ONTOLOGY REPORT - ANNOTATIONS |
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Term: | somitogenesis |
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Accession: | GO:0001756
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browse the term
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Definition: | The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo. |
Synonyms: | exact_synonym: | formation of mesodermal clusters |
| xref: | Wikipedia:Somitogenesis |
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Abi1 |
abl-interactor 1 |
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IEA ISO |
GO_REF:0000107 MGI:3578145 (MGI:3577662|PMID:15755804) |
Ensembl RGD |
PMID:15755804 |
GO_REF:0000107 MGI:3577662 |
NCBI chr17:89,951,662...90,033,334
Ensembl chr17:89,951,752...90,033,328
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Atm |
ATM serine/threonine kinase |
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ISO |
MGI:104779 (MGI:3624894|PMID:16687486) |
RGD |
PMID:16687486 |
MGI:3624894 |
NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
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Axin2 |
axin 2 |
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IEA ISO |
GO_REF:0000107 (MGI:3037351|PMID:12636920) |
Ensembl RGD |
PMID:12636920 |
GO_REF:0000107 MGI:3037351 |
NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
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Bmpr1a |
bone morphogenetic protein receptor type 1A |
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ISO |
MGI:2158343 (MGI:3702797|PMID:16943278) |
RGD |
PMID:16943278 |
MGI:3702797 |
NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
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Crb2 |
crumbs cell polarity complex component 2 |
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ISS ISO |
GO_REF:0000024 (MGI:5296388|PMID:22072575) |
UniProt RGD |
PMID:22072575 |
GO_REF:0000024 MGI:5296388 |
NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
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Dll1 |
delta like canonical Notch ligand 1 |
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ISS ISO |
GO_REF:0000024 MGI:1096325 (MGI:3578712|PMID:15902259), (MGI:5545944|PMID:23072809) |
UniProt RGD |
PMID:15902259 PMID:23072809 |
GO_REF:0000024 MGI:3578712 MGI:5545944 |
NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
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Dll3 |
delta like canonical Notch ligand 3 |
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IEA ISO |
GO_REF:0000107 MGI:1857008 (MGI:1095777|PMID:9272948), (MGI:3620337|PMID:15170697) |
Ensembl RGD |
PMID:9272948 PMID:15170697 |
GO_REF:0000107 MGI:1095777 MGI:3620337 |
NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
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Ep300 |
E1A binding protein p300 |
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ISO |
MGI:1343101 (MGI:3583034|PMID:15937931) |
RGD |
PMID:15937931 |
MGI:3583034 |
NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
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Epb41l5 |
erythrocyte membrane protein band 4.1 like 5 |
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ISO |
MGI:3822451 (MGI:3821807|PMID:18794329) |
RGD |
PMID:18794329 |
MGI:3821807 |
NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
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Foxb1 |
forkhead box B1 |
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ISS ISO |
GO_REF:0000024 (MGI:3771770|PMID:18064677) |
UniProt RGD |
PMID:18064677 |
GO_REF:0000024 MGI:3771770 |
NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
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Foxc1 |
forkhead box C1 |
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ISO |
UniProtKB:Q61850 (MGI:2150572|PMID:11562355) |
RGD |
PMID:11562355 |
MGI:2150572 |
NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
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Foxc2 |
forkhead box C2 |
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ISO |
UniProtKB:Q61572 (MGI:2150572|PMID:11562355) |
RGD |
PMID:11562355 |
MGI:2150572 |
NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
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Foxf1 |
forkhead box F1 |
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ISO |
MGI:1929432 (MGI:1928688|PMID:11124112) |
RGD |
PMID:11124112 |
MGI:1928688 |
NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
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Hes7 |
hes family bHLH transcription factor 7 |
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ISO |
MGI:2652222|MGI:3046536 (MGI:2152470|PMID:11641270), (MGI:3046002|PMID:15170214), (MGI:4367298|PMID:19779553) |
RGD |
PMID:11641270 PMID:15170214 PMID:19779553 |
MGI:2152470 MGI:3046002 MGI:4367298 |
NCBI chr10:55,704,485...55,710,523
Ensembl chr10:55,707,164...55,709,687
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Ifitm1 |
