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ONTOLOGY REPORT - ANNOTATIONS

Term:immunological synapse formation
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Accession:GO:0001771 term browser browse the term
Definition:The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction.
Synonyms:exact_synonym: formation of immunological synapse


show annotations for term's descendants           Sort by:
immunological synapse formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr 5:61,759,220...61,761,164
Ensembl chr 5:56,963,364...56,965,308 		JBrowse link
G Ccl21 C-C motif chemokine ligand 21 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr 5:61,776,411...61,777,515
Ensembl chr 5:56,980,558...56,981,686 		JBrowse link
G Cd2ap CD2-associated protein acts_upstream_of_or_within ISO MGI:2664945 (PMID:14512504) RGD PMID:14512504 NCBI chr 9:25,580,071...25,679,968
Ensembl chr 9:18,086,984...18,182,199 		JBrowse link
G Cd6 Cd6 molecule involved_in ISO
IEA 		(PMID:15294938)
GO_REF:0000107 		RGD
Ensembl		 PMID:15294938 GO_REF:0000107 NCBI chr 1:207,442,873...207,481,703
Ensembl chr 1:207,442,877...207,481,634 		JBrowse link
G Cd81 Cd81 molecule involved_in ISS
ISO 		GO_REF:0000024
(PMID:23858057) 		UniProt
RGD		 PMID:23858057 GO_REF:0000024 NCBI chr 1:207,665,274...207,681,094
Ensembl chr 1:198,241,484...198,251,660 		JBrowse link
G Coro1a coronin 1A NOT|involved_in ISO (PMID:24760828) RGD PMID:24760828 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:15699074)
GO_REF:0000107 		RGD
Ensembl		 PMID:15699074 GO_REF:0000107 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:68,911,883...69,102,689 		JBrowse link
G Dock2 dedicator of cytokinesis 2 acts_upstream_of_or_within ISO
IEA 		MGI:2152031 (PMID:12871644)
GO_REF:0000107 		RGD
Ensembl		 PMID:12871644 GO_REF:0000107 NCBI chr10:19,331,412...19,748,987
Ensembl chr10:18,827,239...19,244,808 		JBrowse link
G Dock8 dedicator of cytokinesis 8 acts_upstream_of_or_within ISO
IEA 		MGI:3835421 (PMID:22006977)
GO_REF:0000107 		RGD
Ensembl		 PMID:22006977 GO_REF:0000107 NCBI chr 1:222,649,309...222,842,474
Ensembl chr 1:222,649,309...222,842,474 		JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within IGI PMID:17310244 MGI PMID:17310244 PMID:17310244 RGD:10047256, RGD:10047256 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Git1 GIT ArfGAP 1 acts_upstream_of_or_within IGI PMID:17310244 MGI PMID:17310244 PMID:17310244 RGD:10047256, RGD:10047256 NCBI chr10:62,342,082...62,356,379
Ensembl chr10:62,342,299...62,356,373 		JBrowse link
G Msn moesin involved_in ISO
IEA
ISS 		(PMID:27405666)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27405666 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:60,996,043...61,064,011
Ensembl chr  X:60,995,951...61,065,628 		JBrowse link
G Nck2 NCK adaptor protein 2 acts_upstream_of_or_within IGI PMID:17310244 MGI PMID:17310244 PMID:17310244 RGD:10047256, RGD:10047256 NCBI chr 9:53,206,006...53,332,417
Ensembl chr 9:45,714,883...45,840,307 		JBrowse link
G Prf1 perforin 1 involved_in ISO
IBA
IEA 		(PMID:21438968)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:21438968 GO_REF:0000033 GO_REF:0000107 NCBI chr20:29,246,202...29,251,712
Ensembl chr20:29,246,202...29,251,701 		JBrowse link
negative regulation of immunological synapse formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO (PMID:24337741) RGD PMID:24337741 NCBI chr10:30,882,484...30,914,018
Ensembl chr10:30,882,606...30,909,137 		JBrowse link
G Lgals3 galectin 3 involved_in ISO (PMID:19706535) RGD PMID:19706535 NCBI chr15:23,099,795...23,111,731
Ensembl chr15:20,607,692...20,632,025 		JBrowse link
positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr7 C-C motif chemokine receptor 7 involved_in ISO
IEA 		(PMID:15845453)
GO_REF:0000107 		RGD
Ensembl		 PMID:15845453 GO_REF:0000107 NCBI chr10:84,594,399...84,604,514
Ensembl chr10:84,097,381...84,108,309 		JBrowse link
positive regulation of immunological synapse formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr7 C-C motif chemokine receptor 7 involved_in ISO
IEA 		(PMID:15845453)
GO_REF:0000107 		RGD
Ensembl		 PMID:15845453 GO_REF:0000107 NCBI chr10:84,594,399...84,604,514
Ensembl chr10:84,097,381...84,108,309 		JBrowse link
G Nedd9 neural precursor cell expressed, developmentally down-regulated 9 involved_in ISO (PMID:27359298) RGD PMID:27359298 NCBI chr17:23,289,793...23,468,026
Ensembl chr17:23,282,326...23,468,019 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cell recognition 165
        cell-cell recognition 85
          immunological synapse formation 18
            negative regulation of immunological synapse formation 2
            positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation 1
            positive regulation of immunological synapse formation 2
            regulation of immunological synapse formation + 4
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cell activation 1242
        leukocyte activation 1084
          lymphocyte activation 878
            immunological synapse formation 18
              negative regulation of immunological synapse formation 2
              positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation 1
              positive regulation of immunological synapse formation 2
              regulation of immunological synapse formation + 4
paths to the root