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ONTOLOGY REPORT - ANNOTATIONS

Term:trophectodermal cell differentiation
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Accession:GO:0001829 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a trophectoderm cell.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19'.
Synonyms:exact_synonym: trophectoderm cell differentiation


show annotations for term's descendants           Sort by:
trophectodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:9272950) MGI PMID:9272950 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Bysl bystin-like acts_upstream_of_or_within IMP (PMID:17242206) MGI PMID:17242206 NCBI chr17:47,910,256...47,922,417
Ensembl chr17:47,910,256...47,922,417 		JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within IMP (PMID:17138661) MGI PMID:17138661 NCBI chr 8:107,329,982...107,396,879
Ensembl chr 8:107,329,983...107,396,878 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within IMP
IDA		 (PMID:15788452), (PMID:20404091)
(PMID:16325584)
(PMID:16325584), (PMID:25397698)
(PMID:25397698)		 MGI PMID:15788452 PMID:16325584 PMID:20404091 PMID:25397698 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (PMID:16579983) MGI PMID:16579983 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in IMP (MGI:5487505|PMID:22367759) UniProt PMID:22367759 MGI:5487505 NCBI chr 8:96,445,559...96,534,741
Ensembl chr 8:96,446,079...96,534,092 		JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in IMP (MGI:5487505|PMID:22367759) UniProt PMID:22367759 MGI:5487505 NCBI chr10:116,321,065...116,418,891
Ensembl chr10:116,321,066...116,417,416 		JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 involved_in IMP (MGI:5487505|PMID:22367759) UniProt PMID:22367759 MGI:5487505 NCBI chr 7:3,646,717...3,664,108
Ensembl chr 7:3,648,267...3,664,108 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within IMP (PMID:24036311) MGI PMID:24036311 NCBI chr 7:110,628,158...110,655,584
Ensembl chr 7:110,628,158...110,655,584 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within IGI
IDA		 (PMID:16325584) MGI PMID:16325584 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Foxd3 forkhead box D3 acts_upstream_of_or_within IMP (PMID:16039639) MGI PMID:16039639 NCBI chr 4:99,544,536...99,546,908
Ensembl chr 4:99,544,536...99,546,859 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Hopx HOP homeobox acts_upstream_of_or_within IMP
ISO		 (PMID:17576768) MGI PMID:17576768 GO_REF:0000008 NCBI chr 5:77,234,831...77,262,970
Ensembl chr 5:77,234,835...77,262,968 		JBrowse link
G Junb jun B proto-oncogene acts_upstream_of_or_within IMP
IDA		 (PMID:10022836)
(PMID:11456449)		 MGI PMID:10022836 PMID:11456449 NCBI chr 8:85,703,538...85,705,377
Ensembl chr 8:85,701,113...85,705,347 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IDA (PMID:11456449) MGI PMID:11456449 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of
acts_upstream_of_or_within		 IGI (PMID:16325584) MGI PMID:16325584 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within IMP (PMID:25397698) MGI PMID:25397698 NCBI chr 3:82,743,828...82,783,828
Ensembl chr 3:82,744,535...82,783,790 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of IMP (PMID:17507372) MGI PMID:17507372 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Sp1 trans-acting transcription factor 1 acts_upstream_of_or_within IGI (PMID:17584888) MGI PMID:17584888 NCBI chr15:102,314,751...102,344,839
Ensembl chr15:102,314,578...102,344,839 		JBrowse link
G Sp3 trans-acting transcription factor 3 acts_upstream_of_or_within IGI (PMID:17584888) MGI PMID:17584888 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101 		JBrowse link
G Tfap2c transcription factor AP-2, gamma acts_upstream_of_or_within IMP (PMID:20404091) MGI PMID:20404091 NCBI chr 2:172,387,599...172,400,542
Ensembl chr 2:172,391,513...172,400,542 		JBrowse link
G Yap1 yes-associated protein 1 acts_upstream_of IMP (PMID:26902285) MGI PMID:26902285 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597 		JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of_or_within IDA (PMID:10742100) MGI PMID:10742100 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
G Tead4 TEA domain family member 4 acts_upstream_of_or_within IMP (PMID:18083014) MGI PMID:18083014 NCBI chr 6:128,204,106...128,277,776
Ensembl chr 6:128,201,251...128,277,786 		JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within IMP (PMID:10500095) MGI PMID:10500095 NCBI chr 1:80,242,640...80,318,426
Ensembl chr 1:80,242,640...80,318,197 		JBrowse link
G Esrrb estrogen related receptor, beta acts_upstream_of_or_within IMP (PMID:9285590) MGI PMID:9285590 NCBI chr12:86,407,891...86,568,402
Ensembl chr12:86,407,891...86,568,402 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:11456449) MGI PMID:11456449 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      cellular developmental process 5063
        cell differentiation 5062
          trophectodermal cell differentiation 26
            trophectodermal cell fate commitment 2
            trophectodermal cellular morphogenesis 3
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        multicellular organism development 5433
          embryo development 1382
            embryo development ending in birth or egg hatching 910
              chordate embryonic development 891
                in utero embryonic development 585
                  blastocyst development 165
                    blastocyst formation 60
                      trophectodermal cell differentiation 26
                        trophectodermal cell fate commitment 2
                        trophectodermal cellular morphogenesis 3
paths to the root