044403 GO_REF:0000107 MGI:1926242 NCBI chr19:46,860,997...47,005,077
Ensembl chr19:46,860,997...47,005,077 		JBrowse link
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:3607949|PMID:16170314) BHF-UCL
Ensembl
BHF-UCL
MGI		 PMID:16170314 GO_REF:0000024 GO_REF:0000107 MGI:3607949 NCBI chr15:72,686,207...72,738,473
Ensembl chr15:72,686,179...72,738,475 		JBrowse link
G BCL10 BCL10 immune signaling adaptor involved_in ISS
IEA		 (PMID:11163238) UniProt
Ensembl
UniProt		 PMID:11163238 GO_REF:0000107 NCBI chr 1:85,265,776...85,276,632
Ensembl chr 1:85,265,776...85,276,632 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4429763|PMID:19850029) Ensembl
Ensembl
MGI		 PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G BRD2 bromodomain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:6120662|PMID:19362612) Ensembl
Ensembl
MGI		 PMID:19362612 GO_REF:0000107 MGI:6120662 NCBI chr 6:32,968,594...32,981,505
Ensembl chr 6:32,968,594...32,981,505 		JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5696765|PMID:24947469) Ensembl
Ensembl
MGI		 PMID:24947469 GO_REF:0000107 MGI:5696765 NCBI chr 4:15,469,865...15,601,557
Ensembl chr 4:15,469,865...15,601,552 		JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5912686|PMID:28817564) MGI
Ensembl
Ensembl		 PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chr 9:87,966,441...87,974,533
Ensembl chr 9:87,966,441...87,974,753 		JBrowse link
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4822542|PMID:20589882)
(MGI:4880797|PMID:21246654)
(MGI:3530173|PMID:15640247)		 Ensembl
Ensembl
MGI		 PMID:15640247 PMID:20589882 PMID:21246654 GO_REF:0000107 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chr22:17,359,949...17,558,151
Ensembl chr22:17,359,949...17,558,151 		JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (MGI:3703464|PMID:17229766) UniProt
MGI
Ensembl
UniProt		 PMID:17229766 GO_REF:0000024 GO_REF:0000107 MGI:3703464 NCBI chr22:46,361,174...46,537,620
Ensembl chr22:46,360,834...46,537,620 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2384266|PMID:12149478) Ensembl
Ensembl
MGI		 PMID:12149478 GO_REF:0000107 MGI:2384266 NCBI chr 6:139,371,807...139,374,648
Ensembl chr 6:139,371,807...139,374,648 		JBrowse link
G CLUAP1 clusterin associated protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5509110|PMID:23742838) MGI
Ensembl		 PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr16:3,495,427...3,539,048
Ensembl chr16:3,500,976...3,539,048 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:2676511|PMID:14512015) BHF-UCL
Ensembl
BHF-UCL
MGI		 PMID:14512015 GO_REF:0000024 GO_REF:0000107 MGI:2676511 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818 		JBrowse link
G DEAF1 DEAF1 transcription factor involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr11:644,220...707,083
Ensembl chr11:644,233...707,118 		JBrowse link
G DLC1 DLC1 Rho GTPase activating protein involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:3529660|PMID:15710412) UniProt
MGI
UniProt		 PMID:15710412 GO_REF:0000024 MGI:3529660 NCBI chr 8:13,083,361...13,604,620
Ensembl chr 8:13,083,361...13,604,610 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:2389015|PMID:12421720) BHF-UCL
Ensembl
BHF-UCL
MGI		 PMID:12421720 GO_REF:0000024 GO_REF:0000107 MGI:2389015 NCBI chr17:7,225,342...7,234,517
Ensembl chr17:7,225,342...7,234,517 		JBrowse link
G ENAH ENAH actin regulator acts_upstream_of_or_within ISO (MGI:1331576|PMID:10069337)
(MGI:3054149|PMID:15371503)		 MGI PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chr 1:225,486,829...225,653,878
Ensembl chr 1:225,486,765...225,653,142 		JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within		 IMP
ISS
ISO		 (PMID:21840926)
(MGI:4367921|PMID:19877275)		 UniProt
UniProt
MGI		 PMID:19877275 PMID:21840926 GO_REF:0000024 MGI:4367921 NCBI chr19:49,806,866...49,813,553
Ensembl chr19:49,806,866...49,817,376 		JBrowse link
G FZD3 frizzled class receptor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3616416|PMID:16495441) Ensembl
Ensembl
MGI		 PMID:16495441 GO_REF:0000107 MGI:3616416 NCBI chr 8:28,494,212...28,574,258
Ensembl chr 8:28,494,205...28,574,267 		JBrowse link
G FZD6 frizzled class receptor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3616416|PMID:16495441) Ensembl
