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ONTOLOGY REPORT - ANNOTATIONS


Term:trophectodermal cell differentiation
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Accession:GO:0001829 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a trophectoderm cell.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, trophectoderm ; EMAP:19'.
Synonyms:exact_synonym: trophectoderm cell differentiation


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trophectodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:MGI:1857117 (MGI:MGI:1095761|PMID:9272950) RGD PMID:9272950 MGI:MGI:1095761 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Bysl bystin-like ISO
IEA
(MGI:MGI:3700849|PMID:17242206)
GO_REF:0000107
RGD
Ensembl
PMID:17242206 GO_REF:0000107, MGI:MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Cdh1 cadherin 1 ISO MGI:MGI:3696711 (MGI:MGI:3695521|PMID:17138661) RGD PMID:17138661 MGI:MGI:3695521 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:MGI:1857928 (MGI:MGI:3612803|PMID:16325584), (MGI:MGI:4819480|PMID:20404091), (MGI:MGI:5644240|PMID:25397698) RGD PMID:16325584, PMID:20404091, PMID:25397698 MGI:MGI:3612803, MGI:MGI:4819480, MGI:MGI:5644240 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:2176158 (MGI:MGI:3628724|PMID:16579983) RGD PMID:16579983 MGI:MGI:3628724 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 ISO (MGI:MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:MGI:5487505 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 ISO (MGI:MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:MGI:5487505 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 ISO (MGI:MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:MGI:5487505 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Eomes eomesodermin ISO MGI:MGI:101893 (MGI:MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:MGI:3612803 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Foxd3 forkhead box D3 ISO MGI:MGI:2388719 (MGI:MGI:3604420|PMID:16039639) RGD PMID:16039639 MGI:MGI:3604420 NCBI chr 5:118,346,283...118,349,120 JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hopx HOP homeobox ISO (PMID:17576768)
MGI:MGI:2389233 (MGI:MGI:3722454|PMID:17576768)
RGD PMID:17576768 MGI:MGI:3722454 NCBI chr14:33,354,803...33,362,547
Ensembl chr14:33,354,807...33,362,551
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit IEA
ISO
GO_REF:0000107
MGI:MGI:2153821 (MGI:MGI:1332277|PMID:10022836), (MGI:MGI:2138058|PMID:11456449)
Ensembl
RGD
PMID:10022836, PMID:11456449 GO_REF:0000107, MGI:MGI:1332277, MGI:MGI:2138058 NCBI chr19:26,092,972...26,094,756
Ensembl chr19:26,092,974...26,094,756
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:MGI:2138058 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO MGI:MGI:1201683 (MGI:MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:MGI:3612803 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rbm46 RNA binding motif protein 46 ISO (MGI:MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:MGI:5644240 NCBI chr 2:181,828,931...181,874,223
Ensembl chr 2:181,831,244...181,874,223
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:MGI:1277166 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:MGI:98372 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Srf serum response factor ISO (PMID:17576768) RGD PMID:17576768 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO MGI:MGI:3040993 (MGI:MGI:4819480|PMID:20404091) RGD PMID:20404091 MGI:MGI:4819480 NCBI chr 3:170,550,314...170,558,197
Ensembl chr 3:170,550,314...170,558,194
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:MGI:3056522|MGI:MGI:4819826 (MGI:MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:MGI:6116315 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle2 prickle planar cell polarity protein 2 ISO MGI:MGI:4941925 (MGI:MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:MGI:5319591 NCBI chr 4:124,238,167...124,584,176
Ensembl chr 4:124,238,167...124,338,176
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO MGI:MGI:106907 (MGI:MGI:3770613|PMID:18083014) RGD PMID:18083014 MGI:MGI:3770613 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 ISO
IEA
MGI:MGI:2651546 (MGI:MGI:1345775|PMID:10500095)
GO_REF:0000107
RGD
Ensembl
PMID:10500095 GO_REF:0000107, MGI:MGI:1345775 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Esrrb estrogen-related receptor beta ISO MGI:MGI:1857422 (MGI:MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:MGI:1095811 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:1856970|MGI:MGI:2158730 (MGI:MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:MGI:2138058 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      cellular developmental process 4459
        cell differentiation 4363
          trophectodermal cell differentiation 26
            trophectodermal cell fate commitment 2
            trophectodermal cellular morphogenesis 3
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          embryo development 1307
            embryo development ending in birth or egg hatching 860
              chordate embryonic development 844
                in utero embryonic development 544
                  blastocyst development 157
                    blastocyst formation 59
                      trophectodermal cell differentiation 26
                        trophectodermal cell fate commitment 2
                        trophectodermal cellular morphogenesis 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.