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ONTOLOGY REPORT - ANNOTATIONS

Term:somitogenesis
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Accession:GO:0001756 term browser browse the term
Definition:The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.
Synonyms:exact_synonym: formation of mesodermal clusters
 xref: Wikipedia:Somitogenesis

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somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004955429:2,682,341...2,783,752
Ensembl chrNW_004955429:2,682,343...2,783,752 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545 		JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO (PMID:12636920) MGI PMID:12636920 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chrNW_004955419:4,604,883...4,626,675
Ensembl chrNW_004955419:4,607,507...4,626,608 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5545944|PMID:23072809)
(PMID:15902259)		 UniProt
MGI		 PMID:15902259 PMID:23072809 MGI:5545944 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (PMID:15170697)
(PMID:9272948)		 MGI PMID:9272948 PMID:15170697 NCBI chrNW_004955468:70,714...78,831
Ensembl chrNW_004955468:71,004...78,827 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO (PMID:15937931) MGI PMID:15937931 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (PMID:18794329) MGI PMID:18794329 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (MGI:3771770|PMID:18064677) UniProt PMID:18064677 MGI:3771770 NCBI chrNW_004955450:14,867,941...14,902,990 JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11124112) MGI PMID:11124112 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:15170214)
(PMID:11641270), (PMID:19779553)		 MGI PMID:11641270 PMID:15170214 PMID:19779553 NCBI chrNW_004955467:8,837,895...8,841,062
Ensembl chrNW_004955467:8,837,886...8,841,739 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035)
(PMID:15937931)		 MGI PMID:15937931 PMID:17325035 NCBI chrNW_004955451:16,192,228...16,197,103
Ensembl chrNW_004955451:16,191,186...16,197,574 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:15545629)
(PMID:10090727)		 MGI PMID:10090727 PMID:15545629 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISO (MGI:5545944|PMID:23072809)
(PMID:18234727)		 UniProt
MGI		 PMID:18234727 PMID:23072809 MGI:5545944 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15902259) MGI PMID:15902259 NCBI chrNW_004955416:15,447,959...15,450,209 JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004955402:10,392,308...10,502,576
Ensembl chrNW_004955402:10,392,308...10,502,576 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO (PMID:11124811), (PMID:21750544) MGI PMID:11124811 PMID:21750544 NCBI chrNW_004955469:617,029...617,610
Ensembl chrNW_004955469:617,029...617,610 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO (PMID:19531352)
(PMID:8565825)
(PMID:10929709)		 MGI PMID:8565825 PMID:10929709 PMID:19531352 NCBI chrNW_004955405:19,345,943...19,348,453
Ensembl chrNW_004955405:19,345,943...19,348,453 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO (PMID:7588068) MGI PMID:7588068 NCBI chrNW_004955405:19,336,798...19,338,610
Ensembl chrNW_004955405:19,336,718...19,338,670 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (MGI:1267297|PMID:9621431) BHF-UCL PMID:9621431 MGI:1267297 NCBI chrNW_004955403:46,807,846...46,809,924
Ensembl chrNW_004955403:46,806,178...46,836,310 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (PMID:24875805) MGI PMID:24875805 NCBI chrNW_004955481:9,821,329...9,830,350
Ensembl chrNW_004955481:9,821,329...9,830,555 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:20484223) MGI PMID:20484223 NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (PMID:16093716) MGI PMID:16093716 NCBI chrNW_004955415:29,413,253...29,420,682
Ensembl chrNW_004955415:29,413,253...29,420,682 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (PMID:12591245) MGI PMID:12591245 NCBI chrNW_004955404:50,403,752...50,413,264 JBrowse link
G Plxna2 plexin A2 involved_in ISO (MGI:4355631|PMID:19666519) BHF-UCL PMID:19666519 MGI:4355631 NCBI chrNW_004955489:3,914,137...4,116,780
Ensembl chrNW_004955489:3,914,633...4,116,825 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:12697902) MGI PMID:12697902 NCBI chrNW_004955422:28,809,901...28,833,186
Ensembl chrNW_004955422:28,809,901...28,833,186 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:9636176) MGI PMID:9636176 NCBI chrNW_004955427:19,188,512...19,206,050
Ensembl chrNW_004955427:19,188,183...19,206,050 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955501:2,648,017...2,751,999
Ensembl chrNW_004955501:2,648,017...2,752,057 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208), (PMID:19779553)
(PMID:9153393)		 MGI PMID:9153393 PMID:10557208 PMID:19779553 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208), (PMID:19779553) MGI PMID:10557208 PMID:19779553 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:19779553) MGI PMID:19779553 NCBI chrNW_004955443:18,783,061...19,029,441
Ensembl chrNW_004955443:18,783,061...18,910,228 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:3613215|PMID:16326386)
(PMID:17531978)		 UniProt