Ensembl
MGI		 PMID:16495441 GO_REF:0000107 MGI:3616416 NCBI chr 8:103,298,494...103,332,866
Ensembl chr 8:103,298,433...103,332,866 		JBrowse link
G GLMN glomulin, FKBP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5320488|PMID:22405651) Ensembl
Ensembl
MGI		 PMID:22405651 GO_REF:0000107 MGI:5320488 NCBI chr 1:92,246,402...92,370,844
Ensembl chr 1:92,246,402...92,298,987 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:4947318|PMID:21262862) UniProt
UniProt
Ensembl
MGI		 PMID:21262862 GO_REF:0000024 GO_REF:0000107 MGI:4947318 NCBI chr 8:101,492,439...101,681,200
Ensembl chr 8:101,492,439...101,669,726 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:24,319,357...24,364,482
Ensembl chr 1:24,199,558...24,364,482 		JBrowse link
G HECTD1 HECT domain E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI		 PMID:9636176 PMID:15755804 GO_REF:0000107 MGI:1267118 MGI:3577662 NCBI chr14:31,100,117...31,207,793
Ensembl chr14:31,100,117...31,207,804 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr 3:129,440,224...129,520,507
Ensembl chr 3:129,429,607...129,520,510 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3828200|PMID:18930042) Ensembl
Ensembl
MGI		 PMID:18930042 GO_REF:0000107 MGI:3828200 NCBI chr 2:27,444,377...27,489,743
Ensembl chr 2:27,444,377...27,489,805 		JBrowse link
G IFT57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3703110|PMID:17027958) Ensembl
Ensembl
MGI		 PMID:17027958 GO_REF:0000107 MGI:3703110 NCBI chr 3:108,160,812...108,222,424
Ensembl chr 3:108,160,812...108,222,435 		JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3709911|PMID:17325035) Ensembl
Ensembl
MGI		 PMID:17325035 GO_REF:0000107 MGI:3709911 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367 		JBrowse link
G KDM2A lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) MGI PMID:25463925 MGI:5615026 NCBI chr11:67,119,263...67,258,082
Ensembl chr11:67,119,263...67,258,082 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5448135|PMID:22949634) Ensembl
Ensembl
MGI		 PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779 		JBrowse link
G KIF20B kinesin family member 20B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr10:89,701,590...89,774,934
Ensembl chr10:89,701,590...89,774,939 		JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2154554|PMID:11719201) Ensembl
Ensembl
MGI		 PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 9:124,011,768...124,033,301
Ensembl chr 9:124,001,670...124,033,301 		JBrowse link
G LIAS lipoic acid synthetase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr 4:39,459,056...39,479,506
Ensembl chr 4:39,459,004...39,485,109 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:3573996|PMID:15691703)
(MGI:3029621|PMID:14966285)		 UniProt
UniProt
Ensembl
MGI		 PMID:14966285 PMID:15691703 GO_REF:0000024 GO_REF:0000107 MGI:3029621 MGI:3573996 NCBI chr 1:87,328,880...87,348,923
Ensembl chr 1:87,328,880...87,348,923 		JBrowse link
G LRP2 LDL receptor related protein 2 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:169,127,109...169,362,534
Ensembl chr 2:169,127,109...169,362,534 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1347661|PMID:10545599)
(MGI:4413372|PMID:19795512)
(MGI:4413396|PMID:19653321)
(MGI:3055483|PMID:15469977)		 MGI PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4839483|PMID:20630950) Ensembl
Ensembl
MGI		 PMID:20630950 GO_REF:0000107 MGI:4839483 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,543...71,144,103 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367169|PMID:19776033)
(MGI:5487695|PMID:23454480)		 MGI
Ensembl
Ensembl		 PMID:19776033 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:5487695 NCBI chr17:58,205,441...58,219,255
Ensembl chr17:58,205,441...58,219,605 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:64,388,353...64,460,025
Ensembl chr14:64,388,031...64,463,457 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:150,865,702...151,101,887
Ensembl chr 6:150,865,679...151,101,887 		JBrowse link
G MTHFR methylenetetrahydrofolate reductase acts_upstream_of NAS
IMP		 (PMID:9349452)
(PMID:25855017), (PMID:29222906)		 BHF-UCL
BHF-UCL		 PMID:9349452 PMID:25855017 PMID:29222906 NCBI chr 1:11,785,723...11,805,964
