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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor outer segment
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Accession:GO:0001750 term browser browse the term
Definition:The outer segment of a vertebrate photoreceptor that contains a stack of membrane discs embedded with photoreceptor proteins.



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photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 located_in ISO (MGI:1274766|PMID:9202155), (MGI:5525015|PMID:23943788) RGD PMID:9202155 PMID:23943788 MGI:1274766 MGI:5525015 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Ahi1 Abelson helper integration site 1 located_in ISO (MGI:4461813|PMID:20592197) RGD PMID:20592197 MGI:4461813 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Arr3 arrestin 3 located_in IEA
ISO
GO_REF:0000044
(MGI:1354839|PMID:10725384), (MGI:3616100|PMID:12486395)
UniProt
RGD
PMID:10725384 PMID:12486395 GO_REF:0000044 MGI:1354839 MGI:3616100 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396
JBrowse link
G Bsg basigin (Ok blood group) located_in ISS
ISO
GO_REF:0000024
(MGI:6436439|PMID:25957687)
UniProt
RGD
PMID:25957687 GO_REF:0000024 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F IDA RGD PMID:11526344 RGD:632484 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413
JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (MGI:6254746|PMID:28005958) RGD PMID:28005958 MGI:6254746 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125
JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Cerkl ceramide kinase-like located_in ISO (MGI:5571037|PMID:23142158) RGD PMID:23142158 MGI:5571037 NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675
JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) RGD PMID:27548899 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737
JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5487486|PMID:23023331)
UniProt
RGD
PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (MGI:1354839|PMID:10725384), (MGI:3527312|PMID:15634774), (MGI:4461813|PMID:20592197) RGD PMID:10725384 PMID:15634774 PMID:20592197 MGI:1354839 MGI:3527312 MGI:4461813 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (MGI:1355614|PMID:10813773), (MGI:3527312|PMID:15634774) RGD PMID:10813773 PMID:15634774 MGI:1355614 MGI:3527312 NCBI chr 9:39,447,532...39,497,883
Ensembl chr 9:39,448,034...39,493,183
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 located_in ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 located_in ISO (MGI:3527312|PMID:15634774) RGD PMID:15634774 MGI:3527312 NCBI chr 5:32,746,988...32,995,121
Ensembl chr 5:32,746,988...32,995,121
JBrowse link
G Crb1 crumbs cell polarity complex component 1 located_in ISO
IEA
(MGI:3051713|PMID:15316081)
GO_REF:0000107
RGD
Ensembl
PMID:15316081 GO_REF:0000107 MGI:3051713 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO
(MGI:3778702|PMID:18367617), (MGI:4461813|PMID:20592197), (MGI:6383261|PMID:31696965)
(PMID:2534964)
RGD PMID:2534964 PMID:18367617 PMID:20592197 PMID:31696965 PMID:11931744 More... MGI:3778702 MGI:4461813 MGI:6383261, RGD:1599009, RGD:6893629 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:2534964)
RGD PMID:2534964 PMID:17591908 PMID:21873635 RGD:2302146, RGD:13792537 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283
JBrowse link
G Gnb1 G protein subunit beta 1 located_in ISO (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
JBrowse link
G Gnb5 G protein subunit beta 5 located_in ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr 8:76,076,227...76,104,151
Ensembl chr 8:76,073,306...76,105,069
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 PMID:10396627 RGD:1599009, RGD:6893629 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 located_in ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IDA
ISO
(MGI:5587954|PMID:22183407) RGD PMID:22183407 PMID:9620085 MGI:5587954, RGD:1599354 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Guca1b guanylate cyclase activator 1B IDA RGD PMID:9620085 RGD:1599354 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Guca2b guanylate cyclase activator 2B located_in ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr 5:133,246,891...133,248,941
Ensembl chr 5:133,246,909...133,248,966
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO (PMID:7912093) RGD PMID:7912093 NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067