interferon induced transmembrane protein 1 |
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ISO |
(MGI:3578569|PMID:15857914) |
RGD |
PMID:15857914 |
MGI:3578569 |
NCBI chr 1:213,765,825...213,767,841
Ensembl chr 1:213,766,758...213,767,815
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Kat2a |
lysine acetyltransferase 2A |
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ISO |
MGI:1276116|MGI:3711317 (MGI:3583034|PMID:15937931), (MGI:3709911|PMID:17325035) |
RGD |
PMID:15937931 PMID:17325035 |
MGI:3583034 MGI:3709911 |
NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
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Lef1 |
lymphoid enhancer binding factor 1 |
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IEA ISO |
GO_REF:0000107 MGI:1933764|MGI:98504 (MGI:1334099|PMID:10090727), (MGI:3510574|PMID:15545629) |
Ensembl RGD |
PMID:10090727 PMID:15545629 |
GO_REF:0000107 MGI:1334099 MGI:3510574 |
NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
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Lfng |
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
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ISS ISO |
GO_REF:0000024 MGI:3775061 (MGI:3774705|PMID:18234727), (MGI:5545944|PMID:23072809) |
UniProt RGD |
PMID:18234727 PMID:23072809 |
GO_REF:0000024 MGI:3774705 MGI:5545944 |
NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
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Lrp6 |
LDL receptor related protein 6 |
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ISO |
MGI:98958 (MGI:4413372|PMID:19795512) |
RGD |
PMID:19795512 |
MGI:4413372 |
NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
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Med12 |
mediator complex subunit 12 |
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ISO |
MGI:4839486 (MGI:4839544|PMID:20589884) |
RGD |
PMID:20589884 |
MGI:4839544 |
NCBI chr X:71,174,653...71,197,812
Ensembl chr X:71,174,699...71,197,812
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Mesp2 |
mesoderm posterior bHLH transcription factor 2 |
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ISO |
MGI:104659|MGI:3580268 (MGI:3578712|PMID:15902259) |
RGD |
PMID:15902259 |
MGI:3578712 |
NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
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Mib1 |
MIB E3 ubiquitin protein ligase 1 |
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ISO |
MGI:3603514 (MGI:3603078|PMID:16000382) |
RGD |
PMID:16000382 |
MGI:3603078 |
NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920
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Msgn1 |
mesogenin 1 |
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ISO |
MGI:1933263 (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) |
RGD |
PMID:11124811 PMID:21750544 |
MGI:1928575 MGI:5545970 |
NCBI chr 6:36,876,165...36,876,805
Ensembl chr 6:36,876,165...36,876,805
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Myf5 |
myogenic factor 5 |
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ISO |
MGI:1857219|MGI:1857973|MGI:2449231 (MGI:1861090|PMID:10929709), (MGI:3849775|PMID:19531352), (MGI:78390|PMID:8565825) |
RGD |
PMID:8565825 PMID:10929709 PMID:19531352 |
MGI:1861090 MGI:3849775 MGI:78390 |
NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
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Myf6 |
myogenic factor 6 |
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ISO |
MGI:1857220 (MGI:76810|PMID:7588068) |
RGD |
PMID:7588068 |
MGI:76810 |
NCBI chr 7:49,739,643...49,741,490
Ensembl chr 7:49,739,646...49,741,540
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Nckap1 |
NCK-associated protein 1 |
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ISO |
MGI:3578145 (MGI:3701029|PMID:16831833) |
RGD |
PMID:16831833 |
MGI:3701029 |
NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
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Nkx3-1 |
NK3 homeobox 1 |
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ISO |
(PMID:9621431) |
RGD |
PMID:9621431 |
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NCBI chr15:51,065,316...51,067,908
Ensembl chr15:51,065,316...51,068,421
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Nle1 |
notchless homolog 1 |
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ISO |
MGI:2176174|MGI:5553357 (MGI:5608942|PMID:24875805) |
RGD |
PMID:24875805 |
MGI:5608942 |
NCBI chr10:70,250,959...70,261,880
Ensembl chr10:70,250,959...70,259,553
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Palb2 |
partner and localizer of BRCA2 |
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ISO |
MGI:3801303 (MGI:4459579|PMID:20484223) |
RGD |
PMID:20484223 |
MGI:4459579 |
NCBI chr 1:192,064,586...192,088,547
Ensembl chr 1:192,064,589...192,088,520
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Pax1 |
paired box 1 |
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ISO |
MGI:3603176 (MGI:3590033|PMID:16093716) |
