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ONTOLOGY REPORT - ANNOTATIONS


Term:mesoderm formation
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Accession:GO:0001707 term browser browse the term
Definition:The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.



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mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345529|PMID:10479450)
(MGI:3695845|PMID:17117439)
Ensembl
Ensembl
MGI
PMID:10479450 PMID:17117439 GO_REF:0000107 MGI:1345529 MGI:3695845 NCBI chr15:64,749,478...64,891,653
Ensembl chr15:64,748,761...64,892,153
JBrowse link
G ARMC5 armadillo repeat containing 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913685|PMID:28911199) Ensembl
Ensembl
MGI
PMID:28911199 GO_REF:0000107 MGI:5913685 NCBI chr 3:17,100,612...17,108,523
Ensembl chr 3:17,100,624...17,108,365
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4415813|PMID:18462699), (MGI:70235|PMID:7799920) MGI
Ensembl
PMID:7799920 PMID:18462699 GO_REF:0000107 MGI:4415813 MGI:70235 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578079|PMID:15843411) Ensembl
Ensembl
MGI
PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,091...57,676,944
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3722226|PMID:17699604) Ensembl
Ensembl
MGI
PMID:17699604 GO_REF:0000107 MGI:3722226 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1855789|PMID:10772805) Ensembl
Ensembl
MGI
PMID:10772805 GO_REF:0000107 MGI:1855789 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,427...106,135,730
JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr13:122,266,632...122,277,513
Ensembl chr13:122,266,615...122,277,509
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA
UniProt
Ensembl
CAFA
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:264,277,549...264,301,731
Ensembl chr 1:264,276,572...264,301,725
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,450
JBrowse link
G ECSIT ECSIT signaling integrator acts_upstream_of_or_within ISO (MGI:2682456|PMID:14633973) MGI PMID:14633973 MGI:2682456 NCBI chr 2:70,154,861...70,170,762
Ensembl chr 2:70,136,778...70,170,696
JBrowse link
G EOMES eomesodermin involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1354065|PMID:10716450)
GO_Central
GO_Central
MGI
PMID:10716450 PMID:21873635 MGI:1354065 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,210,083...14,215,797
JBrowse link
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4415813|PMID:18462699) MGI
Ensembl
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr 6:45,085,984...45,089,592
Ensembl chr 6:45,088,171...45,089,595
JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608483|PMID:16236767) Ensembl
Ensembl
MGI
PMID:16236767 GO_REF:0000107 MGI:3608483 NCBI chr 2:18,099,790...18,239,229
Ensembl chr 2:18,100,379...18,232,025
JBrowse link
G GPI glucose-6-phosphate isomerase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:84014|PMID:8922529) Ensembl
Ensembl
MGI
PMID:8922529 GO_REF:0000107 MGI:84014 NCBI chr 6:44,038,374...44,069,331
Ensembl chr 6:43,933,759...44,069,330
JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1197801|PMID:9500550) Ensembl
Ensembl
MGI
PMID:9500550 GO_REF:0000107 MGI:1197801 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342
JBrowse link
G INHBA inhibin subunit beta A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:70235|PMID:7799920) MGI
Ensembl
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr12:53,115,379...53,117,128
NCBI chr18:52,889,684...52,909,260
Ensembl chr18:52,889,684...52,900,967
JBrowse link
G MACF1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (MGI:3640889|PMID:16815997) MGI PMID:16815997 MGI:3640889 NCBI chr 6:94,960,385...95,318,126
Ensembl chr 6:94,960,457...95,317,145
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,010...55,325,732
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:55,341,941...55,345,824
Ensembl chr 7:55,343,134...55,345,904
JBrowse link
G MSGN1 mesogenin 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:120,033,980...120,034,624
Ensembl chr 3:120,034,043...120,034,624
JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:707944|PMID:9171370) Ensembl
Ensembl
MGI
PMID:9171370 GO_REF:0000107 MGI:707944 NCBI chr14:46,653,869...46,726,421
Ensembl chr14:46,653,902...46,731,999
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155575|PMID:11311163) MGI
Ensembl
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4415813|PMID:18462699) Ensembl
Ensembl
MGI
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (MGI:3042044|PMID:13129926) MGI PMID:13129926 MGI:3042044 NCBI chr 1:241,569,867...241,611,735
Ensembl chr 1:241,569,905...241,611,734
JBrowse link
G POFUT2 protein O-fucosyltransferase 2 acts_upstream_of_or_within ISO (MGI:4838381|PMID:20637190) MGI PMID:20637190 MGI:4838381 NCBI chr13:207,801,101...207,818,138 JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2183097|PMID:12004056) Ensembl
Ensembl
MGI
PMID:12004056 GO_REF:0000107 MGI:2183097 NCBI chr 2:65,074,876...65,095,564
