Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:eye photoreceptor cell differentiation
go back to main search page
Accession:GO:0001754 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms.


show annotations for term's descendants           Sort by:
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:29,440,150...29,590,457
Ensembl chr10:29,440,145...29,590,454 		JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr13:76,945,318...77,148,521
Ensembl chr13:76,945,395...77,147,072 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,992 		JBrowse link
camera-type eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:15316081) MGI PMID:15316081 NCBI chr10:20,137,246...20,332,539
Ensembl chr10:20,137,451...20,332,414 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:11,215,659...11,331,442
Ensembl chr 8:11,215,663...11,317,312 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:9,125,377...9,127,615
Ensembl chr 2:9,125,381...9,127,615 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) UniProt PMID:26287463 NCBI chr12:7,332,052...7,617,231 JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr13:13,933,552...14,043,108
Ensembl chr13:13,933,711...14,043,058 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:110,731,729...110,783,999
Ensembl chr 7:110,731,731...110,784,853 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,397...28,760,467 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:20,137,246...20,332,539
Ensembl chr10:20,137,451...20,332,414 		JBrowse link
G DZANK1 double zinc ribbon and ankyrin repeat domains 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:26,651,159...26,719,208
Ensembl chr17:26,651,161...26,719,492 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:1,300,286...1,311,562
Ensembl chr12:1,300,055...1,309,778 		JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chr 1:57,287,265...57,332,342
Ensembl chr 1:57,286,705...57,332,720 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,391 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:73,403,647...73,717,746
Ensembl chr 9:73,403,740...73,719,161 		JBrowse link
G MFRP membrane frizzled-related protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:46,550,383...46,556,305
Ensembl chr 9:46,550,315...46,556,077 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:169,358,662...169,373,175
Ensembl chr 1:169,360,729...169,366,087 		JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr 4:116,428,889...116,626,134
Ensembl chr 4:116,583,630...116,623,933 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,978,287...29,001,200 		JBrowse link
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 Ensembl chr 5:8,986,462...9,007,435 JBrowse link
G POC5 POC5 centriolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:84,689,592...84,730,980
Ensembl chr 2:84,689,370...84,730,951 		JBrowse link
G PRDM1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:72,309,096...72,335,474
Ensembl chr 1:72,311,880...72,335,466 		JBrowse link
G PRKCI protein kinase C iota acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:108,913,018...108,997,934
Ensembl chr13:108,913,173...108,997,931 		JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:59,274,383...59,293,139
Ensembl chr 6:59,274,387...59,292,765 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,648...227,772,671 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chr  X:34,238,961...34,522,814
Ensembl chr  X:34,228,124...34,296,589 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chr 7:77,813,964...77,903,973
Ensembl chr 7:77,813,775...77,903,928 		JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,499,628...1,506,180
Ensembl chr 2:1,499,620...1,506,170 		JBrowse link
G TULP1 TUB like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,362,670...31,379,948
Ensembl chr 7:31,361,873...31,379,204 		JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:38,746,393...38,762,282
Ensembl chr 7:38,746,052...38,761,366 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chr 1:186,028,575...186,039,026
Ensembl chr 1:186,028,579...186,038,229 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 6:70,876,329...71,029,495
Ensembl chr 6:70,878,983...70,933,357 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,397...28,760,467 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:5,068,535...5,079,482
Ensembl chr 2:5,068,037...5,072,188 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr 3:55,872,607...55,936,516
Ensembl chr 3:55,874,250...55,922,979 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,987...264,301,713 		JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within 		ISO (PMID:20203194) MGI PMID:20203194
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,512,349...110,523,222
Ensembl chr 4:110,498,707...110,524,072 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:29,439,294...29,808,855
Ensembl chr16:29,439,264...29,808,993 		JBrowse link
G MIR124A-1 microRNA mir-124a-1 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr 4:69,968,854...69,968,958
Ensembl chr 4:69,968,854...69,968,958 		JBrowse link
G MIR124A-2 microRNA mir-124a-2 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chr14:13,201,425...13,201,509
Ensembl chr14:13,201,425...13,201,509 		JBrowse link
G MIR183 microRNA mir-183 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr18:18,982,269...18,982,338