JBrowse link
G Hnf1a HNF1 homeobox A located_in ISO MGI:96770 (MGI:1334099|PMID:10090727) RGD PMID:10090727 MGI:1334099 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (MGI:5604762|PMID:24619649) RGD PMID:24619649 MGI:5604762 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722
JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:76,994,465...76,997,366
Ensembl chr 9:76,993,589...76,997,248
JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (MGI:3763297|PMID:15723066) RGD PMID:15723066 MGI:3763297 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
JBrowse link
G Lyar Ly1 antibody reactive located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:6107438|PMID:25735755)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25735755 GO_REF:0000024 GO_REF:0000107 MGI:6107438 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612
JBrowse link
G Mak male germ cell-associated kinase located_in ISS
ISO
GO_REF:0000024
(MGI:5298333|PMID:21148103)
UniProt
RGD
PMID:21148103 GO_REF:0000024 MGI:5298333 NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001
JBrowse link
G Map1a microtubule-associated protein 1A located_in ISO (MGI:5587952|PMID:24664738) RGD PMID:24664738 MGI:5587952 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
JBrowse link
G Map1b microtubule-associated protein 1B located_in ISO (MGI:5587952|PMID:24664738) RGD PMID:24664738 MGI:5587952 NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase IDA RGD PMID:11861639 RGD:1299193 NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554
JBrowse link
G Myo3b myosin IIIB located_in ISO (MGI:4352610|PMID:19332056) RGD PMID:19332056 MGI:4352610 NCBI chr 3:54,873,704...55,226,189
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Myo5a myosin VA located_in ISO (MGI:3047015|PMID:14978221) RGD PMID:14978221 MGI:3047015 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in
ISS
ISO
IDA
GO_REF:0000024
(MGI:81971|PMID:8842737)
(PMID:8842737)
UniProt
RGD
PMID:8842737 PMID:8842737 GO_REF:0000024 MGI:81971, RGD:8553559 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Myrip myosin VIIA and Rab interacting protein located_in IEA
ISO
GO_REF:0000107
(MGI:2180422|PMID:11964381)
Ensembl
RGD
PMID:11964381 GO_REF:0000107 MGI:2180422 NCBI chr 8:120,017,843...120,184,821
Ensembl chr 8:120,017,524...120,183,833
JBrowse link
G Nupl2 nucleoporin like 2 located_in ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr 4:10,985,554...11,002,591
Ensembl chr 4:10,985,554...11,002,591
JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) RGD PMID:22543976 NCBI chr  X:127,089,508...127,140,362
Ensembl chr  X:127,089,590...127,140,362
JBrowse link
G Opn1mw opsin 1, medium wave sensitive is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608)
RGD PMID:10725384 PMID:12651948 PMID:19332056 PMID:23351594 PMID:23386608 More... MGI:1354839 MGI:2654998 MGI:4352610 MGI:5488667 MGI:5494796, RGD:6893562, RGD:13792537 NCBI chr  X:151,905,096...151,925,322
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive is_active_in
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:1354839|PMID:10725384), (MGI:1355614|PMID:10813773), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485)
GO_REF:0000107
RGD
Ensembl
PMID:10725384 PMID:10813773 PMID:12651948 PMID:19332056 PMID:22183407 More... GO_REF:0000107 MGI:1354839 MGI:1355614 MGI:2654998 MGI:4352610 MGI:5488667 MGI:5494796 MGI:5587954 MGI:6305433, RGD:6893562, RGD:13792537 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Pcare photoreceptor cilium actin regulator located_in
is_active_in
ISO
IBA
(MGI:5636574|PMID:25616964)
PMID:21873635
RGD PMID:25616964 PMID:21873635 MGI:5636574, RGD:13792537 NCBI chr 6:23,749,700...23,758,419
Ensembl chr 6:23,749,757...23,758,169
JBrowse link
G Pcdh15 protocadherin related 15 located_in ISO (PMID:14570705)
(MGI:3722521|PMID:14570705)
RGD PMID:14570705 MGI:3722521 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pdc phosducin located_in ISO (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754
JBrowse link
G Pde6b phosphodiesterase 6B located_in ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,258,145...14,270,335
Ensembl chr 9:14,258,145...14,270,303
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:81,496,669...81,668,180 JBrowse link
G Prcd photoreceptor disc component located_in ISO (MGI:5819338|PMID:23672200) RGD PMID:23672200 MGI:5819338 NCBI chr10:101,887,192...101,907,647 JBrowse link
