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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic epithelial tube formation
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Accession:GO:0001838 term browser browse the term
Definition:The morphogenesis of an embryonic epithelium into a tube-shaped structure.


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embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within ISO (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO (MGI:3513229|PMID:15569713) MGI PMID:15569713 MGI:3513229 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796
JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (MGI:3624584|PMID:16546160) MGI PMID:16546160 MGI:3624584 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989
JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within ISO (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like acts_upstream_of_or_within ISO (MGI:6101898|PMID:26787558) MGI PMID:26787558 MGI:6101898 NCBI chrNW_004955455:7,739,105...7,879,489 JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80520|PMID:8622765) MGI PMID:8622765 MGI:80520 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929
JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (MGI:1927045|PMID:11076684) MGI PMID:11076684 MGI:1927045 NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994
JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chrNW_004955417:27,520,420...27,525,907 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3814781|PMID:18606138) MGI PMID:18606138 MGI:3814781 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547
JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171
JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:4430439|PMID:20040500) MGI PMID:20040500 MGI:4430439 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO (MGI:3588895|PMID:16054034) MGI PMID:16054034 MGI:3588895 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416
JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069
JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
G Pax8 paired box 8 involved_in ISO (MGI:3704067|PMID:17314325) UniProt PMID:17314325 MGI:3704067 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796
JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (MGI:4939090|PMID:21212101) MGI PMID:21212101 MGI:4939090 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4939090|PMID:21212101) MGI PMID:21212101 MGI:4939090 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744
JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744
JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3714576|PMID:17537789) MGI PMID:17537789 MGI:3714576 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (MGI:2178881|PMID:11948913) MGI PMID:11948913 MGI:2178881 NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976
JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 acts_upstream_of_or_within ISO (MGI:3818102|PMID:18801334) MGI PMID:18801334 MGI:3818102 NCBI chrNW_004955452:3,105,827...3,188,762
Ensembl chrNW_004955452:3,109,663...3,189,416
JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004955411:450,674...557,213
Ensembl chrNW_004955411:450,674...558,650
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:1332253|PMID:10079236) BHF-UCL PMID:10079236 MGI:1332253 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (MGI:1337194|PMID:10328919) MGI PMID:10328919 MGI:1337194 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 cat eye syndrome chromosome region, candidate 2 acts_upstream_of_or_within ISO (MGI:4880797|PMID:21246654) MGI PMID:21246654 MGI:4880797 NCBI chrNW_004955454:5,581,985...5,643,685
Ensembl chrNW_004955454:5,581,981...5,640,712
JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chrNW_004955422:19,479,181...19,482,571
Ensembl chrNW_004955422:19,479,181...19,482,571
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) MGI PMID:17565372 MGI:3762244 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chrNW_004955415:26,825,284...26,843,438
Ensembl chrNW_004955415:26,825,284...26,843,438
JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:1327082|PMID:9883720) MGI PMID:9883720 MGI:1327082 NCBI chrNW_004955406:18,435,984...18,527,967
Ensembl chrNW_004955406:18,437,672...18,527,698
JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within ISO (MGI:3689296|PMID:16981008) MGI PMID:16981008 MGI:3689296 NCBI chrNW_004955414:25,951,473...25,953,593
Ensembl chrNW_004955414:25,951,349...25,953,645
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) MGI PMID:9216040 PMID:11504943 MGI:2149166 MGI:893797 NCBI chrNW_004955405:34,619,780...34,693,616