RGD |
PMID:16093716 |
MGI:3590033 |
NCBI chr 3:141,577,124...141,589,849
Ensembl chr 3:141,577,504...141,589,849
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Pcdh8 |
protocadherin 8 |
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ISO |
(MGI:2451199|PMID:12591245) |
RGD |
PMID:12591245 |
MGI:2451199 |
NCBI chr15:62,196,469...62,201,498
Ensembl chr15:62,197,060...62,200,837
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Plxna2 |
plexin A2 |
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ISO |
(PMID:19666519) |
RGD |
PMID:19666519 |
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NCBI chr13:113,373,569...113,570,774
Ensembl chr13:113,373,578...113,571,648
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Pofut1 |
protein O-fucosyltransferase 1 |
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ISO |
MGI:2662305 (MGI:2660984|PMID:12697902) |
RGD |
PMID:12697902 |
MGI:2660984 |
NCBI chr 3:148,722,864...148,749,743
Ensembl chr 3:148,722,955...148,747,208
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Poglut1 |
protein O-glucosyltransferase 1 |
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IEA ISO |
GO_REF:0000107 MGI:2137554 (MGI:1267118|PMID:9636176) |
Ensembl RGD |
PMID:9636176 |
GO_REF:0000107 MGI:1267118 |
NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
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Prkdc |
protein kinase, DNA-activated, catalytic subunit |
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ISO |
MGI:107202 (MGI:3624894|PMID:16687486) |
RGD |
PMID:16687486 |
MGI:3624894 |
NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
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Psen1 |
presenilin 1 |
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ISO |
MGI:109284|MGI:1930934 (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553), (MGI:87649|PMID:9153393) |
RGD |
PMID:9153393 PMID:10557208 PMID:19779553 |
MGI:1347695 MGI:4367298 MGI:87649 |
NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
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Psen2 |
presenilin 2 |
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ISO |
MGI:1202717 (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) |
RGD |
PMID:10557208 PMID:19779553 |
MGI:1347695 MGI:4367298 |
NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
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Rbpj |
recombination signal binding protein for immunoglobulin kappa J region |
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ISO |
MGI:1857411 (MGI:4367298|PMID:19779553) |
RGD |
PMID:19779553 |
MGI:4367298 |
NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
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Ripply2 |
ripply transcriptional repressor 2 |
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ISO |
MGI:3513254 (MGI:3613215|PMID:16326386), (MGI:3715395|PMID:17531978) |
RGD |
PMID:16326386 PMID:17531978 |
MGI:3613215 MGI:3715395 |
NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
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Ror2 |
receptor tyrosine kinase-like orphan receptor 2 |
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ISO |
MGI:2183225 (MGI:3037488|PMID:14745966) |
RGD |
PMID:14745966 |
MGI:3037488 |
NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
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Sema3c |
semaphorin 3C |
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ISO |
(PMID:19666519) |
RGD |
PMID:19666519 |
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NCBI chr 4:14,318,276...14,490,438
Ensembl chr 4:14,318,274...14,490,446
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Sfrp1 |
secreted frizzled-related protein 1 |
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ISO |
MGI:108078 (MGI:3618960|PMID:16467359), (PMID:10654605) |
RGD |
PMID:10654605 PMID:16467359 |
MGI:3618960 |
NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
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Sfrp2 |
secreted frizzled-related protein 2 |
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ISO |
MGI:892014 (MGI:3618960|PMID:16467359) |
RGD |
PMID:16467359 |
MGI:3618960 |
NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
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Smad3 |
SMAD family member 3 |
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ISO |
MGI:108051 (MGI:3618021|PMID:15183723) |
RGD |
PMID:15183723 |
MGI:3618021 |
NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
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Tbx18 |
T-box transcription factor 18 |
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ISO IBA |
MGI:3044914 (MGI:3044041|PMID:15155583) PMID:21873635 |
RGD |
PMID:15155583, PMID:21873635 |
MGI:3044041, RGD:13792537 |
NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
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Tbx19 |
T-box transcription factor 19 |
