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ONTOLOGY REPORT - ANNOTATIONS


Term:epithelial to mesenchymal transition
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Accession:GO:0001837 term browser browse the term
Definition:A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.
Synonyms:exact_synonym: EMT;   epithelial-mesenchymal transition;   mesenchymal cell differentiation from epithelial cell



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epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKNA AT-hook transcription factor involved_in IEA
IBA
ISS
Ensembl
TreeGrafter
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:114,330,504...114,398,472
Ensembl chr 9:114,334,156...114,394,405
JBrowse link
G AMELX amelogenin X-linked involved_in ISS (PMID:1734713) BHF-UCL PMID:1734713 NCBI chr  X:11,293,413...11,309,588
Ensembl chr  X:11,293,413...11,300,761
JBrowse link
G BMP2 bone morphogenetic protein 2 acts_upstream_of_or_within
involved_in
IDA
ISS
IEA
(PMID:15110716)
(PMID:18184661)
MGI
BHF-UCL
Ensembl
PMID:15110716 PMID:18184661 GO_REF:0000024 GO_REF:0000107 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in TAS (PMID:14679171) HGNC-UCL PMID:14679171 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G CTNNB1 catenin beta 1 involved_in TAS (PMID:14679171) HGNC-UCL PMID:14679171 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G CUL7 cullin 7 involved_in IDA (PMID:20139075) UniProt PMID:20139075 NCBI chr 6:43,037,617...43,053,851
Ensembl chr 6:43,037,617...43,053,943
JBrowse link
G DACT3 dishevelled binding antagonist of beta catenin 3 involved_in
acts_upstream_of
IEA
ISO
(PMID:23580654) Ensembl
MGI
PMID:23580654 GO_REF:0000107 NCBI chr19:46,647,551...46,661,182
Ensembl chr19:46,647,551...46,661,182
JBrowse link
G DDX17 DEAD-box helicase 17 involved_in IMP (PMID:24910439) UniProt PMID:24910439 NCBI chr22:38,483,438...38,506,311
Ensembl chr22:38,483,438...38,507,660
JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IMP (PMID:24910439) UniProt PMID:24910439 NCBI chr17:64,498,254...64,506,866
Ensembl chr17:64,498,254...64,508,199
JBrowse link
G DLG5 discs large MAGUK scaffold protein 5 involved_in IMP (PMID:28169360) UniProt PMID:28169360 NCBI chr10:77,790,791...77,940,736
Ensembl chr10:77,790,791...77,926,755
JBrowse link
G ENG endoglin involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 9:127,815,016...127,854,658
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:120,013,077...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FAM83D family with sequence similarity 83 member D involved_in IDA (PMID:24344117) UniProt PMID:24344117 NCBI chr20:38,926,417...38,953,106
Ensembl chr20:38,926,312...38,953,106
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in IMP (PMID:26451614) BHF-UCL PMID:26451614 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in ISO
IEA
RGD
Ensembl
PMID:7803853 GO_REF:0000107 RGD:632663 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G FLNA filamin A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21709252) Ensembl
MGI
PMID:21709252 GO_REF:0000107 NCBI chr  X:154,348,531...154,374,634
Ensembl chr  X:154,348,524...154,374,634
JBrowse link
G FOXF2 forkhead box F2 involved_in NAS (PMID:19220249) UniProt PMID:19220249 NCBI chr 6:1,389,576...1,395,603
Ensembl chr 6:1,389,576...1,395,603
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in IMP (PMID:15448698) UniProt PMID:15448698 NCBI chr 3:119,821,321...120,094,447
Ensembl chr 3:119,821,321...120,094,994
JBrowse link
G HGF hepatocyte growth factor involved_in TAS (PMID:14679171) HGNC-UCL PMID:14679171 NCBI chr 7:81,699,010...81,770,047
Ensembl chr 7:81,699,010...81,770,438
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA
ISS
(PMID:18037992) Ensembl
BHF-UCL
PMID:18037992 GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IMP (PMID:18832382) UniProt PMID:18832382 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B involved_in ISS HGNC-UCL GO_REF:0000024 NCBI chr 5:178,204,533...178,211,163
Ensembl chr 5:178,204,533...178,211,163
JBrowse link
G IGF1 insulin like growth factor 1 involved_in NAS (PMID:26944318) BHF-UCL PMID:26944318 NCBI chr12:102,395,874...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LIMS1 LIM zinc finger domain containing 1 NOT|involved_in IMP (PMID:20926685) UniProt PMID:20926685 NCBI chr 2:108,533,671...108,687,246
Ensembl chr 2:108,533,671...108,687,246
JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IDA (PMID:16096638) UniProt PMID:16096638 NCBI chr 8:23,296,897...23,404,120
Ensembl chr 8:23,296,897...23,425,328
JBrowse link
G LOXL3 lysyl oxidase like 3 involved_in IDA (PMID:16096638) UniProt PMID:16096638 NCBI chr 2:74,532,258...74,555,702
Ensembl chr 2:74,532,258...74,555,690
JBrowse link
G MEG8 maternally expressed 8, small nucleolar RNA host gene acts_upstream_of_or_within ISO (PMID:29636669), (PMID:31711641) MGI PMID:29636669 PMID:31711641 NCBI chr14:100,889,649...100,999,113
Ensembl chr14:100,894,770...101,038,859
JBrowse link
G MIR326 microRNA 326 involved_in IMP (PMID:24279830) BHF-UCL PMID:24279830 NCBI chr11:75,335,092...75,335,186
Ensembl chr11:75,335,092...75,335,186
JBrowse link
G MSX1 msh homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:4,859,665...4,863,936
Ensembl chr 4:4,859,665...4,863,936
JBrowse link
G NCAM1 neural cell adhesion molecule 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:112,961,420...113,278,436
