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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor outer segment
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Accession:GO:0001750 term browser browse the term
Definition:The outer segment of a vertebrate photoreceptor that contains a stack of membrane discs embedded with photoreceptor proteins.


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photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 2:225,645,539...225,783,288
Ensembl chr 2:225,645,568...225,783,287
JBrowse link
G Ahi1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197) RGD PMID:20592197 MGI:4461813 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arr3 arrestin 3 IEA
ISO
GO_REF:0000044
(MGI:1354839|PMID:10725384), (MGI:3616100|PMID:12486395)
UniProt
RGD
PMID:10725384, PMID:12486395 GO_REF:0000044, MGI:1354839, MGI:3616100 NCBI chr  X:70,438,590...70,452,140
Ensembl chr  X:70,438,617...70,452,067
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 2:123,283,402...123,322,991
Ensembl chr 2:123,283,388...123,323,170
JBrowse link
G Bsg basigin (Ok blood group) ISS
ISO
GO_REF:0000024
(MGI:6436439|PMID:25957687)
UniProt
RGD
PMID:25957687 GO_REF:0000024, MGI:6436439 NCBI chr 7:12,875,536...12,882,753
Ensembl chr 7:12,875,537...12,882,753
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F IDA RGD PMID:11526344 RGD:632484 NCBI chr  X:15,712,709...15,741,135
Ensembl chr  X:15,712,713...15,741,103
JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6254746|PMID:28005958) RGD PMID:28005958 MGI:6254746 NCBI chr 3:151,508,366...151,544,631
Ensembl chr 3:151,508,361...151,544,674
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cerkl ceramide kinase-like ISO (MGI:5571037|PMID:23142158) RGD PMID:23142158 MGI:5571037 NCBI chr 3:66,268,835...66,395,615
Ensembl chr 3:66,268,947...66,394,764
JBrowse link
G Cfap410 cilia and flagella associated protein 410 ISO (PMID:27548899) RGD PMID:27548899 NCBI chr20:11,417,428...11,424,301
Ensembl chr20:11,417,429...11,424,324
JBrowse link
G Cib2 calcium and integrin binding family member 2 ISS
ISO
GO_REF:0000024
(MGI:5487486|PMID:23023331)
UniProt
RGD
PMID:23023331 GO_REF:0000024, MGI:5487486 NCBI chr 8:59,123,078...59,139,946
Ensembl chr 8:59,123,079...59,139,946
JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:1354839|PMID:10725384), (MGI:3527312|PMID:15634774), (MGI:4461813|PMID:20592197) RGD PMID:10725384, PMID:15634774, PMID:20592197 MGI:1354839, MGI:3527312, MGI:4461813 NCBI chr14:38,155,771...38,171,107
Ensembl chr14:38,155,759...38,171,010
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:1355614|PMID:10813773), (MGI:3527312|PMID:15634774) RGD PMID:10813773, PMID:15634774 MGI:1355614, MGI:3527312 NCBI chr 9:43,807,412...43,858,225
Ensembl chr 9:43,807,677...43,854,396
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr19:10,142,440...10,206,618
Ensembl chr19:10,142,496...10,206,681
JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO (MGI:3527312|PMID:15634774) RGD PMID:15634774 MGI:3527312 NCBI chr 5:33,097,353...33,507,467
Ensembl chr 5:33,097,654...33,507,467
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 IDA
ISO
(MGI:3778702|PMID:18367617), (MGI:4461813|PMID:20592197), (MGI:6383261|PMID:31696965)
(PMID:2534964)
RGD PMID:2534964, PMID:18367617, PMID:20592197, PMID:31696965, PMID:11931744, PMID:10396627 MGI:3778702, MGI:4461813, MGI:6383261, RGD:1599009, RGD:6893629 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 IDA
IBA
ISO
PMID:21873635
(PMID:2534964)
RGD PMID:2534964, PMID:17591908, PMID:21873635 RGD:2302146, RGD:13792537 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:13,827,764...13,878,126
Ensembl chr 4:13,827,756...13,878,126
JBrowse link
G Gnb1 G protein subunit beta 1 ISO (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr 5:172,914,025...172,981,403