Ensembl chr 2:65,074,870...65,095,553
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2183097|PMID:12004056) Ensembl
Ensembl
MGI
PMID:12004056 GO_REF:0000107 MGI:2183097 NCBI chr12:11,662,344...11,681,490
Ensembl chr12:11,662,347...11,681,202
JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) UniProt PMID:10477299 MGI:1343990 NCBI chr 4:500,884...503,276
Ensembl chr 4:501,172...502,994
JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3039049|PMID:15084457) Ensembl
Ensembl
MGI
PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chr 1:97,415,360...97,511,388
Ensembl chr 1:97,415,716...97,511,358
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3039049|PMID:15084457) Ensembl
Ensembl
MGI
PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,083...165,124,454
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:51,546,446...51,552,498
Ensembl chr17:51,546,393...51,552,504
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1312998|PMID:9799237), (MGI:1927031|PMID:11060034) Ensembl
Ensembl
MGI
PMID:9799237 PMID:11060034 GO_REF:0000107 MGI:1312998 MGI:1927031 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,063...38,222,140
JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:82,663,121...82,699,261
Ensembl chr 4:82,663,581...82,697,813
JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2447720|PMID:9490412)
(MGI:3577662|PMID:15755804)
Ensembl
Ensembl
MGI
PMID:9490412 PMID:15755804 GO_REF:0000107 MGI:2447720 MGI:3577662 NCBI chr 3:18,271,983...18,277,864
Ensembl chr 3:18,271,984...18,277,573
JBrowse link
G TBXT T-box transcription factor T involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,724,976
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in TAS (PMID:8133057) UniProt
UniProt
PMID:8133057 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,424...8,405,771
JBrowse link
G TLX2 T cell leukemia homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1267265|PMID:9550720) Ensembl
Ensembl
MGI
PMID:9550720 GO_REF:0000107 MGI:1267265 NCBI chr 3:68,532,111...68,537,385
Ensembl chr 3:68,532,963...68,534,344
JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578079|PMID:15843411) Ensembl
Ensembl
MGI
PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chr 6:98,629,116...98,678,322
Ensembl chr 6:98,623,439...98,678,258
JBrowse link
G TXNRD1 thioredoxin reductase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3721365|PMID:17697936) Ensembl
Ensembl
MGI
PMID:17697936 GO_REF:0000107 MGI:3721365 NCBI chr 5:80,170,334...80,213,889
Ensembl chr 5:80,168,523...80,288,075
JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chr 6:144,242,639...144,529,659
Ensembl chr 6:144,242,656...144,555,880
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,572
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894149|PMID:9230313) MGI
Ensembl
Ensembl
PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997
JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934524|PMID:11287184) Ensembl
Ensembl
MGI
PMID:11287184 GO_REF:0000107 MGI:1934524 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,349,965...73,360,618
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4415813|PMID:18462699) MGI
Ensembl
Ensembl
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr 6:45,085,984...45,089,592
Ensembl chr 6:45,088,171...45,089,595
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3580923|PMID:15677567), (MGI:3807430|PMID:18550854)
(MGI:3838687|PMID:19182774)
Ensembl
Ensembl
MGI
PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 MGI:3580923 MGI:3807430 MGI:3838687 NCBI chr 6:164,282,242...164,297,636
Ensembl chr 6:164,281,737...164,297,637
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928688|PMID:11124112) Ensembl
Ensembl
MGI
PMID:11124112 GO_REF:0000107 MGI:1928688 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in ISO (MGI:5918349|PMID:28893950) MGI PMID:28893950 MGI:5918349 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821807|PMID:18794329) Ensembl
Ensembl
MGI
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,217...31,295,896
JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:71468|PMID:7720590) Ensembl
Ensembl
MGI
PMID:7720590 GO_REF:0000107 MGI:71468 NCBI chr 1:2,717,165...2,725,561
Ensembl chr 1:2,717,165...2,724,976
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:70235|PMID:7799920) MGI
Ensembl
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:70235|PMID:7799920) Ensembl
Ensembl
MGI
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr12:53,115,379...53,117,128
NCBI chr18:52,889,684...52,909,260
Ensembl chr18:52,889,684...52,900,967
JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:32,336,240...32,440,311
Ensembl chr16:32,336,292...32,437,103
JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:26,234,769...26,269,327
Ensembl chr12:26,234,753...26,271,561
JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:46,132,887...46,303,659
Ensembl chr10:46,132,914...46,303,365
JBrowse link
G ITGB1 integrin subunit beta 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,398...56,173,795
