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ONTOLOGY REPORT - ANNOTATIONS


Term:blastocyst formation
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Accession:GO:0001825 term browser browse the term
Definition:The initial formation of a blastocyst from a solid ball of cells known as a morula.
Comment:See also the Anatomical Dictionary for Mouse Development ontology term 'TS3, compacted morula ; EMAP:9'.


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blastocyst formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 3 32,708,546 32,726,973 RGD:2290270
G Bysl bystin-like JBrowse link 17 47,599,331 47,611,492 RGD:2290270
G Ccnb1ip1 cyclin B1 interacting protein 1 JBrowse link 14 50,789,249 50,795,728 RGD:2290270
G Furin furin (paired basic amino acid cleaving enzyme) JBrowse link 7 80,389,194 80,405,441 RGD:2290270
G Gabpa GA repeat binding protein, alpha JBrowse link 16 84,834,891 84,863,783 RGD:2290270
G Kdm4c lysine (K)-specific demethylase 4C JBrowse link 4 74,242,497 74,405,864 RGD:2290270
G Matr3 matrin 3 JBrowse link 18 35,562,158 35,592,045 RGD:2290270
G Mfn2 mitofusin 2 JBrowse link 4 147,873,586 147,904,909 RGD:2290270
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 15 78,755,882 78,773,516 RGD:2290270
G Mxi1 MAX interactor 1, dimerization protein JBrowse link 19 53,310,128 53,373,293 RGD:2290270
G Nop2 NOP2 nucleolar protein JBrowse link 6 125,131,883 125,144,753 RGD:2290270
G Pbrm1 polybromo 1 JBrowse link 14 31,019,138 31,121,592 RGD:2290270
G Pnldc1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 JBrowse link 17 12,888,723 12,910,580 RGD:2290270
G Pramel7 preferentially expressed antigen in melanoma like 7 JBrowse link 2 87,489,088 87,492,418 RGD:2290270
G Prickle2 prickle planar cell polarity protein 2 JBrowse link 6 92,370,891 92,706,334 RGD:2290270
G Ptpn18 protein tyrosine phosphatase, non-receptor type 18 JBrowse link 1 34,459,729 34,473,784 RGD:2290270
G Rpl7l1 ribosomal protein L7-like 1 JBrowse link 17 46,773,907 46,782,656 RGD:2290270
G Rrp7a ribosomal RNA processing 7 homolog A (S. cerevisiae) JBrowse link 15 83,115,846 83,122,801 RGD:2290270
G Rtn4 reticulon 4 JBrowse link 11 29,692,898 29,744,414 RGD:2290270
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 1 54,985,169 55,027,501 RGD:2290270
G Sf3b6 splicing factor 3B, subunit 6 JBrowse link 12 4,817,608 4,827,659 RGD:2290270
G Skil SKI-like JBrowse link 3 31,095,058 31,122,923 RGD:2290270
G Supt6 SPT6, histone chaperone and transcription elongation factor JBrowse link 11 78,206,749 78,245,972 RGD:2290270
G Tead4 TEA domain family member 4 JBrowse link 6 128,227,143 128,300,813 RGD:2290270
G Tjp1 tight junction protein 1 JBrowse link 7 65,296,165 65,527,850 RGD:2290270
G Tm4sf1 transmembrane 4 superfamily member 1 JBrowse link 3 57,285,611 57,387,736 RGD:2290270
G Txnrd3 thioredoxin reductase 3 JBrowse link 6 89,643,988 89,675,529 RGD:2290270
G Uspl1 ubiquitin specific peptidase like 1 JBrowse link 5 149,184,560 149,215,434 RGD:2290270
G Wdr74 WD repeat domain 74 JBrowse link 19 8,735,795 8,740,624 RGD:2290270
G Zp3 zona pellucida glycoprotein 3 JBrowse link 5 135,980,105 135,988,624 RGD:2290270
inner cell mass cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 7 111,028,951 111,056,377 RGD:2290270
G Hnf1b HNF1 homeobox B JBrowse link 11 83,850,209 83,905,917 RGD:2290270
G Nle1 notchless homolog 1 JBrowse link 11 82,900,768 82,908,446 RGD:2290270
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 10 62,804,570 62,887,469 RGD:2290270
inner cell mass cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lats1 large tumor suppressor JBrowse link 10 7,681,200 7,716,461 RGD:2290270