Ensembl chr 5:172,934,990...172,979,986
JBrowse link
G Gnb5 G protein subunit beta 5 ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr 8:82,248,951...82,286,493
Ensembl chr 8:82,257,849...82,285,184
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744, PMID:10396627 RGD:1599009, RGD:6893629 NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
G Guca1a guanylate cyclase activator 1A IDA
ISO
(MGI:5587954|PMID:22183407) RGD PMID:22183407, PMID:9620085 MGI:5587954, RGD:1599354 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B IDA RGD PMID:9620085 RGD:1599354 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
G Guca2b guanylate cyclase activator 2B ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr 5:138,695,591...138,697,641
Ensembl chr 5:138,695,591...138,697,641
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal ISO (PMID:7912093) RGD PMID:7912093 NCBI chr10:55,835,695...55,851,235
Ensembl chr10:55,835,695...55,851,235
JBrowse link
G Hnf1a HNF1 homeobox A ISO MGI:96770 (MGI:1334099|PMID:10090727) RGD PMID:10090727 MGI:1334099 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) RGD PMID:24619649 MGI:5604762 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:87,733,374...87,879,958
Ensembl chr 8:87,733,545...87,879,888
JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:82,700,482...82,703,383
Ensembl chr 9:82,700,468...82,703,400
JBrowse link
G Iqcb1 IQ motif containing B1 ISO (MGI:3763297|PMID:15723066) RGD PMID:15723066 MGI:3763297 NCBI chr11:66,824,059...66,878,585
Ensembl chr11:66,824,065...66,878,551
JBrowse link
G Lyar Ly1 antibody reactive ISS
ISO
IEA
GO_REF:0000024
(MGI:6107438|PMID:25735755)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25735755 GO_REF:0000024, GO_REF:0000107, MGI:6107438 NCBI chr14:77,308,211...77,321,931
Ensembl chr14:77,308,204...77,321,977
JBrowse link
G Mak male germ cell-associated kinase ISS
ISO
GO_REF:0000024
(MGI:5298333|PMID:21148103)
UniProt
RGD
PMID:21148103 GO_REF:0000024, MGI:5298333 NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
JBrowse link
G Map1a microtubule-associated protein 1A ISO (MGI:5587952|PMID:24664738) RGD PMID:24664738 MGI:5587952 NCBI chr 3:113,251,918...113,272,193
Ensembl chr 3:113,251,778...113,272,186
JBrowse link
G Map1b microtubule-associated protein 1B ISO (MGI:5587952|PMID:24664738) RGD PMID:24664738 MGI:5587952 NCBI chr 2:29,675,391...29,768,750
Ensembl chr 2:29,675,391...29,768,750
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase IDA RGD PMID:11861639 RGD:1299193 NCBI chr 3:121,235,230...121,340,932
Ensembl chr 3:121,235,119...121,342,444
JBrowse link
G Myo3b myosin IIIB ISO (MGI:4352610|PMID:19332056) RGD PMID:19332056 MGI:4352610 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Myo5a myosin VA IEA
ISO
GO_REF:0000107
(MGI:3047015|PMID:14978221)
Ensembl
RGD
PMID:14978221 GO_REF:0000107, MGI:3047015 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Myo7a myosin VIIA NOT IDA
ISO
ISS
PMID:8842737
(MGI:81971|PMID:8842737)
GO_REF:0000024
(PMID:8842737)
RGD
UniProt
PMID:8842737, PMID:8842737 GO_REF:0000024, MGI:81971, RGD:8553559 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Myrip myosin VIIA and Rab interacting protein IEA
ISO
GO_REF:0000107
(MGI:2180422|PMID:11964381)
Ensembl
RGD
PMID:11964381 GO_REF:0000107, MGI:2180422 NCBI chr 8:128,972,307...129,139,257
Ensembl chr 8:128,972,311...129,139,251
JBrowse link
G Nupl2 nucleoporin like 2 ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr 4:7,512,326...7,529,106
Ensembl chr 4:7,512,326...7,529,106
JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase ISO (PMID:22543976) RGD PMID:22543976 NCBI chr  X:134,742,226...134,793,411
Ensembl chr  X:134,742,356...134,792,618
JBrowse link
G Opn1mw opsin 1, medium wave sensitive IDA
