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ONTOLOGY REPORT - ANNOTATIONS

Term:eye photoreceptor cell differentiation
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Accession:GO:0001754 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms.

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eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (PMID:16465590) UniProt PMID:16465590 NCBI chrNW_004624809:9,119,412...9,321,226
Ensembl chrNW_004624809:9,119,951...9,339,604 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
camera-type eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:15316081) MGI PMID:15316081 NCBI chrNW_004624798:2,861,481...2,999,387
Ensembl chrNW_004624798:2,861,520...2,999,697 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624755:15,765,162...15,886,023
Ensembl chrNW_004624755:15,771,286...15,886,348 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004624926:1,140,082...1,142,434
Ensembl chrNW_004624926:1,140,793...1,142,253 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) UniProt PMID:26287463 NCBI chrNW_004624801:3,412,950...3,667,030
Ensembl chrNW_004624801:3,416,835...3,666,635 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004624788:5,239,858...5,355,186
Ensembl chrNW_004624788:5,243,807...5,355,073 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004624734:13,437,234...13,497,269
Ensembl chrNW_004624734:13,437,221...13,497,510 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:12915475)
(PMID:12915475), (PMID:21052544) 		MGI PMID:12915475 PMID:21052544 NCBI chrNW_004624798:2,861,481...2,999,387
Ensembl chrNW_004624798:2,861,520...2,999,697 		JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:19,142,193...19,196,577
Ensembl chrNW_004624741:19,143,109...19,194,243 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO (PMID:16043865) MGI PMID:16043865 NCBI chrNW_004624801:10,511,539...10,518,073
Ensembl chrNW_004624801:10,511,673...10,517,753 		JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chrNW_004624799:4,841,856...4,900,704
Ensembl chrNW_004624799:4,841,898...4,900,172 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO (PMID:18367617) MGI PMID:18367617 NCBI chrNW_004624813:579,173...594,039
Ensembl chrNW_004624813:590,580...594,085 		JBrowse link
G LOC101698489 centrosomal protein POC5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:141,258...178,392 JBrowse link
G LOC101725169 centrosomal protein POC5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624905:2,678,562...2,693,966 JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:14,709,834...14,714,927
Ensembl chrNW_004624784:14,710,042...14,714,715 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624781:2,201,656...2,210,495
Ensembl chrNW_004624781:2,202,614...2,207,782 		JBrowse link
G Olfm3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chrNW_004624857:4,804,191...5,010,423
Ensembl chrNW_004624857:4,802,197...5,010,550 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chrNW_004624752:9,072,471...9,088,289
Ensembl chrNW_004624752:9,072,512...9,088,593 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:16,205,056...16,227,382
Ensembl chrNW_004624780:16,204,838...16,227,390 		JBrowse link
G Prkci protein kinase C iota acts_upstream_of_or_within ISO (PMID:16267237) MGI PMID:16267237 NCBI chrNW_004624730:48,258,524...48,340,217 JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (PMID:22605914) MGI PMID:22605914 NCBI chrNW_004624832:2,141,906...2,159,009
Ensembl chrNW_004624832:2,141,902...2,159,009 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740) UniProt PMID:16574740 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chrNW_004624762:17,135,870...17,199,693 JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:12651948) MGI PMID:12651948 NCBI chrNW_004624825:7,289,385...7,366,388
Ensembl chrNW_004624825:7,296,662...7,366,196 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) BHF-UCL PMID:16445854 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:19218615) UniProt PMID:19218615 NCBI chrNW_004624754:21,961,513...21,971,362 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:16251428) MGI PMID:16251428 NCBI chrNW_004624754:15,929,414...15,943,637 JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004624818:2,024,553...2,078,708
Ensembl chrNW_004624818:2,024,461...2,076,551 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624749:3,458,997...3,482,697
Ensembl chrNW_004624749:3,458,991...3,483,003 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) UniProt PMID:23001562 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO
IEA 		(PMID:20203194) MGI
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chrNW_004624734:2,611,864...2,613,932 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624759:9,636,380...10,044,832
Ensembl chrNW_004624759:9,636,457...10,049,403 		JBrowse link
G LOC101702208 calcium-binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:19,069,262...19,081,258