Ensembl chr 1:11,785,723...11,806,455 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3640733|PMID:16712836) Ensembl
MGI
Ensembl		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611 		JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3577662|PMID:15755804) Ensembl
Ensembl
MGI		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr 3:193,593,208...193,697,811
Ensembl chr 3:193,593,144...193,697,811 		JBrowse link
G PAX2 paired box 2 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr10:100,735,396...100,829,944
Ensembl chr10:100,735,396...100,829,944 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 2:222,199,887...222,298,998
Ensembl chr 2:222,199,887...222,298,998 		JBrowse link
G PFN1 profilin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1331576|PMID:10069337) MGI
Ensembl
Ensembl		 PMID:10069337 GO_REF:0000107 MGI:1331576 NCBI chr17:4,945,652...4,948,530
Ensembl chr17:4,945,652...4,949,061 		JBrowse link
G PHACTR4 phosphatase and actin regulator 4 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:28,369,740...28,500,364
Ensembl chr 1:28,369,582...28,500,364 		JBrowse link
G PLXNB2 plexin B2 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr22:50,274,979...50,307,646
Ensembl chr22:50,274,979...50,307,646 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IMP (PMID:21901791) UniProt
UniProt		 PMID:21901791 NCBI chr12:42,456,757...42,589,746
Ensembl chr12:42,456,757...42,590,355 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5308523|PMID:22007132) Ensembl
Ensembl
MGI		 PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:14,091,688...14,117,762
Ensembl chr19:14,091,688...14,118,084 		JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5308523|PMID:22007132) Ensembl
Ensembl
MGI		 PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr 1:84,078,079...84,238,498
Ensembl chr 1:84,078,062...84,238,498 		JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1095757|PMID:9262482) Ensembl
Ensembl
MGI		 PMID:9262482 GO_REF:0000107 MGI:1095757 NCBI chr 9:95,442,980...95,516,971
Ensembl chr 9:95,442,980...95,517,057 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4830023|PMID:20704721)
(MGI:3046397|PMID:15229603)		 MGI
Ensembl		 PMID:15229603 PMID:20704721 GO_REF:0000107 MGI:3046397 MGI:4830023 NCBI chr 6:43,076,314...43,161,715
Ensembl chr 6:43,076,307...43,161,719 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within
involved_in		 ISO (MGI:1267118|PMID:9636176)
(MGI:69552|PMID:7720556)		 MGI
UniProt		 PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chr 6:57,186,992...57,222,307
Ensembl chr 6:57,186,992...57,222,307 		JBrowse link
G RALA RAS like proto-oncogene A involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 7:39,623,572...39,708,120
Ensembl chr 7:39,623,565...39,708,120 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:69060|PMID:7607067) Ensembl
Ensembl
MGI		 PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr17:40,309,180...40,357,643
Ensembl chr17:40,309,180...40,357,643 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:69060|PMID:7607067) Ensembl
Ensembl
MGI		 PMID:7607067 GO_REF:0000107 MGI:69060 NCBI chr12:53,210,569...53,232,209
Ensembl chr12:53,210,567...53,232,980 		JBrowse link
G RGMA repulsive guidance molecule BMP co-receptor a involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3027667|PMID:14749425) Ensembl
Ensembl
MGI		 PMID:14749425 GO_REF:0000107 MGI:3027667 NCBI chr15:93,035,271...93,089,211
Ensembl chr15:93,035,271...93,089,211 		JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (MGI:3703464|PMID:17229766) MGI PMID:17229766 MGI:3703464 NCBI chr 2:11,179,759...11,345,437
Ensembl chr 2:11,179,759...11,348,330 		JBrowse link
G RPS7 ribosomal protein S7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3056222|PMID:15384171) Ensembl
Ensembl
MGI		 PMID:15384171 GO_REF:0000107 MGI:3056222 NCBI chr 2:3,575,260...3,580,920
Ensembl chr 2:3,575,260...3,580,920 		JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chr16:51,135,982...51,152,334
Ensembl chr16:51,135,982...51,152,334 		JBrowse link
G SALL4 spalt like transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3698636|PMID:16790473) Ensembl
Ensembl
MGI		 PMID:16790473 GO_REF:0000107 MGI:3698636 NCBI chr20:51,782,331...51,802,521