Ensembl chr11:112,961,275...113,278,436
JBrowse link
G NFATC1 nuclear factor of activated T cells 1 acts_upstream_of_or_within ISO (PMID:15339668) MGI PMID:15339668 NCBI chr18:79,395,930...79,529,323
Ensembl chr18:79,395,856...79,529,325
JBrowse link
G NOG noggin involved_in IEA
ISS
(PMID:10780858) Ensembl
UniProt
PMID:10780858 GO_REF:0000024 GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IMP
(PMID:14701881)
(PMID:17984306)
Ensembl
MGI
BHF-UCL
PMID:14701881 PMID:17984306 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G NOTCH4 notch receptor 4 involved_in IMP (PMID:17984306) ARUK-UCL PMID:17984306 NCBI chr 6:32,194,843...32,224,067
Ensembl chr 6:32,194,843...32,224,067
JBrowse link
G PPP3R1 protein phosphatase 3 regulatory subunit B, alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15339668) Ensembl
MGI
PMID:15339668 GO_REF:0000107 NCBI chr 2:68,178,857...68,252,532
Ensembl chr 2:68,178,857...68,256,237
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
(PMID:14701881) BHF-UCL
MGI
Ensembl
PMID:14701881 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:26,105,449...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G RFLNB refilin B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21709252) Ensembl
MGI
PMID:21709252 GO_REF:0000107 NCBI chr17:439,978...445,940
Ensembl chr17:439,978...445,939
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr18:20,946,906...21,111,813
Ensembl chr18:20,944,612...21,111,813
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:11,179,759...11,345,437
Ensembl chr 2:11,179,759...11,348,330
JBrowse link
G S100A4 S100 calcium binding protein A4 involved_in TAS (PMID:14679171) HGNC-UCL PMID:14679171 NCBI chr 1:153,543,621...153,545,806
Ensembl chr 1:153,543,613...153,550,136
JBrowse link
G SDHAF2 succinate dehydrogenase complex assembly factor 2 acts_upstream_of ISO (PMID:23983127) MGI PMID:23983127 NCBI chr11:61,430,124...61,446,733
Ensembl chr11:61,430,042...61,446,733
JBrowse link
G SLC39A10 solute carrier family 39 member 10 involved_in IMP
ISS
IEA
(PMID:27274087) UniProt
Ensembl
PMID:27274087 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:195,613,029...195,737,700
Ensembl chr 2:195,575,977...195,737,702
JBrowse link
G SLC39A6 solute carrier family 39 member 6 involved_in IEA
ISS
IDA
(PMID:23919497) Ensembl
UniProt
PMID:23919497 GO_REF:0000024 GO_REF:0000107 NCBI chr18:36,108,531...36,129,340
Ensembl chr18:36,108,531...36,129,385
JBrowse link
G SMAD4 SMAD family member 4 involved_in IMP
IGI
(PMID:30741461)
(PMID:23221074)
BHF-UCL PMID:23221074 PMID:30741461 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,528...51,085,045
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IDA
ISS
IEA
(PMID:16096638) UniProt
Ensembl
PMID:16096638 GO_REF:0000024 GO_REF:0000107 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IMP
(PMID:17916597)
(PMID:17984306), (PMID:9182671)
Ensembl
MGI
BHF-UCL
PMID:9182671 PMID:17916597 PMID:17984306 GO_REF:0000107 NCBI chr 8:48,917,598...48,921,429
Ensembl chr 8:48,917,598...48,921,740
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
(PMID:15096597) Ensembl
MGI
UniProt
PMID:15096597 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G SP6 Sp6 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:47,844,908...47,876,311
Ensembl chr17:47,844,908...47,855,874
JBrowse link
G TGFB1 transforming growth factor beta 1 acts_upstream_of
acts_upstream_of_or_within
involved_in
ISO
IDA
IEA
TAS
(PMID:28373289)
(PMID:29529050)
(PMID:25893292)
(PMID:26451614)
RGD
BHF-UCL
MGI
Ensembl
UniProt
PMID:10504497 PMID:25893292 PMID:26451614 PMID:28373289 PMID:29529050 GO_REF:0000107 RGD:1578678 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IDA
TAS
(PMID:10092230), (PMID:18223299)
(PMID:14679171)
BHF-UCL
HGNC-UCL
PMID:10092230 PMID:14679171 PMID:18223299 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in IDA (PMID:15761148) UniProt PMID:15761148 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IMP (PMID:28131417) BHF-UCL PMID:28131417 NCBI chr 3:30,606,356...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in IDA
IEA
IBA
(PMID:18184661) BHF-UCL
TreeGrafter
GO_Central
PMID:18184661 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G TGFBR3L transforming growth factor beta receptor 3 like involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:7,914,830...7,919,097
Ensembl chr19:7,914,830...7,919,097
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA
ISS
Ensembl
HGNC-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr19:58,544,064...58,550,715
Ensembl chr19:58,544,064...58,550,722
JBrowse link
G TRIP10 thyroid hormone receptor interactor 10 ISO RGD PMID:23819628 RGD:11535143 NCBI chr19:6,739,680...6,751,530
Ensembl chr19:6,737,925...6,751,530
JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25813538) Ensembl
MGI
PMID:25813538 GO_REF:0000107 NCBI chr11:76,186,325...76,210,761
Ensembl chr11:76,186,325...76,210,736
JBrowse link
G WNT4 Wnt family member 4 involved_in IEP (PMID:12841867) UniProt PMID:12841867 NCBI chr 1:22,117,313...22,143,097
Ensembl chr 1:22,117,313...22,143,969
JBrowse link
G WNT5A Wnt family member 5A involved_in IEP (PMID:12841867) UniProt PMID:12841867 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM15 ADAM metallopeptidase domain 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19156209) Ensembl
