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ONTOLOGY REPORT - ANNOTATIONS

Term:mesoderm formation
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Accession:GO:0001707 term browser browse the term
Definition:The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.


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mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17117439)
(PMID:10479450)		 Ensembl
MGI		 PMID:10479450 PMID:17117439 GO_REF:0000107 NCBI chr15:64,749,478...64,891,653
Ensembl chr15:64,750,796...64,891,544 		JBrowse link
G AHDC1 AT-hook DNA binding motif containing 1 involved_in ISO (PMID:35585237)
(MGI:7294317|PMID:35585237)		 UniProt PMID:35585237 MGI:7294317 NCBI chr 6:84,735,253...84,774,554 JBrowse link
G ARMC5 armadillo repeat containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28911199) Ensembl
MGI		 PMID:28911199 GO_REF:0000107 NCBI chr 3:17,100,612...17,108,523
Ensembl chr 3:17,100,618...17,109,054 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699), (PMID:7799920) Ensembl
MGI		 PMID:7799920 PMID:18462699 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843411) Ensembl
MGI		 PMID:15843411 GO_REF:0000107 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,956...57,675,986 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17699604) Ensembl
MGI		 PMID:17699604 GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10772805) Ensembl
MGI		 PMID:10772805 GO_REF:0000107 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,428...106,135,730 		JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (PMID:12810603) MGI PMID:12810603 NCBI chr13:122,266,632...122,277,513
Ensembl chr13:122,266,626...122,277,645 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA		 CAFA
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,987...264,301,713 		JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,288 		JBrowse link
G ECSIT ECSIT signaling integrator acts_upstream_of_or_within ISO (PMID:14633973) MGI PMID:14633973 NCBI chr 2:70,154,861...70,170,762
Ensembl chr 2:70,154,843...70,170,744 		JBrowse link
G EOMES eomesodermin involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:10716450) GO_Central
MGI		 PMID:10716450 GO_REF:0000033 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,209,736...14,215,797 		JBrowse link
G ETV2 ETS variant transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699) Ensembl
MGI		 PMID:18462699 GO_REF:0000107 NCBI chr 6:45,085,984...45,089,592
Ensembl chr 6:45,087,100...45,089,626 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO (PMID:16236767) MGI PMID:16236767 NCBI chr 2:18,099,790...18,239,229
Ensembl chr 2:18,209,102...18,232,025 		JBrowse link
G GPI glucose-6-phosphate isomerase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8922529) Ensembl
MGI		 PMID:8922529 GO_REF:0000107 NCBI chr 6:44,038,374...44,069,331
Ensembl chr 6:44,038,357...44,069,328 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500550) Ensembl
MGI		 PMID:9500550 GO_REF:0000107 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342 		JBrowse link
G INHBA inhibin subunit beta A acts_upstream_of_or_within ISO (PMID:7799920) MGI PMID:7799920 NCBI chr12:53,115,379...53,117,128
NCBI chr18:52,889,684...52,909,260
Ensembl chr18:52,889,684...52,900,967 		JBrowse link
G MACF1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (PMID:16815997) MGI PMID:16815997 NCBI chr 6:94,960,385...95,318,126
Ensembl chr 6:95,153,005...95,301,618 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,274...55,323,539 		JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,342,935...55,345,879 		JBrowse link
G MSGN1 mesogenin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:120,033,980...120,034,624
Ensembl chr 3:120,034,043...120,034,624 		JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9171370) Ensembl
MGI		 PMID:9171370 GO_REF:0000107 NCBI chr14:46,653,869...46,726,421
Ensembl chr14:46,653,900...46,731,999 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699) Ensembl
MGI		 PMID:18462699 GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206 		JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:13129926) MGI PMID:13129926 NCBI chr 1:241,569,867...241,611,735
Ensembl chr 1:241,570,010...241,611,727 		JBrowse link
G POFUT2 protein O-fucosyltransferase 2 acts_upstream_of_or_within ISO (PMID:20637190) MGI PMID:20637190 NCBI chr13:207,801,101...207,818,138 JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004056) Ensembl
MGI		 PMID:12004056 GO_REF:0000107 NCBI chr 2:65,074,876...65,095,564
Ensembl chr 2:65,074,870...65,095,551 		JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004056) Ensembl