Ensembl chrNW_004955405:34,623,267...34,693,677
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO (MGI:1926242|PMID:11044403) MGI PMID:11044403 MGI:1926242 NCBI chrNW_004955574:915,604...984,744
Ensembl chrNW_004955574:915,325...984,744
JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (MGI:3607949|PMID:16170314) MGI PMID:16170314 MGI:3607949 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719
JBrowse link
G Bcl10 BCL10 immune signaling adaptor involved_in ISO (MGI:1930354|PMID:11163238) UniProt PMID:11163238 MGI:1930354 NCBI chrNW_004955423:8,710,231...8,720,530
Ensembl chrNW_004955423:8,709,890...8,722,050
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Brd2 bromodomain containing 2 acts_upstream_of_or_within ISO (MGI:6120662|PMID:19362612) MGI PMID:19362612 MGI:6120662 NCBI chrNW_004955437:1,584,890...1,592,486
Ensembl chrNW_004955437:1,584,479...1,592,826
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (MGI:5696765|PMID:24947469) MGI PMID:24947469 MGI:5696765 NCBI chrNW_004955480:8,404,239...8,514,792
Ensembl chrNW_004955480:8,400,284...8,514,736
JBrowse link
G Cecr2 cat eye syndrome chromosome region, candidate 2 acts_upstream_of_or_within ISO (MGI:4880797|PMID:21246654)
(MGI:4822542|PMID:20589882)
(MGI:3530173|PMID:15640247)
MGI PMID:15640247 PMID:20589882 PMID:21246654 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chrNW_004955454:5,581,985...5,643,685
Ensembl chrNW_004955454:5,581,981...5,640,712
JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
ISO (MGI:2667273|PMID:12842012)
(MGI:3703464|PMID:17229766)
UniProt
MGI
PMID:12842012 PMID:17229766 MGI:2667273 MGI:3703464 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:2384266|PMID:12149478) MGI PMID:12149478 MGI:2384266 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677
JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (MGI:5509110|PMID:23742838) MGI PMID:23742838 MGI:5509110 NCBI chrNW_004955442:13,843,952...13,890,082
Ensembl chrNW_004955442:13,842,784...13,885,860
JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chrNW_004955476:11,398,187...11,422,633
Ensembl chrNW_004955476:11,398,448...11,423,654
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chrNW_004955463:3,599,415...3,981,187
Ensembl chrNW_004955463:3,598,985...3,990,849
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:2389015 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Enah ENAH actin regulator acts_upstream_of_or_within ISO (MGI:1331576|PMID:10069337)
(MGI:3054149|PMID:15371503)
MGI PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chrNW_004955520:310,482...374,800
Ensembl chrNW_004955520:308,070...371,922
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO (PMID:21840926)
(MGI:4438317|PMID:19767740), (MGI:5296277|PMID:21840926)
(MGI:4367921|PMID:19877275)
UniProt
MGI
PMID:19767740 PMID:19877275 PMID:21840926 MGI:4367921 MGI:4438317 MGI:5296277 NCBI chrNW_004955559:1,112,670...1,117,620
Ensembl chrNW_004955559:1,112,855...1,117,413
JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO (MGI:3616416|PMID:16495441) MGI PMID:16495441 MGI:3616416 NCBI chrNW_004955403:50,899,658...50,959,077
Ensembl chrNW_004955403:50,899,523...50,959,071
JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO (MGI:3616416|PMID:16495441) MGI PMID:16495441 MGI:3616416 NCBI chrNW_004955417:27,465,730...27,493,752
Ensembl chrNW_004955417:27,465,701...27,494,790
JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO (MGI:5320488|PMID:22405651) MGI PMID:22405651 MGI:5320488 NCBI chrNW_004955423:2,195,428...2,233,389
Ensembl chrNW_004955423:2,195,423...2,232,706
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO (MGI:4947318|PMID:21262862)
(MGI:4835348|PMID:20654612), (MGI:4867118|PMID:20978075)
MGI
UniProt
PMID:20654612 PMID:20978075 PMID:21262862 MGI:4835348 MGI:4867118 MGI:4947318 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297
JBrowse link
G Grhl3 grainyhead like transcription factor 3 involved_in ISO (MGI:3689640|PMID:16949565), (MGI:4835348|PMID:20654612) UniProt PMID:16949565 PMID:20654612 MGI:3689640 MGI:4835348 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in
ISO (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)
(MGI:3714713|PMID:17442300)
MGI
UniProt
PMID:9636176 PMID:15755804 PMID:17442300 MGI:1267118 MGI:3577662 MGI:3714713 NCBI chrNW_004955409:29,373,572...29,470,623
Ensembl chrNW_004955409:29,373,572...29,470,623
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (MGI:3828200|PMID:18930042) MGI PMID:18930042 MGI:3828200 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026
JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (MGI:3703110|PMID:17027958) MGI PMID:17027958 MGI:3703110 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (MGI:3709911|PMID:17325035) MGI PMID:17325035 MGI:3709911 NCBI chrNW_004955451:16,192,228...16,197,103
Ensembl chrNW_004955451:16,191,186...16,197,574
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) MGI PMID:25463925 MGI:5615026 NCBI chrNW_004955422:18,201,243...18,308,163
Ensembl chrNW_004955422:18,200,758...18,308,163
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832
JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chrNW_004955425:3,261,269...3,313,891
Ensembl chrNW_004955425:3,261,450...3,308,416
JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (MGI:2154554|PMID:11719201) MGI PMID:11719201 MGI:2154554 NCBI chrNW_004955419:3,999,364...4,019,543
Ensembl chrNW_004955419:3,998,242...4,018,875
JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chrNW_004955443:7,889,274...7,907,560
Ensembl chrNW_004955443:7,889,467...7,907,437
JBrowse link
G Lmo4 LIM domain only 4 involved_in
acts_upstream_of_or_within
ISO (MGI:3689640|PMID:16949565)
(MGI:3029621|PMID:14966285)
(MGI:3573996|PMID:15691703)
UniProt
MGI
PMID:14966285 PMID:15691703 PMID:16949565 MGI:3029621 MGI:3573996 MGI:3689640 NCBI chrNW_004955423:6,849,542...6,865,928
Ensembl chrNW_004955423:6,849,555...6,866,137
JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (MGI:5603707|PMID:24639464) UniProt PMID:24639464 MGI:5603707 NCBI chrNW_004955449:5,155,109...5,314,886
Ensembl chrNW_004955449:5,160,946...5,314,948
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3055483|PMID:15469977)
(MGI:1347661|PMID:10545599)
(MGI:4413372|PMID:19795512)
(MGI:4413396|PMID:19653321)
MGI PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053
JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (MGI:5487695|PMID:23454480)
(MGI:4367169|PMID:19776033)
MGI PMID:19776033 PMID:23454480 MGI:4367169 MGI:5487695 NCBI chrNW_004955451:4,805,542...4,818,233
Ensembl chrNW_004955451:4,804,838...4,821,556
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330) BHF-UCL PMID:23704330 MGI:5503248 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISO (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chrNW_004955439:10,432,732...10,621,991
Ensembl chrNW_004955439:10,438,883...10,621,768
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO (PMID:25855017), (PMID:29222906) BHF-UCL PMID:25855017 PMID:29222906 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (MGI:3640733|PMID:16712836) MGI PMID:16712836 MGI:3640733 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chrNW_004955420:14,927,490...15,007,082
Ensembl chrNW_004955420:14,923,575...15,007,081
JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chrNW_004955453:11,463,407...11,558,001
Ensembl chrNW_004955453:11,463,379...11,558,006
JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within ISO (MGI:1331576|PMID:10069337) MGI PMID:10069337 MGI:1331576 NCBI chrNW_004955467:10,357,838...10,360,651
Ensembl chrNW_004955467:10,357,838...10,360,651
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004955452:7,505,647...7,593,302
Ensembl chrNW_004955452:7,532,966...7,596,546
JBrowse link
G Plxnb2 plexin B2 involved_in ISO (MGI:3712712|PMID:17554007) UniProt PMID:17554007 MGI:3712712 NCBI chrNW_004955413:33,297,617...33,314,371
Ensembl chrNW_004955413:33,298,317...33,309,961
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:21901791) UniProt PMID:21901791 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chrNW_004955415:32,794,172...32,807,944
Ensembl chrNW_004955415:32,793,718...32,812,930
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO (MGI:5308523|PMID:22007132) MGI PMID:22007132 MGI:5308523 NCBI chrNW_004955423:9,630,308...9,747,820
Ensembl chrNW_004955423:9,629,378...9,747,820
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (MGI:1095757|PMID:9262482) MGI PMID:9262482 MGI:1095757 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622
JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (MGI:3046397|PMID:15229603)
(MGI:4830023|PMID:20704721)
MGI PMID:15229603 PMID:20704721 MGI:3046397 MGI:4830023 NCBI chrNW_004955437:9,037,933...9,094,237
Ensembl chrNW_004955437:9,037,661...9,094,287
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISO (MGI:69552|PMID:7720556)
(MGI:1267118|PMID:9636176)
UniProt
MGI
PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634
JBrowse link
G Rala RAS like proto-oncogene A involved_in ISO (MGI:5504565|PMID:23063435) CACAO PMID:23063435 MGI:5504565 NCBI chrNW_004955460:3,789,136...3,853,315