Ensembl chr18:18,982,269...18,982,338 		JBrowse link
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (PMID:23341629) MGI PMID:23341629 NCBI chr18:18,982,506...18,982,590
Ensembl chr18:18,982,506...18,982,590 		JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:105,010,974...105,122,628
Ensembl chr14:105,050,691...105,122,421 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,648...227,772,671 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610 		JBrowse link
G THRB thyroid hormone receptor beta acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr13:10,900,716...11,360,587
Ensembl chr13:10,900,724...11,359,544 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in ISO (PMID:10567740) UniProt PMID:10567740 NCBI chr 9:46,607,022...46,612,691
Ensembl chr 9:46,607,494...46,612,269 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,247 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:39,557,716...39,566,350
Ensembl chr 5:39,557,715...39,566,323 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,391 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,512,349...110,523,222
Ensembl chr 4:110,498,707...110,524,072 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of IEA Ensembl GO_REF:0000107
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,397...28,760,467 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr 3:69,253,742...69,417,043
Ensembl chr 3:69,253,750...69,417,189 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:60,631,913...60,693,359
Ensembl chr 7:60,631,914...60,693,334 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:62,217,583...62,228,599
Ensembl chr17:62,227,916...62,228,638 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253
G NAGLU N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr12:20,271,351...20,279,777 JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:75,199,048...75,211,655
Ensembl chr 7:75,206,719...75,210,529 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:30,030,050...30,429,938
Ensembl chr10:30,033,405...30,429,882 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,648...227,772,671 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610 		JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chr 6:63,287,449...63,308,231
Ensembl chr 6:63,287,713...63,308,482 		JBrowse link
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:108,622,402...108,641,412
Ensembl chr13:108,610,172...108,642,120 		JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr 1:143,718,295...143,856,968
Ensembl chr 1:143,709,864...143,855,984 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:39,557,716...39,566,350
Ensembl chr 5:39,557,715...39,566,323 		JBrowse link
G CNTF ciliary neurotrophic factor acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 2:12,492,777...12,495,401
Ensembl chr 2:12,493,169...12,496,159 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,391 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,512,349...110,523,222
Ensembl chr 4:110,498,707...110,524,072 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:39,208,115...39,235,879
Ensembl chr  X:39,208,119...39,235,758 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr18:12,219,708...12,309,045
Ensembl chr18:12,219,787...12,309,044 		JBrowse link
G RORB RAR related orphan receptor B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:227,573,972...227,776,806
Ensembl chr 1:227,574,648...227,772,671 		JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO
IEA 		(PMID:19490914) MGI
Ensembl		 PMID:19490914 GO_REF:0000107 NCBI chr 3:40,825,151...40,830,085
Ensembl chr 3:40,825,157...40,830,736 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within 		ISS
IEA
ISO 		(PMID:19490914) UniProt
Ensembl
MGI		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,992 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 6:70,876,329...71,029,495
Ensembl chr 6:70,878,983...70,933,357 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    cellular process 18486
      cellular developmental process 4591
        cell differentiation 4590
          neuron differentiation 1715
            photoreceptor cell differentiation 90
              eye photoreceptor cell differentiation 65
                camera-type eye photoreceptor cell differentiation + 43
                compound eye photoreceptor cell differentiation + 0
                eye photoreceptor cell development + 47
                eye photoreceptor cell fate commitment + 3
Path 2
Term Annotations click to browse term
  biological_process 18944
    developmental process 6804
      anatomical structure development 6384
        multicellular organism development 5152
          system development 4500
            nervous system development 2822
              neurogenesis 2092
                generation of neurons 1793
                  neuron differentiation 1715
                    photoreceptor cell differentiation 90
                      eye photoreceptor cell differentiation 65
                        camera-type eye photoreceptor cell differentiation + 43
                        compound eye photoreceptor cell differentiation + 0
                        eye photoreceptor cell development + 47
                        eye photoreceptor cell fate commitment + 3
paths to the root