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ONTOLOGY REPORT - ANNOTATIONS


Term:neural crest cell migration
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Accession:GO:0001755 term browser browse the term
Definition:The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo.



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neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 acts_upstream_of_or_within IMP (PMID:15226263) MGI PMID:15226263 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169
JBrowse link
G Cfl1 cofilin 1, non-muscle acts_upstream_of_or_within IMP (PMID:15649475) MGI PMID:15649475 NCBI chr19:5,540,483...5,544,059
Ensembl chr19:5,540,483...5,545,229
JBrowse link
G Coro1c coronin, actin binding protein 1C involved_in ISO
IBA
MGI
GO_Central
GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 5:113,980,500...114,046,767
Ensembl chr 5:113,980,497...114,046,819
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within IMP (PMID:9624616) MGI PMID:9624616 NCBI chr 2:174,602,412...174,625,835
Ensembl chr 2:174,602,412...174,625,835
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP (PMID:10591209) MGI PMID:10591209 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838
JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_or_within IMP (PMID:15037550) MGI PMID:15037550 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in IMP (MGI:1352955|PMID:10655590) UniProt PMID:10655590 MGI:1352955 NCBI chr 1:68,071,063...69,147,756
Ensembl chr 1:68,071,345...69,147,218
JBrowse link
G Fgf15 fibroblast growth factor 15 acts_upstream_of_or_within IMP (PMID:15789410) MGI PMID:15789410 NCBI chr 7:144,450,269...144,454,690
Ensembl chr 7:144,450,268...144,454,690
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IMP (PMID:23144817)
(PMID:15996652), (PMID:19700621)
MGI PMID:15996652 PMID:19700621 PMID:23144817 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901
JBrowse link
G Gdnf glial cell line derived neurotrophic factor acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (PMID:14659802) MGI PMID:14659802 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Htr2b 5-hydroxytryptamine (serotonin) receptor 2B involved_in IMP (MGI:707955|PMID:9165122) UniProt PMID:9165122 MGI:707955 NCBI chr 1:86,025,268...86,043,960
Ensembl chr 1:86,026,748...86,039,692
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain acts_upstream_of_or_within IGI (PMID:16687132) MGI PMID:16687132 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225
JBrowse link
G Kitl kit ligand acts_upstream_of_or_within IDA (PMID:11401406) MGI PMID:11401406 NCBI chr10:99,851,477...99,936,278
Ensembl chr10:99,851,492...99,936,278
JBrowse link
G Lama5 laminin, alpha 5 acts_upstream_of_or_within IMP (PMID:16316641) MGI PMID:16316641 NCBI chr 2:179,818,166...179,867,652
Ensembl chr 2:179,818,166...179,867,652
JBrowse link
G Nrp1 neuropilin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Nrtn neurturin acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr17:57,058,323...57,064,548
Ensembl chr17:57,058,325...57,064,530
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (PMID:16423343) MGI PMID:16423343 NCBI chr 2:144,147,095...144,174,000
Ensembl chr 2:144,147,095...144,174,066
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within IMP (PMID:15384171) MGI PMID:15384171 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771
JBrowse link
G Pax6 paired box 6 involved_in ISO RGD
MGI
PMID:9079035 GO_REF:0000096 MGI:4417868 RGD:8552342 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IMP
IBA
(MGI:5302129|PMID:22215812) UniProt
GO_Central
PMID:22215812 GO_REF:0000033 MGI:5302129 NCBI chr 4:132,083,233...132,149,765
Ensembl chr 4:132,083,234...132,149,800
JBrowse link
G Radil Ras association and DIL domains involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:142,470,594...142,536,873
Ensembl chr 5:142,470,594...142,536,853
JBrowse link
G Ret ret proto-oncogene acts_upstream_of_or_within IMP (PMID:15242795) MGI PMID:15242795 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533
JBrowse link
G Sema3b sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:107,474,868...107,486,440
Ensembl chr 9:107,474,873...107,486,428
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C acts_upstream_of_or_within
involved_in
IMP
IBA
(PMID:11688556) MGI
GO_Central
PMID:11688556 GO_REF:0000033 NCBI chr 5:17,779,814...17,935,266
Ensembl chr 5:17,779,279...17,935,266
JBrowse link
G Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:12,433,133...12,638,920
Ensembl chr 5:12,433,352...12,638,915
JBrowse link
G Sema3e sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:14,075,290...14,306,703
Ensembl chr 5:14,075,290...14,306,703
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:107,558,698...107,587,674
Ensembl chr 9:107,558,699...107,587,674
JBrowse link
G Sema3g sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:30,939,830...30,952,309
Ensembl chr14:30,939,817...30,952,309
JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:88,343,266...88,368,500
Ensembl chr 3:88,343,266...88,368,489
JBrowse link
G Sema4b sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:79,836,618...79,876,394
Ensembl chr 7:79,836,589...79,876,275
JBrowse link
G Sema4c sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:36,587,720...36,599,780
Ensembl chr 1:36,587,720...36,597,430
JBrowse link
G Sema4d sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:51,839,565...51,947,823
Ensembl chr13:51,839,565...51,947,783
JBrowse link
G Sema4f sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:82,888,865...82,916,724
Ensembl chr 6:82,888,866...82,916,750
JBrowse link
G Sema4g sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:44,976,838...44,991,836
Ensembl chr19:44,977,540...44,991,836
JBrowse link
G Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:32,244,959...32,696,487
Ensembl chr15:32,244,956...32,696,487
JBrowse link
G Sema5b sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:35,361,517...35,485,103
Ensembl chr16:35,361,515...35,485,102
JBrowse link
G Sema6a sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:47,378,321...47,504,267
Ensembl chr18:47,368,665...47,501,937
JBrowse link
G Sema6b sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:56,430,085...56,447,343
Ensembl chr17:56,430,085...56,447,343
JBrowse link
G Sema6c sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:95,067,731...95,081,361
Ensembl chr 3:95,067,768...95,081,335