Ensembl chr20:51,782,331...51,802,521 		JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 IMP
ISO
IEA		 (PMID:22095531)
(MGI:5050793|PMID:21515572)
(MGI:4819429|PMID:20643356)		 UniProt
MGI
UniProt
Ensembl		 PMID:20643356 PMID:21515572 PMID:22095531 GO_REF:0000107 MGI:4819429 MGI:5050793 NCBI chr 8:143,790,925...143,815,773
Ensembl chr 8:143,790,920...143,815,773 		JBrowse link
G SDC4 syndecan 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5498591|PMID:23760952) Ensembl
Ensembl
MGI		 PMID:23760952 GO_REF:0000107 MGI:5498591 NCBI chr20:45,325,288...45,348,424
Ensembl chr20:45,325,288...45,348,424 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4438817|PMID:19966784)
(MGI:4439427|PMID:20215345)		 Ensembl
Ensembl
MGI		 PMID:19966784 PMID:20215345 GO_REF:0000107 MGI:4438817 MGI:4439427 NCBI chr 4:109,433,815...109,540,896
Ensembl chr 4:109,433,772...109,540,896 		JBrowse link
G SEMA4C semaphorin 4C involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:96,859,718...96,870,830
Ensembl chr 2:96,859,718...96,870,757 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4431136|PMID:20133625) Ensembl
Ensembl
MGI		 PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chr 3:47,016,436...47,164,840
Ensembl chr 3:47,016,428...47,164,113 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4429763|PMID:19850029) MGI
Ensembl		 PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4429763|PMID:19850029) MGI
Ensembl		 PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083 		JBrowse link
G SHROOM3 shroom family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3610718|PMID:16249236) InterPro
InterPro
MGI		 PMID:16249236 GO_REF:0000002 MGI:3610718 NCBI chr 4:76,435,229...76,783,253
Ensembl chr 4:76,435,229...76,783,253 		JBrowse link
G SKI SKI proto-oncogene involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:1095997|PMID:9284043) BHF-UCL
BHF-UCL
MGI		 PMID:9284043 GO_REF:0000024 MGI:1095997 NCBI chr 1:2,228,319...2,310,213
Ensembl chr 1:2,228,319...2,310,213 		JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4360135|PMID:19592578) Ensembl
Ensembl
MGI		 PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr15:40,844,048...40,858,207
Ensembl chr15:40,844,018...40,858,207 		JBrowse link
G SPINT2 serine peptidase inhibitor, Kunitz type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4360135|PMID:19592578) Ensembl
MGI
Ensembl		 PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr19:38,264,573...38,292,615
Ensembl chr19:38,244,035...38,292,615 		JBrowse link
G ST14 ST14 transmembrane serine protease matriptase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4360135|PMID:19592578) Ensembl
Ensembl
MGI		 PMID:19592578 GO_REF:0000107 MGI:4360135 NCBI chr11:130,159,782...130,210,362
Ensembl chr11:130,159,782...130,210,362 		JBrowse link
G STIL STIL centriolar assembly protein involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:1339521|PMID:10385121) BHF-UCL
BHF-UCL
MGI		 PMID:10385121 GO_REF:0000024 MGI:1339521 NCBI chr 1:47,250,139...47,314,896
Ensembl chr 1:47,250,139...47,314,892 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3604917|PMID:16155214) Ensembl
Ensembl
MGI		 PMID:16155214 GO_REF:0000107 MGI:3604917 NCBI chr10:102,502,819...102,633,535
Ensembl chr10:102,503,972...102,633,535 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3701028|PMID:16835439) Ensembl
Ensembl
MGI		 PMID:16835439 GO_REF:0000107 MGI:3701028 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700 		JBrowse link
G TEAD2 TEA domain transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3763398|PMID:17868131) Ensembl
Ensembl
MGI		 PMID:17868131 GO_REF:0000107 MGI:3763398 NCBI chr19:49,340,595...49,362,416
Ensembl chr19:49,340,595...49,362,457 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) MGI PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chr 6:10,396,677...10,419,659
Ensembl chr 6:10,393,186...10,419,659 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS BHF-UCL
BHF-UCL		 GO_REF:0000024 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619 		JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chr18:3,412,009...3,459,978
Ensembl chr18:3,411,608...3,459,978 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4453264|PMID:20178780) Ensembl
Ensembl