G Prkca protein kinase C, alpha located_in ISO (MGI:1355614|PMID:10813773) RGD PMID:10813773 MGI:1355614 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
JBrowse link
G Prom1 prominin 1 located_in ISO (MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:3838023 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Prph peripherin located_in ISO (MGI:5587954|PMID:22183407) RGD PMID:22183407 MGI:5587954 NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136
JBrowse link
G Prph2 peripherin 2 located_in ISO (MGI:5587954|PMID:22183407), (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) RGD PMID:22183407 PMID:26420485 PMID:28053051 MGI:5587954 MGI:5905515 MGI:6305433 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 located_in IEA
ISO
GO_REF:0000107
(MGI:2429331|PMID:12355421)
Ensembl
RGD
PMID:12355421 GO_REF:0000107 MGI:2429331 NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K located_in ISO (MGI:3794228|PMID:18308476) RGD PMID:18308476 MGI:3794228 NCBI chr 1:16,738,896...17,236,687
Ensembl chr 1:16,850,576...17,103,605
JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in ISO (MGI:2180422|PMID:11964381) RGD PMID:11964381 MGI:2180422 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:56,809,388...57,101,332
Ensembl chr 3:56,809,270...57,102,316
JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
JBrowse link
G Rgr retinal G protein coupled receptor is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rgs9 regulator of G-protein signaling 9 located_in ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein located_in
is_active_in
ISO
IBA
(MGI:5507748|PMID:23555598)
PMID:21873635
RGD PMID:23555598 PMID:21873635 MGI:5507748, RGD:13792537 NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151
JBrowse link
G Rho rhodopsin located_in
is_active_in
IDA
ISO
IBA
(PMID:11767049), (PMID:23704327)
PMID:21873635
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:4461813|PMID:20592197), (MGI:4949555|PMID:21444805), (MGI:4950337|PMID:21212183), (MGI:5462139|PMID:22869374), (MGI:5467890|PMID:23178122), (MGI:5488667|PMID:23351594), (MGI:5525015|PMID:23943788), (MGI:5587954|PMID:22183407), (MGI:5607451|PMID:25224828), (MGI:6305433|PMID:26420485)
RGD PMID:10725384 PMID:11767049 PMID:12651948 PMID:19332056 PMID:20592197 More... MGI:1354839 MGI:2654998 MGI:4352610 MGI:4461813 MGI:4949555 MGI:4950337 MGI:5462139 MGI:5467890 MGI:5488667 MGI:5525015 MGI:5587954 MGI:5607451 MGI:6305433, RGD:6893595, RGD:13792537 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (MGI:4461813|PMID:20592197), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) RGD PMID:20592197 PMID:22183407 PMID:26420485 MGI:4461813 MGI:5587954 MGI:6305433 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) RGD PMID:14507858 PMID:15269252 MGI:2676521 MGI:3629826 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:38,259,595...38,271,269
Ensembl chr15:38,259,928...38,270,316
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) RGD PMID:12140192 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:218,362,195...218,375,202
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
G Sag S-antigen visual arrestin is_active_in
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:5462139|PMID:22869374)
GO_REF:0000107
(PMID:3720866)
RGD
Ensembl
PMID:3720866 PMID:22869374 PMID:10396627 PMID:21873635 GO_REF:0000107 MGI:5462139, RGD:6893629, RGD:13792537 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in
part_of
ISS
ISO
GO_REF:0000024
(MGI:5306573|PMID:19299912)
BHF-UCL
RGD
PMID:19299912 GO_REF:0000024 MGI:5306573 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394
JBrowse link
G Tmem30a transmembrane protein 30A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,728,749...80,757,197
Ensembl chr 8:80,729,619...80,753,248
JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:4397555 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Ush1c USH1 protein network component harmonin located_in IDA
ISO
(MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) RGD PMID:14578428 PMID:17906286 PMID:14578428 MGI:2679149 MGI:3774983, RGD:1303964 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Vcan versican located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637
JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1A located_in ISO (PMID:9620085)
(MGI:6437034|PMID:9620085)
