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ONTOLOGY REPORT - ANNOTATIONS

Term:somitogenesis
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Accession:GO:0001756 term browser browse the term
Definition:The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.
Synonyms:exact_synonym: formation of mesodermal clusters
 xref: Wikipedia:Somitogenesis


show annotations for term's descendants           Sort by:
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3578145 (MGI:3577662|PMID:15755804)		 Ensembl
RGD		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr17:85,098,837...85,179,829
Ensembl chr17:85,098,550...85,179,792 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:104779 (MGI:3624894|PMID:16687486) RGD PMID:16687486 MGI:3624894 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3037351|PMID:12636920)		 Ensembl
RGD		 PMID:12636920 GO_REF:0000107 MGI:3037351 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5296388|PMID:22072575)		 CAFA
RGD		 PMID:22072575 GO_REF:0000024 MGI:5296388 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1096325 (MGI:3578712|PMID:15902259)
(MGI:5545944|PMID:23072809)		 UniProt
RGD		 PMID:15902259 PMID:23072809 GO_REF:0000024 MGI:3578712 MGI:5545944 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857008 (MGI:1095777|PMID:9272948), (MGI:3620337|PMID:15170697)
GO_REF:0000107		 RGD
Ensembl		 PMID:9272948 PMID:15170697 GO_REF:0000107 MGI:1095777 MGI:3620337 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO MGI:1343101 (MGI:3583034|PMID:15937931) RGD PMID:15937931 MGI:3583034 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (MGI:3771770|PMID:18064677) RGD PMID:18064677 MGI:3771770 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO UniProtKB:Q61850 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO UniProtKB:Q61572 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO MGI:1929432 (MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:1928688 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2652222|MGI:3046536 (MGI:2152470|PMID:11641270), (MGI:3046002|PMID:15170214), (MGI:4367298|PMID:19779553) RGD PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr10:53,824,124...53,828,934
Ensembl chr10:53,825,574...53,828,097 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) RGD PMID:15857914 MGI:3578569 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO MGI:1276116|MGI:3711317 (MGI:3583034|PMID:15937931), (MGI:3709911|PMID:17325035) RGD PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1933764|MGI:98504 (MGI:1334099|PMID:10090727), (MGI:3510574|PMID:15545629)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 PMID:15545629 GO_REF:0000107 MGI:1334099 MGI:3510574 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5545944|PMID:23072809)
MGI:3775061 (MGI:3774705|PMID:18234727)		 UniProt
Ensembl
RGD		 PMID:18234727 PMID:23072809 GO_REF:0000024 GO_REF:0000107 MGI:3774705 MGI:5545944 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839486 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:104659|MGI:3580268 (MGI:3578712|PMID:15902259) RGD PMID:15902259 MGI:3578712 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,802,519...1,926,988
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) RGD PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219|MGI:1857973|MGI:2449231 (MGI:1861090|PMID:10929709), (MGI:3849775|PMID:19531352), (MGI:78390|PMID:8565825) RGD PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO MGI:1857220 (MGI:76810|PMID:7588068) RGD PMID:7588068 MGI:76810 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (MGI:1267297|PMID:9621431) RGD PMID:9621431 MGI:1267297 NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO MGI:2176174|MGI:5553357 (MGI:5608942|PMID:24875805) RGD PMID:24875805 MGI:5608942 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO MGI:3801303 (MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:4459579 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:3603176 (MGI:3590033|PMID:16093716) RGD PMID:16093716 MGI:3590033 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (MGI:2451199|PMID:12591245) RGD PMID:12591245 MGI:2451199 NCBI chr15:55,198,470...55,203,039
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Plxna2 plexin A2 involved_in ISO (MGI:4355631|PMID:19666519) RGD PMID:19666519 MGI:4355631 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO MGI:2662305 (MGI:2660984|PMID:12697902) RGD PMID:12697902 MGI:2660984 NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2137554 (MGI:1267118|PMID:9636176)		 Ensembl
RGD		 PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO MGI:107202 (MGI:3624894|PMID:16687486) RGD PMID:16687486 MGI:3624894 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:109284|MGI:1930934 (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553), (MGI:87649|PMID:9153393) RGD PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) RGD PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1857411 (MGI:4367298|PMID:19779553) RGD PMID:19779553 MGI:4367298 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in		 ISO MGI:3513254 (MGI:3715395|PMID:17531978)
(MGI:3613215|PMID:16326386)		 RGD PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO (MGI:4355631|PMID:19666519) RGD PMID:19666519 MGI:4355631 NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within
involved_in		 ISO MGI:108078 (MGI:3618960|PMID:16467359)
(MGI:1349347|PMID:10654605)		 RGD PMID:10654605 PMID:16467359 MGI:1349347 MGI:3618960 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:892014 (MGI:3618960|PMID:16467359) RGD PMID:16467359 MGI:3618960 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO MGI:3606185 (MGI:5918349|PMID:28893950) RGD PMID:28893950 MGI:5918349 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3044914 (MGI:3044041|PMID:15155583)		 RGD PMID:15155583 PMID:21873635 MGI:3044041, RGD:13792537 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:1856158|MGI:1857760|MGI:3042264 (MGI:3056222|PMID:15384171), (MGI:3701028|PMID:16835439), (MGI:64493|PMID:8293872)