Ensembl chrNW_004955460:3,789,136...3,808,676
JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134
JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chrNW_004955458:480,257...501,172
Ensembl chrNW_004955458:480,070...501,356
JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO (MGI:3027667|PMID:14749425) MGI PMID:14749425 MGI:3027667 NCBI chrNW_004955416:21,221,023...21,261,831
Ensembl chrNW_004955416:21,221,023...21,261,831
JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO (MGI:3703464|PMID:17229766) MGI PMID:17229766 MGI:3703464 NCBI chrNW_004955487:5,856,190...5,972,408
Ensembl chrNW_004955487:5,859,204...5,972,401
JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chrNW_004955487:3,793,168...3,798,007
Ensembl chrNW_004955487:3,792,870...3,798,153
JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171
JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (MGI:3698636|PMID:16790473) MGI PMID:16790473 MGI:3698636 NCBI chrNW_004955445:6,824,797...6,841,141
Ensembl chrNW_004955445:6,824,770...6,842,187
JBrowse link
G Scrib scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO (PMID:22095531)
(MGI:5050793|PMID:21515572)
(MGI:4819429|PMID:20643356)
UniProt
MGI
PMID:20643356 PMID:21515572 PMID:22095531 MGI:4819429 MGI:5050793 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO (MGI:5498591|PMID:23760952) MGI PMID:23760952 MGI:5498591 NCBI chrNW_004955445:11,990,916...12,009,178
Ensembl chrNW_004955445:11,990,792...12,011,553
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (MGI:4438817|PMID:19966784)
(MGI:4439427|PMID:20215345)
MGI PMID:19966784 PMID:20215345 MGI:4438817 MGI:4439427 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862
JBrowse link
G Sema4c semaphorin 4C involved_in ISO (MGI:4881530|PMID:21122816) UniProt PMID:21122816 MGI:4881530 NCBI chrNW_004955470:4,213,006...4,220,167
Ensembl chrNW_004955470:4,213,006...4,220,169
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (MGI:4431136|PMID:20133625) MGI PMID:20133625 MGI:4431136 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:4429763|PMID:19850029) MGI PMID:19850029 MGI:4429763 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO (MGI:3610718|PMID:16249236) MGI PMID:16249236 MGI:3610718 NCBI chrNW_004955433:1,135,589...1,423,449
Ensembl chrNW_004955433:1,358,444...1,422,498
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (MGI:4360135|PMID:19592578) MGI PMID:19592578 MGI:4360135 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within ISO (MGI:4360135|PMID:19592578) MGI PMID:19592578 MGI:4360135 NCBI chrNW_004955468:1,142,718...1,181,210
Ensembl chrNW_004955468:1,143,118...1,169,632
JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within ISO (MGI:4360135|PMID:19592578) MGI PMID:19592578 MGI:4360135 NCBI chrNW_004955412:31,091,313...31,129,050
Ensembl chrNW_004955412:31,090,504...31,129,050
JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (MGI:1339521|PMID:10385121) MGI PMID:10385121 MGI:1339521 NCBI chrNW_004955464:11,213,265...11,288,648
Ensembl chrNW_004955464:11,228,667...11,289,648
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (MGI:3604917|PMID:16155214) MGI PMID:16155214 MGI:3604917 NCBI chrNW_004955485:7,805,244...7,925,414
Ensembl chrNW_004955485:7,808,131...7,925,677
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3701028|PMID:16835439) MGI PMID:16835439 MGI:3701028 NCBI chrNW_004955439:15,675,680...15,683,542
Ensembl chrNW_004955439:15,676,095...15,683,554
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (MGI:3763398|PMID:17868131) MGI PMID:17868131 MGI:3763398 NCBI chrNW_004955559:1,450,706...1,465,947
Ensembl chrNW_004955559:1,450,706...1,465,947
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) MGI PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (MGI:74339|PMID:7600998) BHF-UCL PMID:7600998 MGI:74339 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3697552|PMID:17082251) MGI PMID:17082251 MGI:3697552 NCBI chrNW_004955402:7,130,809...7,138,945
Ensembl chrNW_004955402:7,129,484...7,138,340
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (MGI:2181331|PMID:11007897) UniProt PMID:11007897 MGI:2181331 NCBI chrNW_004955422:9,925,765...9,950,354
Ensembl chrNW_004955422:9,932,680...9,949,100
JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (MGI:4356244|PMID:19098426) MGI PMID:19098426 MGI:4356244 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432
JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO (MGI:2137425|PMID:11438694) MGI PMID:11438694 MGI:2137425 NCBI chrNW_004955513:2,197,037...2,244,992
Ensembl chrNW_004955513:2,197,037...2,244,992
JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO (MGI:1333508|PMID:10096549) MGI PMID:10096549 MGI:1333508 NCBI chrNW_004955442:15,178,356...15,216,978
Ensembl chrNW_004955442:15,178,487...15,216,362
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (MGI:3841513|PMID:19223390) MGI PMID:19223390 MGI:3841513 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:72096|PMID:7729687) MGI PMID:7729687 MGI:72096 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:4438817|PMID:19966784)
(MGI:3714704|PMID:17433286)
(MGI:4880797|PMID:21246654)
(MGI:3703464|PMID:17229766)
(MGI:5498591|PMID:23760952)
(MGI:2676511|PMID:14512015)
(MGI:3046397|PMID:15229603)
(MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390)
MGI PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547
JBrowse link
G Vasp vasodilator stimulated phosphoprotein acts_upstream_of_or_within ISO (MGI:3054149|PMID:15371503) MGI PMID:15371503 MGI:3054149 NCBI chrNW_004955574:21,569...33,705
Ensembl chrNW_004955574:21,911...34,197
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3714704|PMID:17433286)
(MGI:4413372|PMID:19795512)
MGI PMID:17433286 PMID:19795512 MGI:3714704 MGI:4413372 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3624924|PMID:16598713) MGI PMID:16598713 MGI:3624924 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chrNW_004955404:10,731,987...10,735,599 JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO (MGI:3051968|PMID:15136147) MGI PMID:15136147 MGI:3051968 NCBI chrNW_004955404:10,745,551...10,752,006
Ensembl chrNW_004955404:10,745,620...10,751,872
JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing 1 acts_upstream_of_or_within ISO (MGI:5806011|PMID:27528195) MGI PMID:27528195 MGI:5806011 NCBI chrNW_004955561:1,260,237...1,275,953
Ensembl chrNW_004955561:1,259,700...1,276,015
JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO (MGI:3609631|PMID:12404118) MGI PMID:12404118 MGI:3609631 NCBI chrNW_004955403:322,082...348,591
Ensembl chrNW_004955403:322,555...347,053
JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:2179743|PMID:11694877) MGI PMID:11694877 MGI:2179743 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677
JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (MGI:2154585|PMID:11716496) MGI PMID:11716496 MGI:2154585 NCBI chrNW_004955442:3,026,458...3,033,582
Ensembl chrNW_004955442:3,025,484...3,033,582
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (MGI:2679893|PMID:14603322) MGI PMID:14603322 MGI:2679893 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026
JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098) MGI PMID:15930098 MGI:3579954 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204
JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO (MGI:3583505|PMID:15939867) MGI PMID:15939867 MGI:3583505 NCBI chrNW_004955425:11,949,849...12,000,610
Ensembl chrNW_004955425:11,945,858...11,985,023
JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (MGI:3607973|PMID:16260493) MGI PMID:16260493 MGI:3607973 NCBI chrNW_004955411:17,177,335...17,229,957
Ensembl chrNW_004955411:17,177,335...17,229,957
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chrNW_004955402:10,392,308...10,502,576
Ensembl chrNW_004955402:10,392,308...10,502,576
JBrowse link
G Nup50 nucleoporin 50 acts_upstream_of_or_within ISO (MGI:1860670|PMID:10891500) MGI PMID:10891500 MGI:1860670 NCBI chrNW_004955413:29,595,498...29,615,167 JBrowse link
G Ptch1 patched 1 involved_in ISO (MGI:3687672|PMID:10500113) Roslin_Institute PMID:10500113 MGI:3687672 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622
JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:8124714 RGD:69996 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:5285157|PMID:20596238) UniProt PMID:20596238 MGI:5285157 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521
JBrowse link
G Sox4 SRY-box transcription factor 4 involved_in ISO (MGI:5285157|PMID:20596238) UniProt PMID:20596238 MGI:5285157 NCBI chrNW_004955483:5,076,664...5,077,059 JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within ISO (MGI:4412133|PMID:19786569) MGI PMID:19786569 MGI:4412133 NCBI chrNW_004955417:14,098,851...14,381,553
Ensembl chrNW_004955417:14,095,694...14,381,607
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO (MGI:4412133|PMID:19786569) MGI PMID:19786569 MGI:4412133 NCBI chrNW_004955445:12,308,285...12,399,012
Ensembl chrNW_004955445:12,308,285...12,399,012
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (MGI:3610767|PMID:16357211) MGI PMID:16357211 MGI:3610767 NCBI chrNW_004955482:7,504,554...7,533,605