MGI		 PMID:16326386 PMID:17531978 MGI:3613215 NCBI chrNW_004955411:11,418,744...11,422,766 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO (MGI:4355631|PMID:19666519) BHF-UCL PMID:19666519 MGI:4355631 NCBI chrNW_004955410:4,795,658...4,953,460
Ensembl chrNW_004955410:4,794,477...4,954,906 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:1349347|PMID:10654605)
(PMID:16467359)		 BHF-UCL
MGI		 PMID:10654605 PMID:16467359 MGI:1349347 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:16467359) MGI PMID:16467359 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004955414:22,322,954...22,324,412
Ensembl chrNW_004955414:22,323,031...22,324,367 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:15155583) MGI PMID:15155583 NCBI chrNW_004955411:12,194,560...12,232,374
Ensembl chrNW_004955411:12,194,550...12,232,374 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:8293872)
(PMID:16835439)
(PMID:15384171)		 MGI PMID:8293872 PMID:15384171 PMID:16835439 NCBI chrNW_004955439:15,675,680...15,683,542
Ensembl chrNW_004955439:15,676,095...15,683,554 		JBrowse link
G Tcap titin-cap involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chrNW_004955451:14,413,657...14,414,735
Ensembl chrNW_004955451:14,413,657...14,414,735 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:8955271) MGI PMID:8955271 NCBI chrNW_004955597:446,489...452,003
Ensembl chrNW_004955597:446,855...451,949 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:17320900) MGI PMID:17320900 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
G Ttn titin involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chrNW_004955403:18,057,344...18,328,389 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:12636920)
(PMID:16291790), (PMID:8299937)		 MGI PMID:8299937 PMID:12636920 PMID:16291790 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO (PMID:17116431) MGI PMID:17116431 NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16157277), (PMID:16598713) MGI PMID:16157277 PMID:16598713 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955501:2,648,017...2,751,999
Ensembl chrNW_004955501:2,648,017...2,752,057 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004955415:4,337,903...4,355,782
Ensembl chrNW_004955415:4,337,903...4,355,782 		JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004955434:5,528,625...5,535,783 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISO (PMID:19061953)
(PMID:19779553)		 UniProt
MGI		 PMID:19061953 PMID:19779553 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:7789282) MGI PMID:7789282 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004955453:11,463,407...11,558,001
Ensembl chrNW_004955453:11,463,379...11,558,006 		JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15889094) MGI PMID:15889094 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (PMID:18794329) MGI PMID:18794329 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004955413:6,493,734...6,516,315 JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004955416:15,447,959...15,450,209 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004955490:9,167,071...9,172,101
Ensembl chrNW_004955490:9,167,183...9,169,773 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:3613215|PMID:16326386)
(PMID:20346937)		 UniProt
MGI		 PMID:16326386 PMID:20346937 MGI:3613215 NCBI chrNW_004955411:11,418,744...11,422,766 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (PMID:9420335) MGI PMID:9420335 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004955493:6,888,832...6,894,840
Ensembl chrNW_004955493:6,888,832...6,894,831 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:14960495) MGI PMID:14960495 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004955451:17,013,180...17,022,131
Ensembl chrNW_004955451:17,012,982...17,022,186 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004955410:18,924,669...18,988,478
Ensembl chrNW_004955410:18,924,605...18,988,478 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15469977) MGI PMID:15469977 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure formation involved in morphogenesis 1158
        somitogenesis 71
          Notch signaling pathway involved in somitogenesis + 1
          Wnt signaling pathway involved in somitogenesis 4
          axis elongation involved in somitogenesis + 5
          fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
          regulation of somitogenesis 7
          retinoic acid receptor signaling pathway involved in somitogenesis 1
          somite rostral/caudal axis specification 12
          somite specification 3
Path 2
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        multicellular organism development 4550
          pattern specification process 445
            regionalization 411
              segmentation 102
                somitogenesis 71
                  Notch signaling pathway involved in somitogenesis + 1
                  Wnt signaling pathway involved in somitogenesis 4
                  axis elongation involved in somitogenesis + 5
                  fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
                  regulation of somitogenesis 7
                  retinoic acid receptor signaling pathway involved in somitogenesis 1
                  somite rostral/caudal axis specification 12
                  somite specification 3
paths to the root