MGI
PMID:19156209 GO_REF:0000107 NCBI chr 1:155,051,316...155,062,775
Ensembl chr 1:155,050,566...155,062,775
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IDA (PMID:18184661) BHF-UCL PMID:18184661 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:125,749,632...125,761,269
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G OLFM1 olfactomedin 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:135,075,505...135,121,184
Ensembl chr 9:135,075,422...135,121,180
JBrowse link
G RTN4 reticulon 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19156209) Ensembl
MGI
PMID:19156209 GO_REF:0000107 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IMP (PMID:22130515) BHF-UCL PMID:22130515 NCBI chr12:114,670,255...114,684,175
Ensembl chr12:114,670,255...114,684,175
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IDA (PMID:10092230) BHF-UCL PMID:10092230 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in IDA (PMID:18184661) BHF-UCL PMID:18184661 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G WNT16 Wnt family member 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19156209) Ensembl
MGI
PMID:19156209 GO_REF:0000107 NCBI chr 7:121,325,367...121,341,104
Ensembl chr 7:121,325,367...121,341,104
JBrowse link
G WNT2 Wnt family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20159597) Ensembl
MGI
PMID:20159597 GO_REF:0000107 NCBI chr 7:117,275,451...117,323,058
Ensembl chr 7:117,275,451...117,323,152
JBrowse link
endocardial cushion to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVRL1 activin A receptor like type 1 NOT|involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr12:51,906,944...51,923,361
Ensembl chr12:51,906,908...51,923,361
JBrowse link
G ENG endoglin NOT|involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 9:127,815,016...127,854,658
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:121,612,116...121,641,440
Ensembl chr 8:121,612,116...121,641,440
JBrowse link
endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EFNA1 ephrin A1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:155,127,876...155,134,899
Ensembl chr 1:155,127,876...155,134,899
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:15680351) MGI PMID:15680351 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15680351) Ensembl
MGI
PMID:15680351 GO_REF:0000107 NCBI chr 6:125,749,632...125,761,269
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
epithelial to mesenchymal transition involved in cardiac fibroblast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR21 microRNA 21 involved_in IDA (PMID:23441172) BHF-UCL PMID:23441172 NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
JBrowse link
G PDCD4 programmed cell death 4 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:110,871,928...110,900,006
Ensembl chr10:110,871,795...110,900,006
JBrowse link
G SPRY1 sprouty RTK signaling antagonist 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:123,396,795...123,403,760
Ensembl chr 4:123,396,795...123,403,760
JBrowse link
epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 NOT|involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G ENG endoglin involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:127,815,016...127,854,658
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
(PMID:21364285) BHF-UCL
MGI
Ensembl
PMID:21364285 GO_REF:0000024 GO_REF:0000107 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,109...101,780,371
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:17303760) MGI PMID:17303760 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in TAS (PMID:20951801) BHF-UCL PMID:20951801 NCBI chr 6:125,749,632...125,761,269
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
TAS
(PMID:17303760)
(PMID:20951801)
Ensembl
MGI
UniProt
BHF-UCL
PMID:17303760 PMID:20951801 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18667074) Ensembl
MGI
PMID:18667074 GO_REF:0000107 NCBI chr 4:4,859,665...4,863,936
Ensembl chr 4:4,859,665...4,863,936
JBrowse link
G MSX2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18667074) Ensembl
MGI
PMID:18667074 GO_REF:0000107 NCBI chr 5:174,724,582...174,730,896
Ensembl chr 5:174,724,582...174,730,896
JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:26,105,449...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,528...51,085,045
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA
TAS
ISS
(PMID:20951801) Ensembl
BHF-UCL
PMID:20951801 GO_REF:0000024 GO_REF:0000107 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
TAS
ISS
(PMID:18663143)
(PMID:20951801)
Ensembl
MGI
BHF-UCL
PMID:18663143 PMID:20951801 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:48,917,598...48,921,429
Ensembl chr 8:48,917,598...48,921,740
JBrowse link
G TMEM100 transmembrane protein 100 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25318679) Ensembl
MGI
PMID:25318679 GO_REF:0000107 NCBI chr17:55,719,627...55,732,081
Ensembl chr17:55,719,627...55,732,121
JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G TASOR transcription activation suppressor involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,132...56,683,265
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25813538) Ensembl
MGI
PMID:25813538 GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
negative regulation of cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR19A microRNA 19a acts_upstream_of IDA (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr13:91,350,891...91,350,972