JBrowse link
G ITGB3 integrin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr12:16,694,466...16,752,228
Ensembl chr12:16,693,505...16,752,292
JBrowse link
G ITGB4 integrin subunit beta 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:5,651,292...5,685,601
Ensembl chr12:5,651,292...5,685,611
JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5448135|PMID:22949634) Ensembl
Ensembl
MGI
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,759...40,154,194
JBrowse link
G KDM6B lysine demethylase 6B involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:53,087,072...53,108,949
Ensembl chr12:53,091,334...53,108,214
JBrowse link
G LOC100359361 high mobility group AT-hook 2-like involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NANOG Nanog homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:169,064,134...169,065,292 JBrowse link
G NANOG Nanog homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3654744|PMID:16801560) Ensembl
Ensembl
MGI
PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chr 5:62,931,642...62,939,086
Ensembl chr 5:62,932,382...62,939,082
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3654744|PMID:16801560) Ensembl
Ensembl
MGI
PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chr 8:82,907,557...82,987,909
Ensembl chr 8:82,908,527...82,968,994
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76261|PMID:7657163) Ensembl
Ensembl
MGI
PMID:7657163 GO_REF:0000107 MGI:76261 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G HOXA11 homeobox A11 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,574...45,392,573
JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,937...95,464,066
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,450
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:55,322,016...55,327,600
Ensembl chr 7:55,322,010...55,325,732
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3711603|PMID:17462603) Ensembl
Ensembl
MGI
PMID:17462603 GO_REF:0000107 MGI:3711603 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOC4 exocyst complex component 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1195048|PMID:9441674) Ensembl
Ensembl
MGI
PMID:9441674 GO_REF:0000107 MGI:1195048 NCBI chr18:15,105,152...15,906,734
Ensembl chr18:15,105,138...15,906,707
JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2150572|PMID:11562355) Ensembl
Ensembl
MGI
PMID:11562355 GO_REF:0000107 MGI:2150572 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2150572|PMID:11562355) MGI
Ensembl
PMID:11562355 GO_REF:0000107 MGI:2150572 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 8:1,809,768...1,934,002
Ensembl chr 8:1,809,785...1,934,024
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr 9:10,413,182...10,435,158
Ensembl chr 9:10,413,187...10,435,100
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:86990|PMID:9106663) Ensembl
Ensembl
MGI
PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:86727|PMID:9126297) Ensembl
Ensembl
MGI
PMID:9126297 GO_REF:0000107 MGI:86727 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,515...41,002,137
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:51,153,978...51,203,678
Ensembl chr 2:51,154,086...51,202,176
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702797|PMID:16943278) Ensembl
Ensembl
MGI
PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,793
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,746
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16975
    developmental process 6444
      anatomical structure formation involved in morphogenesis 1213
        formation of primary germ layer 131
          mesoderm formation 78
            axial mesoderm formation + 3
            intermediate mesoderm formation + 1
            lateral mesoderm formation + 4
            mesoderm migration involved in gastrulation 2
            mesodermal cell differentiation + 34
            negative regulation of mesoderm formation 0
            paraxial mesoderm formation + 9
            positive regulation of mesoderm formation 0
            regulation of mesoderm formation + 0
Path 2
Term Annotations click to browse term
  biological_process 16975
    developmental process 6444
      anatomical structure development 5956
        multicellular organism development 5419
          embryo development 1311
            embryonic morphogenesis 675
              gastrulation 199
                formation of primary germ layer 131
                  mesoderm formation 78
                    axial mesoderm formation + 3
                    intermediate mesoderm formation + 1
                    lateral mesoderm formation + 4
                    mesoderm migration involved in gastrulation 2
                    mesodermal cell differentiation + 34
                    negative regulation of mesoderm formation 0
                    paraxial mesoderm formation + 9
                    positive regulation of mesoderm formation 0
                    regulation of mesoderm formation + 0
paths to the root