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IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr13:83,403,263...83,426,305
Ensembl chr13:83,403,264...83,425,641
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Tbxt |
T-box transcription factor T |
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ISO IBA |
MGI:1856158|MGI:1857760|MGI:3042264 (MGI:3056222|PMID:15384171), (MGI:3701028|PMID:16835439), (MGI:64493|PMID:8293872) PMID:21873635 |
RGD |
PMID:8293872 PMID:15384171 PMID:16835439, PMID:21873635 |
MGI:3056222 MGI:3701028 MGI:64493, RGD:13792537 |
NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
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Tcap |
titin-cap |
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ISO |
(PMID:9817758) |
RGD |
PMID:9817758 |
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NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
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Tcf15 |
transcription factor 15 |
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ISO |
MGI:1929775 (MGI:84545|PMID:8955271) |
RGD |
PMID:8955271 |
MGI:84545 |
NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
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Tmed2 |
transmembrane p24 trafficking protein 2 |
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ISO |
MGI:4456438 (MGI:4453264|PMID:20178780) |
RGD |
PMID:20178780 |
MGI:4453264 |
NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
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Tp53 |
tumor protein p53 |
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ISO |
MGI:1343101 (MGI:3709913|PMID:17320900) |
RGD |
PMID:17320900 |
MGI:3709913 |
NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
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Ttn |
titin |
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ISO |
(PMID:9817758) |
RGD |
PMID:9817758 |
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NCBI chr 3:63,565,160...63,837,815
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Wnt3a |
Wnt family member 3A |
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ISO |
MGI:1857088|MGI:1857489 (MGI:3037351|PMID:12636920), (MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937) |
RGD |
PMID:8299937 PMID:12636920 PMID:16291790 |
MGI:3037351 MGI:3611726 MGI:64780 |
NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
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Wnt5a |
Wnt family member 5A |
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IEA ISO |
GO_REF:0000107 MGI:1298218 (MGI:4413372|PMID:19795512) |
Ensembl RGD |
PMID:19795512 |
GO_REF:0000107 MGI:4413372 |
NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
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Xrcc2 |
X-ray repair cross complementing 2 |
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ISO |
MGI:1927345 (MGI:3708426|PMID:17116431) |
RGD |
PMID:17116431 |
MGI:3708426 |
NCBI chr 4:5,842,013...5,860,516
Ensembl chr 4:5,841,998...5,860,527
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Zeb2 |
zinc finger E-box binding homeobox 2 |
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ISO |
MGI:2387501 (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) |
RGD |
PMID:16157277 PMID:16598713 |
MGI:3590396 MGI:3624924 |
NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
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Lrp6 |
LDL receptor related protein 6 |
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ISO IBA |
MGI:98956 (MGI:1891551|PMID:11029008) PMID:21873635 |
RGD |
PMID:11029008, PMID:21873635 |
MGI:1891551, RGD:13792537 |
NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
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Med12 |
mediator complex subunit 12 |
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ISO |
MGI:4839484 (MGI:4839483|PMID:20630950) |
RGD |
PMID:20630950 |
MGI:4839483 |
NCBI chr X:71,174,653...71,197,812
Ensembl chr X:71,174,699...71,197,812
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Wnt3a |
Wnt family member 3A |
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ISO |
MGI:1298218 (MGI:1891551|PMID:11029008) |
RGD |
PMID:11029008 |
MGI:1891551 |
NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
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Sfrp1 |
secreted frizzled-related protein 1 |
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IEA ISO |
GO_REF:0000107 MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070) |
Ensembl RGD |
PMID:18257070 |
GO_REF:0000107 MGI:3793375 |
NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
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Lfng |
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
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ISS ISO |
GO_REF:0000024 (MGI:5545944|PMID:23072809) |
UniProt RGD |
PMID:23072809 |
GO_REF:0000024 MGI:5545944 |
NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
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Nrarp |