Ensembl chr13:91,350,891...91,350,972
JBrowse link
G MIR19B1 microRNA 19b-1 acts_upstream_of IDA (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr13:91,351,192...91,351,278
Ensembl chr13:91,351,192...91,351,278
JBrowse link
G MIR19B2 microRNA 19b-2 acts_upstream_of IDA (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr  X:134,169,671...134,169,766
Ensembl chr  X:134,169,671...134,169,766
JBrowse link
G NOG noggin involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
negative regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADIPOR1 adiponectin receptor 1 involved_in IMP (PMID:23776679) BHF-UCL PMID:23776679 NCBI chr 1:202,940,825...202,958,572
Ensembl chr 1:202,940,826...202,958,572
JBrowse link
G BMP5 bone morphogenetic protein 5 involved_in NAS (PMID:21319131) BHF-UCL PMID:21319131 NCBI chr 6:55,753,653...55,875,590
Ensembl chr 6:55,753,653...55,875,590
JBrowse link
G DAB2IP DAB2 interacting protein involved_in IDA
IMP
(PMID:20154697)
(PMID:20080667)
UniProt
BHF-UCL
PMID:20080667 PMID:20154697 NCBI chr 9:121,567,074...121,785,530
Ensembl chr 9:121,567,057...121,785,530
JBrowse link
G DACT3 dishevelled binding antagonist of beta catenin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23580654) Ensembl
MGI
PMID:23580654 GO_REF:0000107 NCBI chr19:46,647,551...46,661,182
Ensembl chr19:46,647,551...46,661,182
JBrowse link
G EFNA1 ephrin A1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:155,127,876...155,134,899
Ensembl chr 1:155,127,876...155,134,899
JBrowse link
G EPHA4 EPH receptor A4 involved_in IMP (PMID:29093007) ARUK-UCL PMID:29093007 NCBI chr 2:221,418,027...221,574,202
Ensembl chr 2:221,418,027...221,574,202
JBrowse link
G FOXA1 forkhead box A1 involved_in IMP (PMID:20160041) BHF-UCL PMID:20160041 NCBI chr14:37,589,552...37,595,249
Ensembl chr14:37,589,552...37,596,059
JBrowse link
G FOXA2 forkhead box A2 involved_in IMP (PMID:20160041) BHF-UCL PMID:20160041 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,580,998...22,585,455
JBrowse link
G GATA3 GATA binding protein 3 acts_upstream_of IMP (PMID:26451614) BHF-UCL PMID:26451614 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198
JBrowse link
G HPN hepsin involved_in IDA
IBA
(PMID:19843851) UniProt
GO_Central
PMID:19843851 GO_REF:0000033 NCBI chr19:35,040,506...35,066,573
Ensembl chr19:35,040,506...35,066,573
JBrowse link
G IL17RD interleukin 17 receptor D involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:57,089,982...57,170,317
Ensembl chr 3:57,089,982...57,170,306
JBrowse link
G KAT8 lysine acetyltransferase 8 involved_in IDA (PMID:27292636) UniProt PMID:27292636 NCBI chr16:31,117,664...31,131,393
Ensembl chr16:31,114,489...31,131,393
JBrowse link
G LDLRAD4 low density lipoprotein receptor class A domain containing 4 involved_in IMP (PMID:24627487) UniProt PMID:24627487 NCBI chr18:13,217,682...13,652,754
Ensembl chr18:13,217,498...13,652,755
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IMP (PMID:19443654) BHF-UCL PMID:19443654 NCBI chr 1:11,674,480...11,691,830
Ensembl chr 1:11,658,918...11,691,811
JBrowse link
G MARK1 microtubule affinity regulating kinase 1 involved_in IDA (PMID:31281935) ARUK-UCL PMID:31281935 NCBI chr 1:220,528,136...220,664,461
Ensembl chr 1:220,528,136...220,664,461
JBrowse link
G MIR130A microRNA 130a acts_upstream_of IGI (PMID:30741461) BHF-UCL PMID:30741461 NCBI chr11:57,641,198...57,641,286
Ensembl chr11:57,641,198...57,641,286
JBrowse link
G MIR142 microRNA 142 involved_in IGI (PMID:26572508) BHF-UCL PMID:26572508 NCBI chr17:58,331,232...58,331,318
Ensembl chr17:58,331,232...58,331,318
JBrowse link
G MIR144 microRNA 144 acts_upstream_of IDA (PMID:27785072) DIBU PMID:27785072 NCBI chr17:28,861,533...28,861,618
Ensembl chr17:28,861,533...28,861,618
JBrowse link
G MIR145 microRNA 145 acts_upstream_of IDA (PMID:24384875) BHF-UCL PMID:24384875 NCBI chr 5:149,430,646...149,430,733
Ensembl chr 5:149,430,646...149,430,733
JBrowse link
G MIR149 microRNA 149 involved_in IDA (PMID:25916550) ARUK-UCL PMID:25916550 NCBI chr 2:240,456,001...240,456,089
Ensembl chr 2:240,456,001...240,456,089
JBrowse link
G MIR18A microRNA 18a involved_in IMP (PMID:28131417) BHF-UCL PMID:28131417 NCBI chr13:91,350,751...91,350,821
Ensembl chr13:91,350,751...91,350,821
JBrowse link
G MIR202 microRNA 202 acts_upstream_of IGI (PMID:28373289) BHF-UCL PMID:28373289 NCBI chr10:133,247,511...133,247,620
Ensembl chr10:133,247,511...133,247,620
JBrowse link
G MIR204 microRNA 204 involved_in IGI (PMID:23221074) BHF-UCL PMID:23221074 NCBI chr 9:70,809,975...70,810,084
Ensembl chr 9:70,809,975...70,810,084
JBrowse link
G MIR29B1 microRNA 29b-1 involved_in IDA (PMID:25032858) BHF-UCL PMID:25032858 NCBI chr 7:130,877,459...130,877,539
Ensembl chr 7:130,877,459...130,877,539
JBrowse link
G MIR29B2 microRNA 29b-2 involved_in IDA (PMID:25032858) BHF-UCL PMID:25032858 NCBI chr 1:207,802,443...207,802,523
Ensembl chr 1:207,802,443...207,802,523
JBrowse link
G MIR302B microRNA 302b involved_in IGI (PMID:21490602) BHF-UCL PMID:21490602 NCBI chr 4:112,648,485...112,648,557
Ensembl chr 4:112,648,485...112,648,557
JBrowse link
G MIR31 microRNA 31 ISO RGD PMID:23270756 RGD:13210526 NCBI chr 9:21,512,115...21,512,185
Ensembl chr 9:21,512,115...21,512,185
JBrowse link