JBrowse link
G Sema6d sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:123,931,089...124,509,711
Ensembl chr 2:123,931,889...124,509,690
JBrowse link
G Sema7a sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:57,846,879...57,870,148
Ensembl chr 9:57,847,395...57,870,148
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (PMID:15936751) MGI PMID:15936751 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IGI (PMID:16687132) MGI PMID:16687132 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364
JBrowse link
G Sox10 SRY (sex determining region Y)-box 10 involved_in IMP
IBA
(MGI:3527299|PMID:15572147) UniProt
GO_Central
PMID:15572147 GO_REF:0000033 MGI:3527299 NCBI chr15:79,039,113...79,048,690
Ensembl chr15:79,039,108...79,049,440
JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 involved_in IMP (MGI:3527299|PMID:15572147) UniProt PMID:15572147 MGI:3527299 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726
JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP (PMID:15652707)
(PMID:20501333)
MGI PMID:15652707 PMID:20501333 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IMP (PMID:12522767) MGI PMID:12522767 NCBI chr 2:44,873,523...45,007,378
Ensembl chr 2:44,873,644...45,007,407
JBrowse link
cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in IMP (PMID:31219639) MGI PMID:31219639 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031
JBrowse link
G Edn1 endothelin 1 involved_in IDA (PMID:31219639) MGI PMID:31219639 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Ednra endothelin receptor type A involved_in IMP (PMID:31219639) MGI PMID:31219639 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Folr1 folate receptor alpha involved_in IMP (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within IMP (PMID:20144608) MGI PMID:20144608 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Nrp1 neuropilin 1 NOT|involved_in IMP (MGI:5693177|PMID:26053665) BHF-UCL PMID:26053665 MGI:5693177 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in IMP (MGI:2446944|PMID:12464179) BHF-UCL PMID:12464179 MGI:2446944 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (PMID:18539270) MGI PMID:18539270 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828
JBrowse link
neural crest cell migration involved in autonomic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn1 fibronectin 1 involved_in ISO (PMID:26571399) MGI PMID:26571399 NCBI chr 1:71,624,632...71,692,439
Ensembl chr 1:71,624,679...71,692,359
JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in ISO (PMID:26571399) MGI PMID:26571399 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056
JBrowse link
G Nrp1 neuropilin 1 involved_in IMP (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) ParkinsonsUK-UCL PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Nrp2 neuropilin 2 involved_in IMP (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:18356247 PMID:19386662 MGI:3788968 MGI:3848580 NCBI chr 1:62,742,476...62,857,851
Ensembl chr 1:62,742,444...62,857,854
JBrowse link
G Phox2b paired-like homeobox 2b involved_in IMP (MGI:1337891|PMID:10360575) BHF-UCL PMID:10360575 MGI:1337891 NCBI chr 5:67,251,751...67,256,399
Ensembl chr 5:67,251,742...67,256,644
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) ParkinsonsUK-UCL PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 9:107,558,698...107,587,674
Ensembl chr 9:107,558,699...107,587,674
JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in IMP (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995
JBrowse link
neural crest cell migration involved in sympathetic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:5567908|PMID:19325129) BHF-UCL PMID:19325129 MGI:5567908 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533
JBrowse link
positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IGI (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C involved_in IDA (MGI:5693177|PMID:26053665) BHF-UCL PMID:26053665 MGI:5693177 NCBI chr 5:17,779,814...17,935,266
Ensembl chr 5:17,779,279...17,935,266
JBrowse link
regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eng endoglin NOT|involved_in IMP (MGI:3721185|PMID:17628518) BHF-UCL PMID:17628518 MGI:3721185 NCBI chr 2:32,536,607...32,572,681
Ensembl chr 2:32,536,607...32,572,681
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin, alpha 5 acts_upstream_of_or_within IMP (PMID:16316641) MGI PMID:16316641 NCBI chr 2:179,818,166...179,867,652
Ensembl chr 2:179,818,166...179,867,652
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within IMP (PMID:16319111) MGI PMID:16319111 NCBI chr 1:62,742,476...62,857,851
Ensembl chr 1:62,742,444...62,857,854
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F acts_upstream_of_or_within IMP (PMID:16319111) MGI PMID:16319111 NCBI chr 9:107,558,698...107,587,674
Ensembl chr 9:107,558,699...107,587,674
JBrowse link
G Shh sonic hedgehog acts_upstream_of IDA (PMID:15337776) MGI PMID:15337776 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Nrp2 neuropilin 2 involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 1:62,742,476...62,857,851
Ensembl chr 1:62,742,444...62,857,854
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 9:107,558,698...107,587,674
Ensembl chr 9:107,558,699...107,587,674
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        cell development 3447
          stem cell development 98
            neural crest cell development 87
              neural crest cell migration 62
                cardiac neural crest cell migration involved in outflow tract morphogenesis + 12
                neural crest cell migration involved in autonomic nervous system development + 7
                neural crest cell migration involved in heart formation 1
                trunk neural crest cell migration + 6
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        animal organ development 3777
          mesenchyme development 342
            mesenchymal cell differentiation 281
              neural crest cell differentiation 100
                neural crest cell development 87
                  neural crest cell migration 62
                    cardiac neural crest cell migration involved in outflow tract morphogenesis + 12
                    neural crest cell migration involved in autonomic nervous system development + 7
                    neural crest cell migration involved in heart formation 1
                    trunk neural crest cell migration + 6
paths to the root