G Lats2 large tumor suppressor 2 JBrowse link 14 57,689,662 57,746,212 RGD:2290270
G Prdm14 PR domain containing 14 JBrowse link 1 13,113,428 13,127,163 RGD:2290270
inner cell mass cellular morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lats1 large tumor suppressor JBrowse link 10 7,681,200 7,716,461 RGD:2290270
G Lats2 large tumor suppressor 2 JBrowse link 14 57,689,662 57,746,212 RGD:2290270
G Sox17 SRY (sex determining region Y)-box 17 JBrowse link 1 4,490,928 4,497,426 RGD:2290270
trophectodermal cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 2 163,726,571 163,750,239 RGD:2290270
G Bysl bystin-like JBrowse link 17 47,599,331 47,611,492 RGD:2290270
G Cdh1 cadherin 1 JBrowse link 8 106,603,350 106,670,247 RGD:2290270
G Cdx2 caudal type homeobox 2 JBrowse link 5 147,300,900 147,307,249 RGD:2290270
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 JBrowse link 10 17,723,228 17,725,674 RGD:2290270
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 8 95,719,451 95,808,113 RGD:2290270
G Cnot2 CCR4-NOT transcription complex, subunit 2 JBrowse link 10 116,485,160 116,581,900 RGD:2290270
G Cnot3 CCR4-NOT transcription complex, subunit 3 JBrowse link 7 3,645,247 3,661,109 RGD:2290270
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 7 111,028,951 111,056,377 RGD:2290270
G Eomes eomesodermin JBrowse link 9 118,478,186 118,486,132 RGD:2290270
G Foxd3 forkhead box D3 JBrowse link 4 99,656,299 99,658,671 RGD:2290270
G Hopx HOP homeobox JBrowse link 5 77,086,986 77,115,123 RGD:2290270
G Junb jun B proto-oncogene JBrowse link 8 84,976,909 84,978,748 RGD:2290270
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270
G Pou5f1 POU domain, class 5, transcription factor 1 JBrowse link 17 35,506,032 35,510,777 RGD:2290270
G Rbm46 RNA binding motif protein 46 JBrowse link 3 82,836,521 82,876,512 RGD:2290270
G Sp1 trans-acting transcription factor 1 JBrowse link 15 102,406,316 102,436,404 RGD:2290270
G Sp3 trans-acting transcription factor 3 JBrowse link 2 72,936,430 72,980,446 RGD:2290270
G Srf serum response factor JBrowse link 17 46,546,838 46,558,267 RGD:2290270
G Tfap2c transcription factor AP-2, gamma JBrowse link 2 172,545,678 172,558,622 RGD:2290270
G Yap1 yes-associated protein 1 JBrowse link 9 7,931,999 8,004,638 RGD:2290270
trophectodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prickle2 prickle planar cell polarity protein 2 JBrowse link 6 92,370,891 92,706,334 RGD:2290270
G Tead4 TEA domain family member 4 JBrowse link 6 128,227,143 128,300,813 RGD:2290270
trophectodermal cellular morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cul3 cullin 3 JBrowse link 1 80,264,923 80,340,690 RGD:2290270
G Esrrb estrogen related receptor, beta JBrowse link 12 86,361,117 86,521,628 RGD:2290270
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23162
    developmental process 6415
      anatomical structure formation involved in morphogenesis 1189
        blastocyst formation 59
          inner cell mass cell differentiation + 8
          trophectodermal cell differentiation + 25
Path 2
Term Annotations click to browse term
  biological_process 23162
    developmental process 6415
      anatomical structure development 5942
        multicellular organism development 5433
          embryo development 1233
            embryo development ending in birth or egg hatching 852
              chordate embryonic development 836
                in utero embryonic development 543
                  blastocyst development 157
                    blastocyst formation 59
                      inner cell mass cell differentiation + 8
                      trophectodermal cell differentiation + 25
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.