G MIR372 microRNA 372 involved_in IGI (PMID:21490602) BHF-UCL PMID:21490602 NCBI chr19:53,787,890...53,787,956
Ensembl chr19:53,787,890...53,787,956
JBrowse link
G MIR379 microRNA 379 involved_in IDA (PMID:26944318) BHF-UCL PMID:26944318 NCBI chr14:101,022,066...101,022,132
Ensembl chr14:101,022,066...101,022,132
JBrowse link
G MIR573 microRNA 573 acts_upstream_of IDA (PMID:26451614) BHF-UCL PMID:26451614 NCBI chr 4:24,520,192...24,520,290
Ensembl chr 4:24,520,192...24,520,290
JBrowse link
G MIR590 microRNA 590 involved_in IDA (PMID:26459119) BHF-UCL PMID:26459119 NCBI chr 7:74,191,198...74,191,294
Ensembl chr 7:74,191,198...74,191,294
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in IDA (PMID:19293183) UniProt PMID:19293183 NCBI chr14:36,516,397...36,520,232
Ensembl chr14:36,516,392...36,521,149
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in IEA
TAS
ISS
(PMID:28455959) Ensembl
ARUK-UCL
UniProt
PMID:28455959 GO_REF:0000024 GO_REF:0000107 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188
JBrowse link
G PPP2CA protein phosphatase 2 catalytic subunit alpha involved_in IMP (PMID:20080667) BHF-UCL PMID:20080667 NCBI chr 5:134,194,332...134,226,073
Ensembl chr 5:134,194,035...134,226,073
JBrowse link
G PTEN phosphatase and tensin homolog involved_in IMP (PMID:27919618) BHF-UCL PMID:27919618 NCBI chr10:87,863,625...87,971,930
Ensembl chr10:87,862,638...87,971,930
JBrowse link
G SDHAF2 succinate dehydrogenase complex assembly factor 2 acts_upstream_of_or_within IMP (PMID:23983127) MGI PMID:23983127 NCBI chr11:61,430,124...61,446,733
Ensembl chr11:61,430,042...61,446,733
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IDA (PMID:19095296) UniProt PMID:19095296 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in IDA (PMID:19095296) UniProt PMID:19095296 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SMAD7 SMAD family member 7 involved_in TAS (PMID:19018011) BHF-UCL PMID:19018011 NCBI chr18:48,919,853...48,950,965
Ensembl chr18:48,919,853...48,950,965
JBrowse link
G SPRED1 sprouty related EVH1 domain containing 1 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr15:38,252,836...38,357,249
Ensembl chr15:38,252,836...38,357,249
JBrowse link
G SPRED2 sprouty related EVH1 domain containing 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:65,307,175...65,432,599
Ensembl chr 2:65,310,851...65,432,637
JBrowse link
G SPRED3 sprouty related EVH1 domain containing 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:38,388,697...38,399,587
Ensembl chr19:38,388,421...38,399,587
JBrowse link
G SPRY1 sprouty RTK signaling antagonist 1 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:123,396,795...123,403,760
Ensembl chr 4:123,396,795...123,403,760
JBrowse link
G SPRY2 sprouty RTK signaling antagonist 2 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr13:80,335,976...80,341,126
Ensembl chr13:80,335,976...80,341,126
JBrowse link
G TBX5 T-box transcription factor 5 involved_in TAS (PMID:20299672) DFLAT PMID:20299672 NCBI chr12:114,353,911...114,408,442
Ensembl chr12:114,353,911...114,408,442
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:17823118) MGI PMID:17823118 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G TRIM62 tripartite motif containing 62 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24890125) Ensembl
MGI
PMID:24890125 GO_REF:0000107 NCBI chr 1:33,145,399...33,182,043
Ensembl chr 1:33,145,399...33,182,059
JBrowse link
G TSC2 TSC complex subunit 2 ISO RGD PMID:20813961 RGD:11568680 NCBI chr16:2,047,985...2,089,491
Ensembl chr16:2,047,967...2,089,491
JBrowse link
G USF3 upstream transcription factor family member 3 involved_in IMP
IBA
(PMID:28011713) UniProt
GO_Central
PMID:28011713 GO_REF:0000033 NCBI chr 3:113,648,385...113,696,642
Ensembl chr 3:113,648,385...113,696,646
JBrowse link
G VASN vasorin involved_in IMP (PMID:21170088) UniProt PMID:21170088 NCBI chr16:4,371,848...4,383,538
Ensembl chr16:4,371,848...4,383,538
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,770,211...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G ZNF750 zinc finger protein 750 involved_in IMP (PMID:32042337) ARUK-UCL PMID:32042337 NCBI chr17:82,829,434...82,840,022
Ensembl chr17:82,829,434...82,840,022
JBrowse link
negative regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TGFB2 transforming growth factor beta 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
negative regulation of neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISS UniProt GO_REF:0000024 NCBI chr19:49,806,866...49,813,553
Ensembl chr19:49,806,866...49,817,376
JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDN1 endothelin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:12,230,516...12,297,194
Ensembl chr 6:12,290,361...12,297,194
JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20130188) Ensembl
MGI
PMID:20130188 GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G WNT8A Wnt family member 8A involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 5:138,077,367...138,092,365
Ensembl chr 5:138,083,990...138,092,365
JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GSC goosecoid homeobox involved_in IMP (PMID:24290375) UniProt PMID:24290375 NCBI chr14:94,768,223...94,770,113
Ensembl chr14:94,768,223...94,770,113
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:17685487) MGI PMID:17685487 NCBI chr 3:184,380,054...184,390,739
Ensembl chr 3:184,380,054...184,390,736