Notch-regulated ankyrin repeat protein |
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ISO |
MGI:5317888 (MGI:5317364|PMID:21795391) |
RGD |
PMID:21795391 |
MGI:5317364 |
NCBI chr 3:2,396,143...2,398,697
Ensembl chr 3:2,396,143...2,398,689
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Ppp2r3a |
protein phosphatase 2, regulatory subunit B'', alpha |
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ISO |
UniProtKB:F6T226 (PMID:15687260) |
RGD |
PMID:15687260 |
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NCBI chr 8:109,481,352...109,621,462
Ensembl chr 8:109,482,614...109,621,408
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Cdx1 |
caudal type homeo box 1 |
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ISS ISO IEA |
GO_REF:0000024 (MGI:5301472|PMID:22015720) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:22015720 |
GO_REF:0000024 GO_REF:0000107 MGI:5301472 |
NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490
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Cdx2 |
caudal type homeo box 2 |
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ISO |
(MGI:5301472|PMID:22015720) |
RGD |
PMID:22015720 |
MGI:5301472 |
NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
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Dll1 |
delta like canonical Notch ligand 1 |
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IEA ISO ISS |
GO_REF:0000107 (MGI:5689216|PMID:26114479) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:26114479 |
GO_REF:0000024 GO_REF:0000107 MGI:5689216 |
NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
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Dmrt2 |
doublesex and mab-3 related transcription factor 2 |
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ISO |
MGI:3512139|MGI:97487 (MGI:3820487|PMID:17974128) |
RGD |
PMID:17974128 |
MGI:3820487 |
NCBI chr 1:243,662,819...243,669,312
Ensembl chr 1:243,662,823...243,669,312
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Lfng |
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
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ISO |
(PMID:19061953) MGI:1933734 (MGI:4367298|PMID:19779553) |
RGD |
PMID:19061953 PMID:19779553 |
MGI:4367298 |
NCBI chr12:16,117,767...16,126,211
Ensembl chr12:16,118,634...16,126,953
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Notch1 |
notch receptor 1 |
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ISO |
MGI:1857230 (MGI:72973|PMID:7789282) |
RGD |
PMID:7789282 |
MGI:72973 |
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Pax3 |
paired box 3 |
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ISO |
MGI:1330307|MGI:1856173 (MGI:3820487|PMID:17974128) |
RGD |
PMID:17974128 |
MGI:3820487 |
NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
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Aldh1a2 |
aldehyde dehydrogenase 1 family, member A2 |
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ISO |
MGI:1100864|MGI:1857891 (MGI:3578715|PMID:15889094) |
RGD |
PMID:15889094 |
MGI:3578715 |
NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
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Epb41l5 |
erythrocyte membrane protein band 4.1 like 5 |
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ISO |
MGI:3822451 (MGI:3821807|PMID:18794329) |
RGD |
PMID:18794329 |
MGI:3821807 |
NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
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Foxa2 |
forkhead box A2 |
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ISO |
MGI:1857725 (MGI:2157654|PMID:11291865) |
RGD |
PMID:11291865 |
MGI:2157654 |
NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
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Gdf3 |
growth differentiation factor 3 |
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ISO |
MGI:3612535 (MGI:3611720|PMID:16368929) |
RGD |
PMID:16368929 |
MGI:3611720 |
NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
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Kdm6a |
lysine demethylase 6A |
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ISO |
MGI:5448825 (MGI:5448135|PMID:22949634) |
RGD |
PMID:22949634 |
MGI:5448135 |
NCBI chr X:4,805,493...4,945,788
Ensembl chr X:4,806,277...4,945,944
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Lhx1 |
LIM homeobox 1 |
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ISO |
MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865) |
RGD |
PMID:11291865 |
MGI:2157654 |
NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
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Mesp1 |
mesoderm posterior bHLH transcription factor 1 |
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IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
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Mesp2 |
mesoderm posterior bHLH transcription factor 2 |
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ISO IBA |
