Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:eye photoreceptor cell differentiation
go back to main search page
Accession:GO:0001754 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms.


show annotations for term's descendants           Sort by:
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:133,017,166...133,202,163
Ensembl chr 3:140,485,925...140,666,592 		JBrowse link
camera-type eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:15316081) MGI PMID:15316081 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
G DZANK1 double zinc ribbon and ankyrin repeat domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:18,345,187...18,429,142
Ensembl chr20:18,317,912...18,398,939 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:75,974,971...75,993,275
Ensembl chr17:81,687,051...81,694,823 		JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT|acts_upstream_of_or_within ISO (PMID:12019334) MGI PMID:12019334 NCBI chr 6:87,123,527...87,185,547
Ensembl chr 6:90,401,811...90,459,468 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:85,839,639...85,859,844
Ensembl chr 7:99,446,623...99,451,185 		JBrowse link
G MFRP membrane frizzled-related protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:114,179,998...114,187,716
Ensembl chr11:118,107,317...118,115,050 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:50,759,707...50,767,703
Ensembl chr15:69,525,351...69,533,034 		JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr 1:104,451,488...104,651,208
Ensembl chr 1:103,168,819...103,364,306 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PDGFB platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883 		JBrowse link
G POC5 POC5 centriolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:39,587,659...39,631,472
Ensembl chr 5:40,205,697...40,244,182 		JBrowse link
G PRDM1 PR/SET domain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:103,899,410...103,923,389
Ensembl chr 6:107,773,229...107,796,815 		JBrowse link
G PRKCI protein kinase C iota acts_upstream_of_or_within ISO (PMID:16267237) MGI PMID:16267237 NCBI chr 3:167,237,093...167,320,522
Ensembl chr 3:175,426,774...175,510,072 		JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G RPGRIP1 RPGR interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064 		JBrowse link
G TH tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433 		JBrowse link
G TULP1 TUB like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160 		JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:14625556) MGI PMID:14625556 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr2A:100,911,053...100,962,278
Ensembl chr2A:99,259,808...99,308,517 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:94,473,423...94,511,285
Ensembl chr 9:123,011,968...123,032,855 		JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (PMID:20203194) MGI PMID:20203194 NCBI chr14:82,188,126...82,190,220 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808 		JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:64,673,392...65,116,259
Ensembl chr 5:69,724,767...70,158,761 		JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:90,361,003...90,414,169
Ensembl chr10:93,871,704...93,924,654 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879 		JBrowse link
G THRB thyroid hormone receptor beta acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 3:24,024,025...24,401,024
Ensembl chr 3:24,346,824...24,564,960 		JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901 		JBrowse link
G USH1C USH1 protein network component harmonin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:17,548,501...17,598,923
Ensembl chr11:17,233,854...17,284,256 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:73,862,775...73,867,377
Ensembl chr12:76,713,028...76,716,956 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) CACAO PMID:20081859 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chr2A:73,438,657...73,671,313
Ensembl chr2A:74,926,650...75,152,139 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chr20:59,385,608...59,392,078 JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:17921253) MGI PMID:17921253 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242 		JBrowse link
G NRL neural retina leucine zipper involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:4,858,105...4,891,207
Ensembl chr14:22,982,367...22,998,187 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678 		JBrowse link
G RORB RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064 		JBrowse link
G RPGRIP1L RPGRIP1 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G SAMD11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) UniProt PMID:33603070
G SAMD7 sterile alpha motif domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:166,914,164...166,952,937
Ensembl chr 3:174,980,176...175,007,421 		JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chr15:9,492,500...9,653,644
Ensembl chr15:28,530,878...28,690,947 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BBS10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:73,862,775...73,867,377
Ensembl chr12:76,713,028...76,716,956 		JBrowse link
G CNTF ciliary neurotrophic factor acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:53,876,081...53,882,870
Ensembl chr11:57,336,792...57,341,121 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623 		JBrowse link
G RORB RAR related orphan receptor B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of
acts_upstream_of_or_within 		ISO (PMID:19490914) MGI PMID:19490914
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chr17:66,028,737...66,034,122 JBrowse link
G STAT3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:14,928,689...15,003,644
Ensembl chr17:15,152,358...15,227,067 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18868
      cellular developmental process 4505
        cell differentiation 4504
          neuron differentiation 1670
            photoreceptor cell differentiation 87
              eye photoreceptor cell differentiation 61
                camera-type eye photoreceptor cell differentiation + 41
                compound eye photoreceptor cell differentiation + 0
                eye photoreceptor cell development + 44
                eye photoreceptor cell fate commitment + 3
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 6695
      anatomical structure development 6275
        multicellular organism development 5035
          system development 4378
            nervous system development 2745
              neurogenesis 2030
                generation of neurons 1755
                  neuron differentiation 1670
                    photoreceptor cell differentiation 87
                      eye photoreceptor cell differentiation 61
                        camera-type eye photoreceptor cell differentiation + 41
                        compound eye photoreceptor cell differentiation + 0
                        eye photoreceptor cell development + 44
                        eye photoreceptor cell fate commitment + 3
paths to the root