RGD PMID:9620085 MGI:6437034 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:9620085) RGD PMID:9620085 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983) RGD PMID:21078983 MGI:4867355 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
JBrowse link
G Slc24a4 solute carrier family 24 member 4 located_in IEA
ISO
GO_REF:0000107
(MGI:6116933|PMID:28650316)
Ensembl
RGD
PMID:28650316 GO_REF:0000107 MGI:6116933 NCBI chr 6:121,278,746...121,419,811
Ensembl chr 6:121,280,031...121,414,949
JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25664179)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25664179 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:107,013,783...107,054,878 JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin-related family member 1 located_in ISO (MGI:3814988|PMID:18654668) RGD PMID:18654668 MGI:3814988 NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396
JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3814988|PMID:18654668)
Ensembl
RGD
PMID:18654668 GO_REF:0000107 MGI:3814988 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in IEA
ISO
IDA
GO_REF:0000107
(MGI:5049799|PMID:21598940)
PMID:9153227
Ensembl
RGD
PMID:21598940 PMID:9153227 GO_REF:0000107 MGI:5049799, RGD:1599625 NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067
JBrowse link
G Pde6a phosphodiesterase 6A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:54,676,863...54,749,644
Ensembl chr18:54,676,863...54,748,816
JBrowse link
G Pde6b phosphodiesterase 6B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Pde6g phosphodiesterase 6G is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:105,721,502...105,727,204 JBrowse link
G Pde6h phosphodiesterase 6H is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:169,857,793...169,872,969
Ensembl chr 4:169,857,812...169,872,969
JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513
JBrowse link
G Prcd photoreceptor disc component located_in ISO
IEA
(PMID:27613864)
(MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)
GO_REF:0000107
RGD
Ensembl
PMID:27509380 PMID:27613864 GO_REF:0000107 MGI:5812604 MGI:6271388 NCBI chr10:101,887,192...101,907,647 JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Prph peripherin located_in ISO (MGI:1343017|PMID:10414956) RGD PMID:10414956 MGI:1343017 NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136
JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT|located_in ISO (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rho rhodopsin located_in IDA
IEA
ISO
ISS
GO_REF:0000107
(PMID:19934218)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19934218 PMID:2209754 GO_REF:0000024 GO_REF:0000107, RGD:6893561 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (MGI:3814988|PMID:18654668) RGD PMID:18654668 MGI:3814988 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) RGD PMID:26373354 NCBI chr13:84,683,766...84,719,790
Ensembl chr13:84,683,768...84,719,687
JBrowse link
G Cep290 centrosomal protein 290 is_active_in ISO MGI:2144877 (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Gucy2f guanylate cyclase 2F located_in ISS
ISO
GO_REF:0000024
(MGI:4867355|PMID:21078983)
UniProt
RGD
PMID:21078983 GO_REF:0000024 MGI:4867355 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183
JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983) RGD PMID:21078983 MGI:4867355 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
JBrowse link
G Spata7 spermatogenesis associated 7 is_active_in
located_in
IBA
ISO
IEA
PMID:21873635
MGI:2384917|MGI:5660490 (MGI:6194004|PMID:29899041)
GO_REF:0000107
RGD
Ensembl
PMID:29899041 PMID:21873635 GO_REF:0000107 MGI:6194004, RGD:13792537 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      photoreceptor outer segment 91
        cone photoreceptor outer segment 5
        photoreceptor disc membrane + 2
        photoreceptor outer segment membrane 15
        rod photoreceptor outer segment + 6
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      organelle 13088
        membrane-bounded organelle 11697
          cilium 722
            non-motile cilium 178
              9+0 non-motile cilium 138
                photoreceptor cell cilium 124
                  photoreceptor outer segment 91
                    cone photoreceptor outer segment 5
                    photoreceptor disc membrane + 2
                    photoreceptor outer segment membrane 15
                    rod photoreceptor outer segment + 6
paths to the root