ISO
IBA
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608)
PMID:21873635
RGD PMID:10725384, PMID:12651948, PMID:19332056, PMID:23351594, PMID:23386608, PMID:20209167, PMID:21873635 MGI:1354839, MGI:2654998, MGI:4352610, MGI:5488667, MGI:5494796, RGD:6893562, RGD:13792537 NCBI chr  X:156,569,683...156,589,907
Ensembl chr  X:156,569,683...156,589,907
JBrowse link
G Opn1sw opsin 1, short wave sensitive IDA
ISO
IEA
IBA
(MGI:1354839|PMID:10725384), (MGI:1355614|PMID:10813773), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485)
GO_REF:0000044
PMID:21873635
RGD
UniProt
PMID:10725384, PMID:10813773, PMID:12651948, PMID:19332056, PMID:22183407, PMID:23351594, PMID:23386608, PMID:26420485, PMID:20209167, PMID:21873635 GO_REF:0000044, MGI:1354839, MGI:1355614, MGI:2654998, MGI:4352610, MGI:5488667, MGI:5494796, MGI:5587954, MGI:6305433, RGD:6893562, RGD:13792537 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Opn3 opsin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Pcare photoreceptor cilium actin regulator IBA
ISO
PMID:21873635
(MGI:5636574|PMID:25616964)
RGD PMID:25616964, PMID:21873635 MGI:5636574, RGD:13792537 NCBI chr 6:23,337,507...23,346,232
Ensembl chr 6:23,337,571...23,346,173
JBrowse link
G Pcdh15 protocadherin related 15 ISO (PMID:14570705)
(MGI:3722521|PMID:14570705)
RGD PMID:14570705 MGI:3722521 NCBI chr20:14,952,213...15,334,745
Ensembl chr20:14,952,213...15,334,745
JBrowse link
G Pdc phosducin ISO (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr13:67,545,430...67,558,600
Ensembl chr13:67,545,430...67,558,600
JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Pex6 peroxisomal biogenesis factor 6 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:16,568,743...16,580,900
Ensembl chr 9:16,566,688...16,581,078
JBrowse link
G Prcd photoreceptor disc component ISO (MGI:5819338|PMID:23672200) RGD PMID:23672200 MGI:5819338 NCBI chr10:105,630,686...105,642,427
Ensembl chr10:105,630,810...105,631,208
JBrowse link
G Prkca protein kinase C, alpha ISO (MGI:1355614|PMID:10813773) RGD PMID:10813773 MGI:1355614 NCBI chr10:96,186,509...96,585,168
Ensembl chr10:96,191,133...96,584,947
JBrowse link
G Prom1 prominin 1 ISO (MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:3838023 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Prph peripherin ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr 7:140,742,406...140,746,197
Ensembl chr 7:140,742,418...140,746,197
JBrowse link
G Prph2 peripherin 2 ISO (MGI:5587954|PMID:22183407), (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) RGD PMID:22183407, PMID:26420485, PMID:28053051 MGI:5587954, MGI:5905515, MGI:6305433 NCBI chr 9:16,085,933...16,386,176 JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 IEA
ISO
GO_REF:0000107
(MGI:2429331|PMID:12355421)
Ensembl
RGD
PMID:12355421 GO_REF:0000107, MGI:2429331 NCBI chr 3:15,560,685...15,582,339
Ensembl chr 3:15,560,712...15,582,344
JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K ISO (MGI:3794228|PMID:18308476) RGD PMID:18308476 MGI:3794228 NCBI chr 1:17,445,052...18,058,266
Ensembl chr 1:17,446,417...18,058,055
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO (MGI:2180422|PMID:11964381) RGD PMID:11964381 MGI:2180422 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:58,632,338...58,925,127
Ensembl chr 3:58,632,476...58,924,038
JBrowse link
G Rd3 retinal degeneration 3, GUCY2D regulator ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
G Rgr retinal G protein coupled receptor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:14,286,323...14,300,972
Ensembl chr16:14,286,323...14,300,951
JBrowse link
G Rgs9 regulator of G-protein signaling 9 ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr10:97,509,971...97,582,188
Ensembl chr10:97,509,971...97,582,188