MGI		 PMID:20178780 GO_REF:0000107 MGI:4453264 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr11:36,483,769...36,510,272
Ensembl chr11:36,483,769...36,510,272 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4356244|PMID:19098426) Ensembl
Ensembl
MGI		 PMID:19098426 GO_REF:0000107 MGI:4356244 NCBI chr 3:32,817,997...32,897,824
Ensembl chr 3:32,817,997...32,897,824 		JBrowse link
G TSC1 TSC complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2137425|PMID:11438694) Ensembl
Ensembl
MGI		 PMID:11438694 GO_REF:0000107 MGI:2137425 NCBI chr 9:132,891,349...132,945,378
Ensembl chr 9:132,891,348...132,946,874 		JBrowse link
G TSC2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:1333508|PMID:10096549) UniProt
UniProt
MGI		 PMID:10096549 GO_REF:0000024 MGI:1333508 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491 		JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3841513|PMID:19223390) Ensembl
Ensembl
MGI		 PMID:19223390 GO_REF:0000107 MGI:3841513 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:72096|PMID:7729687) Ensembl
Ensembl
MGI		 PMID:7729687 GO_REF:0000107 MGI:72096 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:3046397|PMID:15229603)
(MGI:2676511|PMID:14512015)
(MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390)
(MGI:3703464|PMID:17229766)
(MGI:4880797|PMID:21246654)
(MGI:3714704|PMID:17433286)
(MGI:4438817|PMID:19966784)
(MGI:5498591|PMID:23760952)		 UniProt
UniProt
MGI		 PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... GO_REF:0000024 MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chr 1:160,400,564...160,428,670
Ensembl chr 1:160,400,564...160,428,670 		JBrowse link
G VASP vasodilator stimulated phosphoprotein involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:3054149|PMID:15371503)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:15371503 PMID:21873635 GO_REF:0000107 MGI:3054149 NCBI chr19:45,507,479...45,526,983
Ensembl chr19:45,506,579...45,526,983 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3714704|PMID:17433286)
(MGI:4413372|PMID:19795512)		 MGI
Ensembl		 PMID:17433286 PMID:19795512 GO_REF:0000107 MGI:3714704 MGI:4413372 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3624924|PMID:16598713) MGI PMID:16598713 MGI:3624924 NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057 		JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr13:99,981,784...99,986,765
Ensembl chr13:99,981,784...99,986,765 		JBrowse link
G ZIC5 Zic family member 5 acts_upstream_of_or_within ISO (MGI:3051968|PMID:15136147) MGI PMID:15136147 MGI:3051968 NCBI chr13:99,962,964...99,971,909
Ensembl chr13:99,962,964...99,971,767 		JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRPF1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (MGI:5806011|PMID:27528195) MGI PMID:27528195 MGI:5806011 NCBI chr 3:9,731,735...9,748,015
Ensembl chr 3:9,731,729...9,748,019 		JBrowse link
G CASP8 caspase 8 acts_upstream_of_or_within ISO (MGI:3609631|PMID:12404118) MGI PMID:12404118 MGI:3609631 NCBI chr 2:201,233,443...201,287,711
Ensembl chr 2:201,233,443...201,361,836 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2179743|PMID:11694877) MGI
Ensembl		 PMID:11694877 GO_REF:0000107 MGI:2179743 NCBI chr 6:139,371,807...139,374,648
Ensembl chr 6:139,371,807...139,374,648 		JBrowse link
G COQ7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (MGI:2154585|PMID:11716496) MGI PMID:11716496 MGI:2154585 NCBI chr16:19,067,614...19,083,097
Ensembl chr16:19,067,614...19,080,095 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2679893|PMID:14603322) MGI
Ensembl		 PMID:14603322 GO_REF:0000107 MGI:2679893 NCBI chr 2:27,444,377...27,489,743
Ensembl chr 2:27,444,377...27,489,805 		JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3579954|PMID:15930098) Ensembl
Ensembl
MGI		 PMID:15930098 GO_REF:0000107 MGI:3579954 NCBI chr20:43,590,937...43,647,299
Ensembl chr20:43,590,937...43,647,299 		JBrowse link
G IPMK inositol polyphosphate multikinase acts_upstream_of_or_within ISO (MGI:3583505|PMID:15939867) MGI PMID:15939867 MGI:3583505 NCBI chr10:58,191,517...58,267,894
Ensembl chr10:58,191,517...58,267,894 		JBrowse link
G MAP3K7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (MGI:3607973|PMID:16260493) MGI PMID:16260493 MGI:3607973 NCBI chr 6:90,513,579...90,587,072