MGI		 PMID:12004056 GO_REF:0000107 NCBI chr12:11,662,344...11,681,490
Ensembl chr12:11,662,347...11,681,373 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299)
(PMID:10477299)		 UniProt PMID:10477299 MGI:1343990 NCBI chr 4:500,884...503,276
Ensembl chr 4:500,526...503,193 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084457) Ensembl
MGI		 PMID:15084457 GO_REF:0000107 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,357 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084457) Ensembl
MGI		 PMID:15084457 GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,103...165,124,449 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:51,546,446...51,552,498
Ensembl chr17:51,546,477...51,552,499 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11060034), (PMID:9799237) Ensembl
MGI		 PMID:9799237 PMID:11060034 GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,487...38,222,144 		JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:82,663,121...82,699,261
Ensembl chr 4:82,663,581...82,697,813 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804)
(PMID:9490412)		 Ensembl
MGI		 PMID:9490412 PMID:15755804 GO_REF:0000107 NCBI chr 3:18,271,983...18,277,864
Ensembl chr 3:18,271,983...18,277,580 		JBrowse link
G TBXT T-box transcription factor T involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,725,601 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in TAS (PMID:8133057) UniProt PMID:8133057 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341 		JBrowse link
G TLX2 T cell leukemia homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9550720) Ensembl
MGI		 PMID:9550720 GO_REF:0000107 NCBI chr 3:68,532,111...68,537,385
Ensembl chr 3:68,531,962...68,534,543 		JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843411) Ensembl
MGI		 PMID:15843411 GO_REF:0000107 NCBI chr 6:98,629,116...98,678,322
Ensembl chr 6:98,625,505...98,678,258 		JBrowse link
G TXNRD1 thioredoxin reductase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17697936) Ensembl
MGI		 PMID:17697936 GO_REF:0000107 NCBI chr 5:80,170,334...80,213,889
Ensembl chr 5:80,172,260...80,236,219 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259)
(PMID:19841259)		 UniProt PMID:19841259 MGI:4397730 NCBI chr 6:144,242,639...144,529,659
Ensembl chr 6:144,399,926...144,555,880 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997 		JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14511481) Ensembl
MGI		 PMID:14511481 GO_REF:0000107 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19182774)
(PMID:15677567), (PMID:18550854)		 Ensembl
MGI		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 NCBI chr 6:164,282,242...164,297,636
Ensembl chr 6:164,283,366...164,295,290 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124112) Ensembl
MGI		 PMID:11124112 GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,223...31,295,893 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7720590) Ensembl
MGI		 PMID:7720590 GO_REF:0000107 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,725,601 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G INHBA inhibin subunit beta A acts_upstream_of_or_within ISO (PMID:7799920) MGI PMID:7799920 NCBI chr12:53,115,379...53,117,128
NCBI chr18:52,889,684...52,909,260
Ensembl chr18:52,889,684...52,900,967 		JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:32,336,240...32,440,311
Ensembl chr16:32,336,292...32,437,103 		JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:26,234,769...26,269,327
Ensembl chr12:26,235,258...26,269,324 		JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:46,132,887...46,303,659
Ensembl chr10:46,132,913...46,303,343 		JBrowse link
G ITGB1 integrin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,396...56,173,326 		JBrowse link
G ITGB3 integrin subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:16,694,466...16,752,228
Ensembl chr12:16,693,514...16,752,292 		JBrowse link
G ITGB4 integrin subunit beta 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,651,292...5,685,601
Ensembl chr12:5,651,292...5,685,611 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,814...40,154,029 		JBrowse link
G KDM6B lysine demethylase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:53,087,072...53,108,949
Ensembl chr12:53,098,964...53,108,214 		JBrowse link
G LOC100359361 high mobility group AT-hook 2-like involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G MIR145 microRNA mir-145 involved_in ISO (PMID:19409607) BHF-UCL PMID:19409607 NCBI chr 2:150,580,126...150,580,211