PMID:21873635		 RGD PMID:8293872 PMID:15384171 PMID:16835439 PMID:21873635 MGI:3056222 MGI:3701028 MGI:64493, RGD:13792537 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcap titin-cap involved_in ISO (MGI:1314551|PMID:9817758) RGD PMID:9817758 MGI:1314551 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1343101 (MGI:3709913|PMID:17320900)
GO_REF:0000107		 RGD
Ensembl		 PMID:17320900 GO_REF:0000107 MGI:3709913 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ttn titin involved_in ISO (MGI:1314551|PMID:9817758) RGD PMID:9817758 MGI:1314551 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857088|MGI:1857489 (MGI:3037351|PMID:12636920), (MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937) RGD PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1298218 (MGI:4413372|PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO MGI:1927345 (MGI:3708426|PMID:17116431) RGD PMID:17116431 MGI:3708426 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387501 (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) RGD PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98956 (MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:1891551 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839484 (MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:4839483 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1298218 (MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:1891551 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)		 Ensembl
RGD		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5545944|PMID:23072809)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23072809 GO_REF:0000024 GO_REF:0000107 MGI:5545944 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5301472|PMID:22015720)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22015720 GO_REF:0000024 GO_REF:0000107 MGI:5301472 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO (MGI:5301472|PMID:22015720) RGD PMID:22015720 MGI:5301472 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5689216|PMID:26114479)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26114479 GO_REF:0000024 GO_REF:0000107 MGI:5689216 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO MGI:3512139|MGI:97487 (MGI:3820487|PMID:17974128) RGD PMID:17974128 MGI:3820487 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19061953)
GO_REF:0000107
MGI:1933734 (MGI:4367298|PMID:19779553)		 RGD
Ensembl		 PMID:19061953 PMID:19779553 GO_REF:0000107 MGI:4367298 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1857230 (MGI:72973|PMID:7789282) RGD PMID:7789282 MGI:72973 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1330307|MGI:1856173 (MGI:3820487|PMID:17974128) RGD PMID:17974128 MGI:3820487 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1100864|MGI:1857891 (MGI:3578715|PMID:15889094) RGD PMID:15889094 MGI:3578715 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3580268 (MGI:4459001|PMID:20346937)		 RGD PMID:20346937 PMID:21873635 MGI:4459001, RGD:13792537 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5438570 (MGI:5438472|PMID:21998026) RGD PMID:21998026 MGI:5438472 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in		 ISO MGI:3614797 (MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)		 RGD PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)		 Ensembl
RGD		 PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:4456438 (MGI:4453264|PMID:20178780)
GO_REF:0000107		 RGD
Ensembl		 PMID:20178780 GO_REF:0000107 MGI:4453264 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in ISO
IEA		 (MGI:76306|PMID:7586755)
GO_REF:0000107		 RGD
Ensembl		 PMID:7586755 GO_REF:0000107 MGI:76306 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3038950 (MGI:3034157|PMID:14960495)		 Ensembl
RGD		 PMID:14960495 GO_REF:0000107 MGI:3034157 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO MGI:103219 (MGI:2669571|PMID:12925591) RGD PMID:12925591 MGI:2669571 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:103220 (MGI:2669571|PMID:12925591)
GO_REF:0000107		 RGD
Ensembl		 PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:108078|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2673982 (MGI:3055483|PMID:15469977)
PMID:21873635		 RGD PMID:15469977 PMID:21873635 MGI:3055483, RGD:13792537 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108078|MGI:1329040 (MGI:3793375|PMID:18257070)		 Ensembl
RGD		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:1329040|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    developmental process 6909
      anatomical structure formation involved in morphogenesis 1353
        somitogenesis 77
          Notch signaling pathway involved in somitogenesis + 1
          Wnt signaling pathway involved in somitogenesis 4
          axis elongation involved in somitogenesis + 5
          fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
          regulation of somitogenesis 7
          retinoic acid receptor signaling pathway involved in somitogenesis 1
          somite rostral/caudal axis specification 14
          somite specification 4
Path 2
Term Annotations click to browse term
  biological_process 19553
    developmental process 6909
      anatomical structure development 6435
        multicellular organism development 5184
          pattern specification process 500
            regionalization 455
              segmentation 114
                somitogenesis 77
                  Notch signaling pathway involved in somitogenesis + 1
                  Wnt signaling pathway involved in somitogenesis 4
                  axis elongation involved in somitogenesis + 5
                  fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
                  regulation of somitogenesis 7
                  retinoic acid receptor signaling pathway involved in somitogenesis 1
                  somite rostral/caudal axis specification 14
                  somite specification 4
paths to the root