Ensembl chr 6:90,513,573...90,587,072 		JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3603078|PMID:16000382) Ensembl
Ensembl
MGI		 PMID:16000382 GO_REF:0000107 MGI:3603078 NCBI chr18:21,704,916...21,870,953
Ensembl chr18:21,704,957...21,870,953 		JBrowse link
G NUP50 nucleoporin 50 acts_upstream_of_or_within ISO (MGI:1860670|PMID:10891500) MGI PMID:10891500 MGI:1860670 NCBI chr22:45,163,925...45,188,017
Ensembl chr22:45,163,925...45,188,017 		JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:95,442,980...95,516,971
Ensembl chr 9:95,442,980...95,517,057 		JBrowse link
G SHH sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385 		JBrowse link
G SOX4 SRY-box transcription factor 4 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,593,751...21,598,619
Ensembl chr 6:21,593,751...21,598,619 		JBrowse link
G STK3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI		 PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 8:98,343,975...98,942,610
Ensembl chr 8:98,371,228...98,942,827 		JBrowse link
G STK4 serine/threonine kinase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4412133|PMID:19786569) Ensembl
Ensembl
MGI		 PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr20:44,966,512...45,080,021
Ensembl chr20:44,966,479...45,080,021 		JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3610767|PMID:16357211) Ensembl
Ensembl
MGI		 PMID:16357211 GO_REF:0000107 MGI:3610767 NCBI chr12:110,614,129...110,649,430
Ensembl chr12:110,614,027...110,663,431 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2136130|PMID:11406614) MGI
Ensembl		 PMID:11406614 GO_REF:0000107 MGI:2136130 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4830023|PMID:20704721) Ensembl
MGI
Ensembl		 PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr22:46,361,174...46,537,620
Ensembl chr22:46,360,834...46,537,620 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 (PMID:21873635)
(MGI:3624185|PMID:16571627)		 GO_Central
MGI
GO_Central
Ensembl		 PMID:16571627 PMID:21873635 GO_REF:0000107 MGI:3624185 NCBI chr 1:1,335,278...1,349,418
Ensembl chr 1:1,335,276...1,349,418 		JBrowse link
G DVL1P1 dishevelled segment polarity protein 1 pseudogene 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr22:19,253,131...19,253,469 JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 (PMID:21873635)
(MGI:3624185|PMID:16571627)		 GO_Central
MGI
GO_Central
Ensembl		 PMID:16571627 PMID:21873635 GO_REF:0000107 MGI:3624185 NCBI chr17:7,225,342...7,234,517
Ensembl chr17:7,225,342...7,234,517 		JBrowse link
G DVL3 dishevelled segment polarity protein 3 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:21873635)
(MGI:3821448|PMID:19008950)		 GO_Central
GO_Central
MGI		 PMID:19008950 PMID:21873635 MGI:3821448 NCBI chr 3:184,155,377...184,173,614
Ensembl chr 3:184,155,377...184,173,614 		JBrowse link
G FZD1 frizzled class receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4837757|PMID:20940229) MGI
Ensembl
Ensembl		 PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 7:91,264,433...91,271,326
Ensembl chr 7:91,264,433...91,271,326 		JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4837757|PMID:20940229) Ensembl
Ensembl
MGI		 PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr17:44,557,484...44,561,262
Ensembl chr17:44,557,484...44,561,262 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4819429|PMID:20643356) Ensembl
Ensembl
MGI		 PMID:20643356 GO_REF:0000107 MGI:4819429 NCBI chr 1:24,319,357...24,364,482
Ensembl chr 1:24,199,558...24,364,482 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4830023|PMID:20704721) Ensembl
Ensembl
MGI		 PMID:20704721 GO_REF:0000107 MGI:4830023 NCBI chr 6:43,076,314...43,161,715
Ensembl chr 6:43,076,307...43,161,719 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3793375|PMID:18257070) Ensembl
Ensembl
MGI		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3793375|PMID:18257070) Ensembl
MGI
Ensembl		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083 		JBrowse link
G SFRP5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr10:97,766,751...97,771,999
Ensembl chr10:97,766,751...97,771,999 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:4837757|PMID:20940229)
(MGI:4830023|PMID:20704721)