Ensembl chrNW_004624767:19,070,555...19,073,507 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004624737:4,804,630...4,867,565
Ensembl chrNW_004624737:4,810,806...4,867,370 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740) UniProt PMID:16574740 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624788:1,950,888...2,348,895
Ensembl chrNW_004624788:1,950,890...2,349,343 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO (PMID:10567740) UniProt PMID:10567740 NCBI chrNW_004624784:14,779,533...14,784,315
Ensembl chrNW_004624784:14,780,698...14,784,897 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004624750:21,759,412...21,763,608
Ensembl chrNW_004624750:21,759,495...21,766,679 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chrNW_004624762:129,349...268,945
Ensembl chrNW_004624762:128,491...269,006 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:15173597) MGI PMID:15173597 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Bhlhe23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chrNW_004624741:28,762,079...28,766,989
Ensembl chrNW_004624741:28,766,303...28,766,920 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chrNW_004624798:3,332,549...3,414,435 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:17712420) MGI PMID:17712420 NCBI chrNW_004624795:1,553,582...1,558,110
Ensembl chrNW_004624795:1,553,037...1,558,197 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624820:8,436,469...8,449,354
Ensembl chrNW_004624820:8,444,687...8,449,354 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:10516311) MGI PMID:10516311 NCBI chrNW_004624809:8,274,736...8,622,287
Ensembl chrNW_004624809:8,276,951...8,616,765 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:16574740), (PMID:19805139) UniProt PMID:16574740 PMID:19805139 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (PMID:14507858) UniProt PMID:14507858 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:7,289,385...7,366,388
Ensembl chrNW_004624825:7,296,662...7,366,196 		JBrowse link
G Rpgrip1l RPGRIP1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chrNW_004624818:8,563,376...8,581,028
Ensembl chrNW_004624818:8,563,879...8,581,015 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (PMID:33603070) UniProt PMID:33603070 NCBI chrNW_004624730:47,963,819...47,992,869
Ensembl chrNW_004624730:47,963,819...47,992,910 		JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chrNW_004624768:1,802,601...1,873,627
Ensembl chrNW_004624768:1,757,293...1,873,627 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004624750:21,759,412...21,763,608
Ensembl chrNW_004624750:21,759,495...21,766,679 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004624864:1,785,215...1,788,608
Ensembl chrNW_004624864:1,782,139...1,792,879 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:11,409,837...11,435,709
Ensembl chrNW_004624762:11,409,727...11,435,811 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004624765:17,523,086...17,625,264
Ensembl chrNW_004624765:17,522,916...17,548,184 		JBrowse link
G Rorb RAR related orphan receptor B acts_upstream_of_or_within ISO (PMID:25296752) MGI PMID:25296752 NCBI chrNW_004624811:2,076,474...2,281,933
Ensembl chrNW_004624811:2,076,437...2,277,040 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004624913:1,759,460...1,764,242
Ensembl chrNW_004624913:1,759,548...1,764,344 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004624795:1,648,235...1,680,788
Ensembl chrNW_004624795:1,648,080...1,681,200 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004624818:2,024,553...2,078,708
Ensembl chrNW_004624818:2,024,461...2,076,551 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17647
    cellular process 17219
      cellular developmental process 4329
        cell differentiation 4328
          neuron differentiation 1660
            photoreceptor cell differentiation 89
              eye photoreceptor cell differentiation 63
                camera-type eye photoreceptor cell differentiation + 41
                compound eye photoreceptor cell differentiation + 0
                eye photoreceptor cell development + 45
                eye photoreceptor cell fate commitment + 3
Path 2
Term Annotations click to browse term
  biological_process 17647
    developmental process 6435
      anatomical structure development 6017
        multicellular organism development 4847
          system development 4242
            nervous system development 2687
              neurogenesis 2007
                generation of neurons 1742
                  neuron differentiation 1660
                    photoreceptor cell differentiation 89
                      eye photoreceptor cell differentiation 63
                        camera-type eye photoreceptor cell differentiation + 41
                        compound eye photoreceptor cell differentiation + 0
                        eye photoreceptor cell development + 45
                        eye photoreceptor cell fate commitment + 3
paths to the root