Ensembl chr 2:150,580,126...150,580,211 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NANOG Nanog homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801560) Ensembl
MGI		 PMID:16801560 GO_REF:0000107 NCBI chr 5:62,931,642...62,939,086
Ensembl chr 5:62,932,382...62,939,082 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801560) Ensembl
MGI		 PMID:16801560 GO_REF:0000107 NCBI chr 8:82,907,557...82,987,909
Ensembl chr 8:82,908,527...82,968,994 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7657163) Ensembl
MGI		 PMID:7657163 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,807...64,328,105 		JBrowse link
G HOXA11 homeobox A11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,823,308...111,913,969 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17462603) Ensembl
MGI		 PMID:17462603 GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,945...95,463,251 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9490412) Ensembl
MGI		 PMID:9490412 GO_REF:0000107 NCBI chr 3:18,271,983...18,277,864
Ensembl chr 3:18,271,983...18,277,580 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,288 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,274...55,323,539 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17462603) Ensembl
MGI		 PMID:17462603 GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOC4 exocyst complex component 4 acts_upstream_of_or_within ISO (PMID:9441674) MGI PMID:9441674 NCBI chr18:15,105,152...15,906,734
Ensembl chr18:15,105,138...15,906,707 		JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11562355) Ensembl
MGI		 PMID:11562355 GO_REF:0000107 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805 		JBrowse link
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11562355) Ensembl
MGI		 PMID:11562355 GO_REF:0000107 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367 		JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10090727) Ensembl
MGI		 PMID:10090727 GO_REF:0000107 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10090727) Ensembl
MGI		 PMID:10090727 GO_REF:0000107 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,825,161...113,944,070 		JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr 9:10,413,182...10,435,158
Ensembl chr 9:10,413,263...10,435,100 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9106663) Ensembl
MGI		 PMID:9106663 GO_REF:0000107 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9126297) Ensembl
MGI		 PMID:9126297 GO_REF:0000107 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,153,970...51,202,176 		JBrowse link
positive regulation of mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR1 microRNA mir-1 involved_in ISO (PMID:23939491) BHF-UCL PMID:23939491 NCBI chr17:61,894,036...61,894,143
Ensembl chr17:61,894,036...61,894,143 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,528...41,002,156 		JBrowse link
G MIR150-1 microRNA mir-150-1 involved_in ISO (PMID:23765923) BHF-UCL PMID:23765923 NCBI chr 6:54,580,912...54,580,988
Ensembl chr 6:54,580,912...54,580,988 		JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,153,970...51,202,176 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17652
    developmental process 6661
      anatomical structure formation involved in morphogenesis 1327
        formation of primary germ layer 138
          mesoderm formation 81
            axial mesoderm formation + 3
            intermediate mesoderm formation + 1
            lateral mesoderm formation + 4
            mesoderm migration involved in gastrulation 2
            mesodermal cell differentiation + 35
            negative regulation of mesoderm formation 0
            paraxial mesoderm formation + 9
            positive regulation of mesoderm formation 1
            regulation of mesoderm formation + 1
Path 2
Term Annotations click to browse term
  biological_process 17652
    developmental process 6661
      anatomical structure development 6267
        multicellular organism development 5061
          embryo development 1327
            embryonic morphogenesis 687
              gastrulation 209
                formation of primary germ layer 138
                  mesoderm formation 81
                    axial mesoderm formation + 3
                    intermediate mesoderm formation + 1
                    lateral mesoderm formation + 4
                    mesoderm migration involved in gastrulation 2
                    mesodermal cell differentiation + 35
                    negative regulation of mesoderm formation 0
                    paraxial mesoderm formation + 9
                    positive regulation of mesoderm formation 1
                    regulation of mesoderm formation + 1
paths to the root