MGI:3580268 (MGI:4459001|PMID:20346937) PMID:21873635 |
RGD |
PMID:20346937, PMID:21873635 |
MGI:4459001, RGD:13792537 |
NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
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Nrarp |
Notch-regulated ankyrin repeat protein |
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ISO |
MGI:5438570 (MGI:5438472|PMID:21998026) |
RGD |
PMID:21998026 |
MGI:5438472 |
NCBI chr 3:2,396,143...2,398,697
Ensembl chr 3:2,396,143...2,398,689
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Otx2 |
orthodenticle homeobox 2 |
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ISO |
MGI:1857502 (MGI:2157654|PMID:11291865) |
RGD |
PMID:11291865 |
MGI:2157654 |
NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
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Ripply1 |
ripply transcriptional repressor 1 |
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ISO |
MGI:2685968 (MGI:4459001|PMID:20346937) |
RGD |
PMID:20346937 |
MGI:4459001 |
NCBI chr X:111,099,420...111,114,835
Ensembl chr X:111,099,930...111,102,464
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Ripply2 |
ripply transcriptional repressor 2 |
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ISO |
MGI:3614797 (MGI:3613215|PMID:16326386), (MGI:4459001|PMID:20346937) |
RGD |
PMID:16326386 PMID:20346937 |
MGI:3613215 MGI:4459001 |
NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
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Smad4 |
SMAD family member 4 |
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IEA ISO |
GO_REF:0000107 MGI:1858049 (MGI:1195384|PMID:9420335) |
Ensembl RGD |
PMID:9420335 |
GO_REF:0000107 MGI:1195384 |
NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
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Tbx6 |
T-box transcription factor 6 |
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ISO |
(MGI:4459001|PMID:20346937) |
RGD |
PMID:20346937 |
MGI:4459001 |
NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706
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Tmed2 |
transmembrane p24 trafficking protein 2 |
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ISO |
MGI:4456438 (MGI:4453264|PMID:20178780) |
RGD |
PMID:20178780 |
MGI:4453264 |
NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
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Cobl |
cordon-bleu WH2 repeat protein |
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ISO IEA |
(PMID:7586755) GO_REF:0000107 |
RGD Ensembl |
PMID:7586755 |
GO_REF:0000107 |
NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
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Dll1 |
delta like canonical Notch ligand 1 |
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IEA ISO |
GO_REF:0000107 MGI:3038950 (MGI:3034157|PMID:14960495) |
Ensembl RGD |
PMID:14960495 |
GO_REF:0000107 MGI:3034157 |
NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
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Meox1 |
mesenchyme homeobox 1 |
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ISO |
MGI:103219 (MGI:2669571|PMID:12925591) |
RGD |
PMID:12925591 |
MGI:2669571 |
NCBI chr10:89,797,011...89,817,009
Ensembl chr10:89,797,038...89,816,491
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Meox2 |
mesenchyme homeobox 2 |
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IEA ISO |
GO_REF:0000107 MGI:103220 (MGI:2669571|PMID:12925591) |
Ensembl RGD |
PMID:12925591 |
GO_REF:0000107 MGI:2669571 |
NCBI chr 6:56,625,768...56,689,195
Ensembl chr 6:56,625,650...56,689,238
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Dkk1 |
dickkopf WNT signaling pathway inhibitor 1 |
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ISO |
MGI:108078|MGI:892014 (MGI:3793375|PMID:18257070) |
RGD |
PMID:18257070 |
MGI:3793375 |
NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
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Lrp6 |
LDL receptor related protein 6 |
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ISO IBA |
MGI:2673982 (MGI:3055483|PMID:15469977) PMID:21873635 |
RGD |
PMID:15469977, PMID:21873635 |
MGI:3055483, RGD:13792537 |
NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
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Sfrp1 |
secreted frizzled-related protein 1 |
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IEA ISO |
GO_REF:0000107 MGI:108078|MGI:1329040 (MGI:3793375|PMID:18257070) |
Ensembl RGD |
PMID:18257070 |
GO_REF:0000107 MGI:3793375 |
NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
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G |
Sfrp2 |
secreted frizzled-related protein 2 |
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ISO |
MGI:1329040|MGI:892014 (MGI:3793375|PMID:18257070) |
RGD |
PMID:18257070 |
MGI:3793375 |
NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
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Term paths to the root
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