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ONTOLOGY REPORT - ANNOTATIONS


Term:trophectodermal cell differentiation
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Accession:GO:0001829 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a trophectoderm cell.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19'.
Synonyms:exact_synonym: trophectoderm cell differentiation



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trophectodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO MGI:1857117 (MGI:1095761|PMID:9272950) RGD PMID:9272950 MGI:1095761 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO MGI:3696711 (MGI:3695521|PMID:17138661) RGD PMID:17138661 MGI:3695521 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO MGI:1857928 (MGI:3612803|PMID:16325584), (MGI:4819480|PMID:20404091), (MGI:5644240|PMID:25397698)
MGI:1857928 (MGI:3578587|PMID:15788452), (MGI:3612803|PMID:16325584), (MGI:4819480|PMID:20404091), (MGI:5644240|PMID:25397698)
RGD PMID:15788452 PMID:16325584 PMID:20404091 PMID:25397698 MGI:3578587 MGI:3612803 MGI:4819480 MGI:5644240 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (MGI:3628724|PMID:16579983) RGD PMID:16579983 MGI:3628724 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 7:52,130,444...52,222,338
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 involved_in ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:101893 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Foxd3 forkhead box D3 acts_upstream_of_or_within ISO MGI:2388719 (MGI:3604420|PMID:16039639) RGD PMID:16039639 MGI:3604420 NCBI chr 5:114,334,693...114,337,788
Ensembl chr 5:114,335,408...114,336,817
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213
JBrowse link
G Hopx HOP homeobox acts_upstream_of_or_within ISO MGI:2389233 (MGI:3722454|PMID:17576768)
(PMID:17576768)
RGD PMID:17576768 MGI:3722454 NCBI chr14:31,055,912...31,082,909
Ensembl chr14:31,075,148...31,082,909
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2153821 (MGI:1332277|PMID:10022836), (MGI:2138058|PMID:11456449) RGD PMID:10022836 PMID:11456449 MGI:1332277 MGI:2138058 NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO MGI:1201683 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:5644240 NCBI chr 2:168,198,324...168,242,011
Ensembl chr 2:168,198,463...168,242,011
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of ISO (MGI:3718872|PMID:17507372) RGD PMID:17507372 MGI:3718872 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:17576768) RGD PMID:17576768 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO MGI:3040993 (MGI:4819480|PMID:20404091) RGD PMID:20404091 MGI:4819480 NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO MGI:3056522|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1355046|PMID:10742100)
GO_REF:0000107
RGD
Ensembl
PMID:10742100 GO_REF:0000107 MGI:1355046 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,869,552...125,214,862
Ensembl chr 4:124,869,552...125,214,824
JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO MGI:106907 (MGI:3770613|PMID:18083014) RGD PMID:18083014 MGI:3770613 NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323
JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within ISO MGI:2651546 (MGI:1345775|PMID:10500095) RGD PMID:10500095 MGI:1345775 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Esrrb estrogen-related receptor beta acts_upstream_of_or_within ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:106,007,662...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:1856970|MGI:2158730 (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    developmental process 6893
      cellular developmental process 4533
        cell differentiation 4510
          trophectodermal cell differentiation 27
            trophectodermal cell fate commitment 3
            trophectodermal cellular morphogenesis 3
Path 2
Term Annotations click to browse term
  biological_process 18734
    developmental process 6893
      anatomical structure development 6368
        multicellular organism development 5437
          embryo development 1366
            embryo development ending in birth or egg hatching 885
              chordate embryonic development 868
                in utero embryonic development 563
                  blastocyst development 161
                    blastocyst formation 60
                      trophectodermal cell differentiation 27
                        trophectodermal cell fate commitment 3
                        trophectodermal cellular morphogenesis 3
paths to the root