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr 1:91,855,270...91,855,983
Ensembl chr 1:91,855,270...91,855,983
JBrowse link
G Rho rhodopsin IDA
ISO
IBA
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:4461813|PMID:20592197), (MGI:4949555|PMID:21444805), (MGI:4950337|PMID:21212183), (MGI:5462139|PMID:22869374), (MGI:5467890|PMID:23178122), (MGI:5488667|PMID:23351594), (MGI:5525015|PMID:23943788), (MGI:5587954|PMID:22183407), (MGI:5607451|PMID:25224828), (MGI:6305433|PMID:26420485)
PMID:21873635
(PMID:11767049), (PMID:23704327)
RGD PMID:10725384, PMID:11767049, PMID:12651948, PMID:19332056, PMID:20592197, PMID:21212183, PMID:21444805, PMID:22183407, PMID:22869374, PMID:23178122, PMID:23351594, PMID:23704327, PMID:23943788, PMID:25224828, PMID:26420485, PMID:8814134, PMID:21873635 MGI:1354839, MGI:2654998, MGI:4352610, MGI:4461813, MGI:4949555, MGI:4950337, MGI:5462139, MGI:5467890, MGI:5488667, MGI:5525015, MGI:5587954, MGI:5607451, MGI:6305433, RGD:6893595, RGD:13792537 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4461813|PMID:20592197), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) RGD PMID:20592197, PMID:22183407, PMID:26420485 MGI:4461813, MGI:5587954, MGI:6305433 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) RGD PMID:14507858, PMID:15269252 MGI:2676521, MGI:3629826 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (PMID:12140192) RGD PMID:12140192 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,237,422...235,250,474
Ensembl chr 2:235,237,414...235,249,575
JBrowse link
G Sag S-antigen visual arrestin IDA
ISO
IBA
IEA
(MGI:5462139|PMID:22869374)
PMID:21873635
(PMID:3720866)
GO_REF:0000107
RGD
Ensembl
PMID:3720866, PMID:22869374, PMID:10396627, PMID:21873635 GO_REF:0000107, MGI:5462139, RGD:6893629, RGD:13792537 NCBI chr 9:94,926,901...94,972,162
Ensembl chr 9:94,928,489...94,972,027
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 ISS
ISO
GO_REF:0000024
(MGI:5306573|PMID:19299912)
BHF-UCL
RGD
PMID:19299912 GO_REF:0000024, MGI:5306573 NCBI chr 1:217,149,156...217,593,950
Ensembl chr 1:217,151,166...217,592,763
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:4397555 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
G Ush1c USH1 protein network component harmonin IDA
ISO
(MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) RGD PMID:14578428, PMID:17906286, PMID:14578428 MGI:2679149, MGI:3774983, RGD:1303964 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Vcan versican IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:18,490,102...18,587,340
Ensembl chr 2:18,490,102...18,565,842
JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1A ISO (PMID:9620085)
(MGI:6437034|PMID:9620085)
RGD PMID:9620085 MGI:6437034 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO (PMID:9620085) RGD PMID:9620085 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
G Rd3 retinal degeneration 3, GUCY2D regulator ISO (MGI:4867355|PMID:21078983) RGD PMID:21078983 MGI:4867355 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:65,882,063...65,917,424
Ensembl chr 9:65,882,054...65,917,132
JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:25664179)
Ensembl
UniProt
RGD
PMID:25664179 GO_REF:0000024, GO_REF:0000107 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:111,833,411...111,875,551 JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin-related family member 1 ISO (MGI:3814988|PMID:18654668) RGD PMID:18654668 MGI:3814988 NCBI chr16:14,328,161...14,348,049
Ensembl chr16:14,328,160...14,348,046
JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 IEA
ISO
GO_REF:0000107
(MGI:3814988|PMID:18654668)
Ensembl
RGD
PMID:18654668 GO_REF:0000107, MGI:3814988 NCBI chr14:38,155,771...38,171,107
Ensembl chr14:38,155,759...38,171,010
JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:172,914,025...172,981,403