JBrowse link
G KBTBD8 kelch repeat and BTB domain containing 8 involved_in IMP (PMID:26399832) UniProt PMID:26399832 NCBI chr 3:66,998,307...67,011,210
Ensembl chr 3:66,998,307...67,011,210
JBrowse link
G KLHL12 kelch like family member 12 involved_in IMP (PMID:27716508) UniProt PMID:27716508 NCBI chr 1:202,891,120...202,928,599
Ensembl chr 1:202,891,116...202,928,636
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in IDA (PMID:11029007) BHF-UCL PMID:11029007 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G NOLC1 nucleolar and coiled-body phosphoprotein 1 involved_in IMP (PMID:26399832) UniProt PMID:26399832 NCBI chr10:102,152,389...102,163,870
Ensembl chr10:102,152,176...102,163,871
JBrowse link
G PDCD6 programmed cell death 6 involved_in IMP (PMID:27716508) UniProt PMID:27716508 NCBI chr 5:271,646...314,974
Ensembl chr 5:271,621...314,974
JBrowse link
G PEF1 penta-EF-hand domain containing 1 involved_in IMP (PMID:27716508) UniProt PMID:27716508 NCBI chr 1:31,629,866...31,644,876
Ensembl chr 1:31,629,866...31,644,896
JBrowse link
G POLR1B RNA polymerase I subunit B involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:112,542,036...112,579,818
Ensembl chr 2:112,541,915...112,579,818
JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 involved_in IMP (PMID:26399832) UniProt PMID:26399832 NCBI chr 5:150,357,697...150,400,293
Ensembl chr 5:150,357,629...150,400,308
JBrowse link
positive regulation of cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:157,736,446...157,876,330
Ensembl chr 2:157,736,251...157,876,330
JBrowse link
G EMP2 epithelial membrane protein 2 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr16:10,528,422...10,580,598
Ensembl chr16:10,528,422...10,580,632
JBrowse link
G JAG1 jagged canonical Notch ligand 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr20:10,637,684...10,673,999
Ensembl chr20:10,637,684...10,673,999
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (MGI:5300829|PMID:22186728) UniProt PMID:22186728 MGI:5300829 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
positive regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM8 ADAM metallopeptidase domain 8 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:133,262,423...133,276,868
Ensembl chr10:133,262,420...133,276,868
JBrowse link
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:21743278 RGD:7243870 NCBI chr 6:32,180,969...32,184,253
Ensembl chr 6:32,180,968...32,184,322
JBrowse link
G AGT angiotensinogen involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:230,702,523...230,745,583
Ensembl chr 1:230,690,776...230,745,576
JBrowse link
G ALX1 ALX homeobox 1 involved_in IMP (PMID:23288509) UniProt PMID:23288509 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784
JBrowse link
G AXIN2 axin 2 involved_in IMP (PMID:17072303) BHF-UCL PMID:17072303 NCBI chr17:65,528,563...65,561,648
Ensembl chr17:65,528,563...65,561,648
JBrowse link
G BAMBI BMP and activin membrane bound inhibitor involved_in IMP (PMID:19328798) BHF-UCL PMID:19328798 NCBI chr10:28,677,521...28,682,932
Ensembl chr10:28,677,510...28,682,932
JBrowse link
G BCL9L BCL9 like involved_in IMP (PMID:19328798) BHF-UCL PMID:19328798 NCBI chr11:118,896,136...118,925,926
Ensembl chr11:118,893,875...118,925,926
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IDA
(PMID:16314491)
(PMID:20890042)
Ensembl
MGI
BHF-UCL
PMID:16314491 PMID:20890042 GO_REF:0000107 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in IDA (PMID:20018240) UniProt PMID:20018240 NCBI chr17:50,184,101...50,201,631
Ensembl chr17:50,184,101...50,201,632
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA
ISS
Ensembl
CAFA
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in
IGI
IMP
(PMID:23983127)
(PMID:17072303)
MGI
BHF-UCL
PMID:17072303 PMID:23983127 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IDA
IBA
(PMID:15734730) UniProt
GO_Central
PMID:15734730 GO_REF:0000033 NCBI chr 5:39,371,677...39,424,980
Ensembl chr 5:39,371,675...39,462,300
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IDA (PMID:20154697) UniProt PMID:20154697 NCBI chr 7:148,807,383...148,884,291
Ensembl chr 7:148,807,257...148,884,321
JBrowse link
G FERMT2 FERM domain containing kindlin 2 involved_in IDA (PMID:24226523) ARUK-UCL PMID:24226523 NCBI chr14:52,857,273...52,951,050
Ensembl chr14:52,857,268...52,952,435
JBrowse link
G FOXC1 forkhead box C1 involved_in IMP (PMID:22991501) UniProt PMID:22991501 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G GCNT2 glucosaminyl (N-acetyl) transferase 2 (I blood group) involved_in IMP (PMID:21750175) UniProt PMID:21750175 NCBI chr 6:10,521,351...10,629,368
Ensembl chr 6:10,492,223...10,629,368
JBrowse link
G GLIPR2 GLI pathogenesis related 2 involved_in IDA (PMID:23516513) UniProt PMID:23516513 NCBI chr 9:36,136,536...36,163,913
Ensembl chr 9:36,136,536...36,163,913
JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO
IEA
RGD
Ensembl
PMID:19553350 GO_REF:0000107 RGD:9590229 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G IL1B interleukin 1 beta involved_in IDA (PMID:25204733) BHF-UCL PMID:25204733 NCBI chr 2:112,829,751...112,836,779
Ensembl chr 2:112,829,751...112,836,816
JBrowse link
G IL6 interleukin 6 involved_in IDA (PMID:25916550) ARUK-UCL PMID:25916550 NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in ISO PMID:23270756 RGD
BHF-UCL