(MGI:3624185|PMID:16571627)
(MGI:3821448|PMID:19008950)
(MGI:4819429|PMID:20643356)
(MGI:3793375|PMID:18257070)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr 1:160,400,564...160,428,670
Ensembl chr 1:160,400,564...160,428,670 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4830282|PMID:19056682) Ensembl
Ensembl
MGI		 PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IDA (PMID:8657307) UniProt
UniProt		 PMID:8657307 NCBI chr 5:37,812,677...37,840,041
Ensembl chr 5:37,812,677...37,840,041 		JBrowse link
G SIX1 SIX homeobox 1 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:60,643,421...60,649,477
Ensembl chr14:60,643,421...60,658,259 		JBrowse link
G SIX4 SIX homeobox 4 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:60,709,539...60,724,351
Ensembl chr14:60,709,539...60,724,351 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4438817|PMID:19966784) Ensembl
MGI
Ensembl		 PMID:19966784 GO_REF:0000107 MGI:4438817 NCBI chr 4:109,433,815...109,540,896
Ensembl chr 4:109,433,772...109,540,896 		JBrowse link
regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IC (PMID:18371931) BHF-UCL
BHF-UCL		 PMID:18371931 NCBI chr 3:132,680,609...132,722,409
Ensembl chr 3:132,680,609...132,722,432 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDNF glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr 5:37,812,677...37,840,041
Ensembl chr 5:37,812,677...37,840,041 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF7 growth differentiation factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1353705|PMID:10693795) Ensembl
Ensembl
MGI		 PMID:10693795 GO_REF:0000107 MGI:1353705 NCBI chr 2:20,667,144...20,679,243
Ensembl chr 2:20,667,144...20,679,243 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15821257) Ensembl
Ensembl
UniProt		 PMID:15821257 GO_REF:0000107 NCBI chr 1:2,528,745...2,530,263
Ensembl chr 1:2,528,745...2,530,263 		JBrowse link
G IRX1 iroquois homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17875669) Ensembl
Ensembl
UniProt		 PMID:17875669 GO_REF:0000107 NCBI chr 5:3,595,832...3,601,403
Ensembl chr 5:3,595,832...3,601,403 		JBrowse link
G IRX2 iroquois homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17875669) Ensembl
Ensembl
UniProt		 PMID:17875669 GO_REF:0000107 NCBI chr 5:2,735,635...2,751,677
Ensembl chr 5:2,745,845...2,751,677 		JBrowse link
G IRX3 iroquois homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17875669) Ensembl
Ensembl
UniProt		 PMID:17875669 GO_REF:0000107 NCBI chr16:54,283,304...54,286,787
Ensembl chr16:54,283,304...54,286,787 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 5:37,812,677...37,840,041
Ensembl chr 5:37,812,677...37,840,041 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr15:32,718,004...32,745,106
Ensembl chr15:32,718,004...32,745,106 		JBrowse link
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1270048|PMID:9637690) MGI
Ensembl		 PMID:9637690 GO_REF:0000107 MGI:1270048 NCBI chr 1:86,914,635...87,109,982
Ensembl chr 1:86,914,635...87,109,982 		JBrowse link
G NOG noggin involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19643
    developmental process 7530
      anatomical structure formation involved in morphogenesis 1428
        tube formation 190
          epithelial tube formation 175
            embryonic epithelial tube formation 161
              embryonic heart tube formation + 1
              nephron tubule formation + 23
              neural tube formation + 136
              primary neural tube formation + 121
              secondary neural tube formation 0
Path 2
Term Annotations click to browse term
  biological_process 19643
    developmental process 7530
      anatomical structure development 6889
        tissue development 2398
          tissue morphogenesis 773
            morphogenesis of an epithelium 651
              epithelial tube morphogenesis 419
                epithelial tube formation 175
                  embryonic epithelial tube formation 161
                    embryonic heart tube formation + 1
                    nephron tubule formation + 23
                    neural tube formation + 136
                    primary neural tube formation + 121
                    secondary neural tube formation 0
paths to the root