Ensembl chrNW_004955482:7,504,532...7,528,542
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (MGI:2136130|PMID:11406614) MGI PMID:11406614 MGI:2136130 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400
JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (MGI:4830023|PMID:20704721) MGI PMID:20704721 MGI:4830023 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (MGI:3624185|PMID:16571627) MGI PMID:16571627 MGI:3624185 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (MGI:3624185|PMID:16571627) MGI PMID:16571627 MGI:3624185 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (MGI:3821448|PMID:19008950) MGI PMID:19008950 MGI:3821448 NCBI chrNW_004955420:23,291,650...23,301,695
Ensembl chrNW_004955420:23,293,222...23,301,694
JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO (MGI:4837757|PMID:20940229) MGI PMID:20940229 MGI:4837757 NCBI chrNW_004955451:17,501,410...17,503,726 JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (MGI:4819429|PMID:20643356) MGI PMID:20643356 MGI:4819429 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) acts_upstream_of_or_within ISO (MGI:4830023|PMID:20704721) MGI PMID:20704721 MGI:4830023 NCBI chrNW_004955437:9,037,933...9,094,237
Ensembl chrNW_004955437:9,037,661...9,094,287
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Sfrp5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:4837757|PMID:20940229)
(MGI:4830023|PMID:20704721)
(MGI:3624185|PMID:16571627)
(MGI:3821448|PMID:19008950)
(MGI:3793375|PMID:18257070)
(MGI:4819429|PMID:20643356)
MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:4830282|PMID:19056682) MGI PMID:19056682 MGI:4830282 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3822373|PMID:19112489) UniProt PMID:19112489 MGI:3822373 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:8657307) UniProt PMID:8657307 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) UniProt PMID:17300925 MGI:5009396 NCBI chrNW_004955466:8,902,728...8,915,685
Ensembl chrNW_004955466:8,902,517...8,915,723
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (MGI:4438817|PMID:19966784) MGI PMID:19966784 MGI:4438817 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862
JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324
JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (MGI:1353705|PMID:10693795) MGI PMID:10693795 MGI:1353705 NCBI chrNW_004955469:3,134,355...3,149,177 JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748
JBrowse link
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004955504:2,072,540...2,099,781 JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004955504:1,456,433...1,460,996
Ensembl chrNW_004955504:1,455,664...1,460,996
JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004955433:11,944,890...11,948,372
Ensembl chrNW_004955433:11,944,890...11,948,369
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390
JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3611949|PMID:16319112) UniProt PMID:16319112 MGI:3611949 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (MGI:81287|PMID:8657307) UniProt PMID:8657307 MGI:81287 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271
JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within ISO (MGI:1270048|PMID:9637690) MGI PMID:9637690 MGI:1270048 NCBI chrNW_004955423:7,090,246...7,253,608 JBrowse link
G Nog noggin involved_in ISO (MGI:3714585|PMID:17522159) UniProt PMID:17522159 MGI:3714585 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12199
    developmental process 5778
      anatomical structure formation involved in morphogenesis 1127
        tube formation 178
          epithelial tube formation 164
            embryonic epithelial tube formation 152
              embryonic heart tube formation + 1
              nephron tubule formation + 20
              neural tube formation + 130
              primary neural tube formation + 115
              secondary neural tube formation 0
Path 2
Term Annotations click to browse term
  biological_process 12199
    developmental process 5778
      anatomical structure development 5431
        tissue development 1896
          tissue morphogenesis 663
            morphogenesis of an epithelium 561
              epithelial tube morphogenesis 380
                epithelial tube formation 164
                  embryonic epithelial tube formation 152
                    embryonic heart tube formation + 1
                    nephron tubule formation + 20
                    neural tube formation + 130
                    primary neural tube formation + 115
                    secondary neural tube formation 0
paths to the root