PMID:23270756 RGD:13210526 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730
JBrowse link
G KDM1A lysine demethylase 1A involved_in IDA (PMID:27292636) UniProt PMID:27292636 NCBI chr 1:23,019,468...23,083,689
Ensembl chr 1:23,019,443...23,083,689
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in IMP (PMID:20018240) UniProt PMID:20018240 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IMP (PMID:24239292) UniProt PMID:24239292 NCBI chr 8:23,296,897...23,404,120
Ensembl chr 8:23,296,897...23,425,328
JBrowse link
G LRG1 leucine rich alpha-2-glycoprotein 1 involved_in IDA (PMID:32887674) BHF-UCL PMID:32887674 NCBI chr19:4,536,402...4,540,036
Ensembl chr19:4,536,402...4,540,036
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in ISO
IEA
TGFb1 RGD
Ensembl
PMID:27488450 GO_REF:0000107 RGD:152995505 NCBI chr 1:11,674,480...11,691,830
Ensembl chr 1:11,658,918...11,691,811
JBrowse link
G MDK midkine involved_in IMP (PMID:18469519) UniProt PMID:18469519 NCBI chr11:46,380,784...46,383,837
Ensembl chr11:46,380,756...46,383,837
JBrowse link
G MIR21 microRNA 21 involved_in IDA (PMID:24887517) BHF-UCL PMID:24887517 NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
JBrowse link
G MIR221 microRNA 221 involved_in IGI (PMID:21673316) BHF-UCL PMID:21673316 NCBI chr  X:45,746,157...45,746,266
Ensembl chr  X:45,746,157...45,746,266
JBrowse link
G MIR222 microRNA 222 involved_in IGI (PMID:21673316) BHF-UCL PMID:21673316 NCBI chr  X:45,747,015...45,747,124
Ensembl chr  X:45,747,015...45,747,124
JBrowse link
G MIR519D microRNA 519d acts_upstream_of IDA (PMID:29093007) ARUK-UCL PMID:29093007 NCBI chr19:53,713,347...53,713,434
Ensembl chr19:53,713,347...53,713,434
JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IMP (PMID:27919618) BHF-UCL PMID:27919618 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556
JBrowse link
G MYOCD myocardin involved_in ISO PMID:23270756 BHF-UCL PMID:23270756 RGD:13210526 NCBI chr17:12,665,890...12,768,949
Ensembl chr17:12,665,890...12,768,949
JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G OLFM1 olfactomedin 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:135,075,505...135,121,184
Ensembl chr 9:135,075,422...135,121,180
JBrowse link
G PDPN podoplanin involved_in IMP (PMID:17046996), (PMID:21376833) UniProt PMID:17046996 PMID:21376833 NCBI chr 1:13,583,757...13,617,957
Ensembl chr 1:13,583,465...13,617,957
JBrowse link
G PTK2 protein tyrosine kinase 2 involved_in IGI (PMID:26944318) BHF-UCL PMID:26944318 NCBI chr 8:140,657,900...141,002,079
Ensembl chr 8:140,657,900...141,002,216
JBrowse link
G RGCC regulator of cell cycle involved_in IMP
IDA
(PMID:19158077)
(PMID:21307346)
BHF-UCL PMID:19158077 PMID:21307346 NCBI chr13:41,457,550...41,470,871
Ensembl chr13:41,457,550...41,470,871
JBrowse link
G SDCBP syndecan binding protein involved_in IMP (PMID:25893292) UniProt PMID:25893292 NCBI chr 8:58,553,261...58,582,858
Ensembl chr 8:58,552,924...58,582,859
JBrowse link
G SERPINB3 serpin family B member 3 involved_in IMP (PMID:20527027) UniProt PMID:20527027 NCBI chr18:63,655,197...63,661,893
Ensembl chr18:63,655,197...63,661,893
JBrowse link
G SMAD2 SMAD family member 2 involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr18:47,808,957...47,930,872
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SMAD3 SMAD family member 3 involved_in IMP
IDA
(PMID:18505915)
(PMID:21307346)
BHF-UCL PMID:18505915 PMID:21307346 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173
JBrowse link
G SMAD4 SMAD family member 4 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,528...51,085,045
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in TAS
IEA
IMP
ISS
(PMID:17072303)
(PMID:20018240), (PMID:23288509)
BHF-UCL
Ensembl
UniProt
PMID:17072303 PMID:20018240 PMID:23288509 GO_REF:0000024 GO_REF:0000107 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G TBX20 T-box transcription factor 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:35,202,430...35,254,100
Ensembl chr 7:35,202,430...35,254,100
JBrowse link
G TCF7L2 transcription factor 7 like 2 involved_in IMP (PMID:17072303) BHF-UCL PMID:17072303 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
NAS
ISO
IDA
IMP
IEA
(PMID:21319131)
(PMID:18794329)
(PMID:17999987), (PMID:18505915), (PMID:26572508)
(PMID:21490602)
BHF-UCL
MGI
Ensembl
PMID:17999987 PMID:18505915 PMID:18794329 PMID:21319131 PMID:21490602 More... GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB1I1 transforming growth factor beta 1 induced transcript 1 involved_in IMP (PMID:18762808) BHF-UCL PMID:18762808 NCBI chr16:31,472,152...31,477,960
Ensembl chr16:31,471,585...31,477,960
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IDA (PMID:17999987), (PMID:18505915) BHF-UCL PMID:17999987 PMID:18505915 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFB3 transforming growth factor beta 3 involved_in ISS
IDA
(PMID:18505915), (PMID:18718461) BHF-UCL PMID:18505915 PMID:18718461 GO_REF:0000024 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS
IEA
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IDA (PMID:26459119) BHF-UCL PMID:26459119 NCBI chr 3:30,606,356...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
G TIAM1 TIAM Rac1 associated GEF 1 involved_in NAS (PMID:17086355) BHF-UCL PMID:17086355 NCBI chr21:31,118,418...31,559,087
Ensembl chr21:31,118,416...31,559,977
JBrowse link