Ensembl chr 5:172,934,990...172,979,986
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal IDA
ISO
IEA
PMID:9153227
(MGI:5049799|PMID:21598940)
GO_REF:0000107
RGD
Ensembl
PMID:21598940, PMID:9153227 GO_REF:0000107, MGI:5049799, RGD:1599625 NCBI chr10:55,835,695...55,851,235
Ensembl chr10:55,835,695...55,851,235
JBrowse link
G Pde6a phosphodiesterase 6A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:56,544,652...56,617,480
Ensembl chr18:56,544,652...56,617,480
JBrowse link
G Pde6b phosphodiesterase 6B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Pde6g phosphodiesterase 6G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:109,620,499...109,625,214
Ensembl chr10:109,620,980...109,622,745
JBrowse link
G Pde6h phosphodiesterase 6H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,947,723...170,963,046
Ensembl chr 4:170,958,196...170,963,046
JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:41,731,845...41,798,451
Ensembl chr19:41,731,646...41,798,383
JBrowse link
G Prcd photoreceptor disc component ISO
IEA
(PMID:27613864)
(MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)
GO_REF:0000107
RGD
Ensembl
PMID:27509380, PMID:27613864 GO_REF:0000107, MGI:5812604, MGI:6271388 NCBI chr10:105,630,686...105,642,427
Ensembl chr10:105,630,810...105,631,208
JBrowse link
G Prom1 prominin 1 ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Prph peripherin ISO (MGI:1343017|PMID:10414956) RGD PMID:10414956 MGI:1343017 NCBI chr 7:140,742,406...140,746,197
Ensembl chr 7:140,742,418...140,746,197
JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT ISO (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rho rhodopsin IDA
ISS
ISO
IEA
GO_REF:0000024
(PMID:19934218)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19934218, PMID:2209754 GO_REF:0000024, GO_REF:0000107, RGD:6893561 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:3814988|PMID:18654668) RGD PMID:18654668 MGI:3814988 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 ISO (PMID:26373354) RGD PMID:26373354 NCBI chr13:90,605,792...90,642,032
Ensembl chr13:90,605,794...90,641,772
JBrowse link
G Cep290 centrosomal protein 290 ISO MGI:2144877 (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Gucy2f guanylate cyclase 2F ISS
ISO
GO_REF:0000024
(MGI:4867355|PMID:21078983)
UniProt
RGD
PMID:21078983 GO_REF:0000024, MGI:4867355 NCBI chr  X:113,372,240...113,474,210
Ensembl chr  X:113,372,240...113,474,164
JBrowse link
G Rd3 retinal degeneration 3, GUCY2D regulator ISO (MGI:4867355|PMID:21078983) RGD PMID:21078983 MGI:4867355 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
G Spata7 spermatogenesis associated 7 IEA
ISO
IBA
GO_REF:0000107
MGI:2384917|MGI:5660490 (MGI:6194004|PMID:29899041)
PMID:21873635
Ensembl
RGD
PMID:29899041, PMID:21873635 GO_REF:0000107, MGI:6194004, RGD:13792537 NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:65,882,063...65,917,424
Ensembl chr 9:65,882,054...65,917,132
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      photoreceptor outer segment 87
        cone photoreceptor outer segment 4
        photoreceptor disc membrane + 2
        photoreceptor outer segment membrane 15
        rod photoreceptor outer segment + 6
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      cell projection 2550
        plasma membrane bounded cell projection 2479
          cilium 686
            non-motile cilium 171
              9+0 non-motile cilium 131
                photoreceptor cell cilium 118
                  photoreceptor outer segment 87
                    cone photoreceptor outer segment 4
                    photoreceptor disc membrane + 2
                    photoreceptor outer segment membrane 15
                    rod photoreceptor outer segment + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.