G TNXB tenascin XB involved_in ISO ComplexPortal GO_REF:0000114 NCBI chr 6:32,041,153...32,109,338
Ensembl chr 6:32,041,153...32,115,334
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IMP
IEA
(PMID:18297062) BHF-UCL
Ensembl
PMID:18297062 GO_REF:0000107 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
G WWTR1 WW domain containing transcription regulator 1 involved_in IDA (PMID:18227151) UniProt PMID:18227151 NCBI chr 3:149,517,235...149,724,788
Ensembl chr 3:149,517,235...149,736,714
JBrowse link
G ZNF703 zinc finger protein 703 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:37,695,782...37,700,019
Ensembl chr 8:37,695,782...37,700,019
JBrowse link
positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENG endoglin involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:127,815,016...127,854,658
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA
ISS
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:30,606,356...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:68,467,585...68,580,162
Ensembl chr 2:68,467,572...68,655,862
JBrowse link
G CLASP1 cytoplasmic linker associated protein 1 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 2:121,337,776...121,649,462
Ensembl chr 2:121,337,776...121,649,476
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:33,496,245...33,718,254
Ensembl chr 3:33,496,245...33,718,356
JBrowse link
G DAG1 dystroglycan 1 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:49,468,948...49,535,615
Ensembl chr 3:49,468,713...49,535,618
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr15:43,772,620...43,776,966
Ensembl chr15:43,772,605...43,777,315
JBrowse link
G EPHA3 EPH receptor A3 involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:89,107,621...89,482,134
Ensembl chr 3:89,107,621...89,482,134
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IMP (PMID:16816361) UniProt PMID:16816361 NCBI chr15:32,718,004...32,745,106
Ensembl chr15:32,718,004...32,745,106
JBrowse link
G MCRIP1 MAPK regulated corepressor interacting protein 1 involved_in IDA (PMID:25728771) UniProt PMID:25728771 NCBI chr17:81,822,361...81,833,291
Ensembl chr17:81,822,361...81,833,302
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr11:118,606,436...118,658,028
Ensembl chr11:118,606,440...118,658,031
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IMP (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:111,732,496...111,976,517
Ensembl chr 3:111,732,497...111,976,517
JBrowse link
G POFUT2 protein O-fucosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20637190) Ensembl
MGI
PMID:20637190 GO_REF:0000107 NCBI chr21:45,263,935...45,287,895
Ensembl chr21:45,263,928...45,287,898
JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in IDA (PMID:25768908) UniProt PMID:25768908 NCBI chr 6:163,414,718...163,578,592
Ensembl chr 6:163,414,000...163,578,592
JBrowse link
G SMAD7 SMAD family member 7 involved_in IMP (PMID:24887517) BHF-UCL PMID:24887517 NCBI chr18:48,919,853...48,950,965
Ensembl chr18:48,919,853...48,950,965
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TIAM1 TIAM Rac1 associated GEF 1 involved_in IDA (PMID:20826792) BHF-UCL PMID:20826792 NCBI chr21:31,118,418...31,559,087
Ensembl chr21:31,118,416...31,559,977
JBrowse link
regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TGFB1 transforming growth factor beta 1 NOT|involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB3 transforming growth factor beta 3 NOT|involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011
JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A NOT|involved_in ISO (MGI:3040576|PMID:15073157) BHF-UCL PMID:15073157 MGI:3040576 NCBI chr10:86,755,763...86,932,844
Ensembl chr10:86,756,596...86,932,825
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      cellular developmental process 5182
        cell differentiation 5181
          mesenchymal cell differentiation 297
            epithelial to mesenchymal transition 204
              cardiac epithelial to mesenchymal transition + 41
              clearance of cells from fusion plate by epithelial to mesenchymal transition 0
              epicardial cell to mesenchymal cell transition 0
              mesodermal to mesenchymal transition involved in gastrulation + 3
              negative regulation of epithelial to mesenchymal transition + 58
              neural crest formation + 17
              positive regulation of epithelial to mesenchymal transition + 63
              regulation of epithelial to mesenchymal transition + 132
Path 2
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      anatomical structure development 7020
        tissue development 2489
          mesenchyme development 415
            mesenchymal cell differentiation 297
              epithelial to mesenchymal transition 204
                cardiac epithelial to mesenchymal transition + 41
                clearance of cells from fusion plate by epithelial to mesenchymal transition 0
                epicardial cell to mesenchymal cell transition 0
                mesodermal to mesenchymal transition involved in gastrulation + 3
                negative regulation of epithelial to mesenchymal transition + 58
                neural crest formation + 17
                positive regulation of epithelial to mesenchymal transition + 63
                regulation of epithelial to mesenchymal transition + 132
paths to the root