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ONTOLOGY REPORT - ANNOTATIONS

Term:mesoderm formation
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Accession:GO:0001707 term browser browse the term
Definition:The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.


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mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 acts_upstream_of_or_within IMP (PMID:10479450)
(PMID:17117439)		 MGI PMID:10479450 PMID:17117439 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169 		JBrowse link
G Ahdc1 AT hook, DNA binding motif, containing 1 involved_in IMP
ISO		 (MGI:7294317|PMID:35585237)
(PMID:35585237)		 UniProt
MGI		 PMID:35585237 GO_REF:0000119 MGI:4834177 MGI:7294317 NCBI chr 4:132,738,797...132,805,421
Ensembl chr 4:132,738,571...132,805,421 		JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within IMP (PMID:28911199) MGI PMID:28911199 NCBI chr 7:127,836,460...127,844,272
Ensembl chr 7:127,836,514...127,844,272 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (PMID:18462699), (PMID:7799920) MGI PMID:7799920 PMID:18462699 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IGI (PMID:15843411) MGI PMID:15843411 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (PMID:17699604) MGI PMID:17699604 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within IMP (PMID:10772805) MGI PMID:10772805 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173 		JBrowse link
G Chrd chordin acts_upstream_of_or_within IMP (PMID:12810603) MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (MGI:5296388|PMID:22072575), (MGI:5823085|PMID:27870829) UniProt PMID:22072575 PMID:27870829 MGI:5296388 MGI:5823085 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IDA (PMID:18462699) MGI PMID:18462699 NCBI chr19:30,523,276...30,526,896
Ensembl chr19:30,523,263...30,527,065 		JBrowse link
G Ecsit ECSIT signalling integrator acts_upstream_of_or_within IMP (PMID:14633973) MGI PMID:14633973 NCBI chr 9:21,982,731...21,997,648
Ensembl chr 9:21,983,542...21,996,734 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:10716450) MGI
GO_Central		 PMID:10716450 GO_REF:0000033 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Etv2 ets variant 2 acts_upstream_of_or_within IDA (PMID:18462699) MGI PMID:18462699 NCBI chr 7:30,333,041...30,335,934
Ensembl chr 7:30,333,041...30,335,277 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within IMP (PMID:16236767) MGI PMID:16236767 NCBI chr 2:93,525,978...93,652,913
Ensembl chr 2:93,491,373...93,652,913 		JBrowse link
G Gpi1 glucose-6-phosphate isomerase 1 acts_upstream_of_or_within IMP (PMID:8922529) MGI PMID:8922529 NCBI chr 7:33,900,752...33,929,761
Ensembl chr 7:33,900,755...33,929,761 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within IMP (PMID:9500550) MGI PMID:9500550 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Inhba inhibin beta-A acts_upstream_of_or_within IDA (PMID:7799920) MGI PMID:7799920 NCBI chr13:16,178,841...16,206,194
Ensembl chr13:16,186,436...16,206,206 		JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 acts_upstream_of_or_within IMP (PMID:16815997) MGI PMID:16815997 NCBI chr 4:123,243,386...123,581,594
Ensembl chr 4:123,243,426...123,581,331 		JBrowse link
G Mesp1 mesoderm posterior 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Mesp2 mesoderm posterior 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:79,460,475...79,463,179
Ensembl chr 7:79,460,475...79,463,187 		JBrowse link
G Msgn1 mesogenin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:11,258,383...11,258,949
Ensembl chr12:11,258,361...11,258,973 		JBrowse link
G Nf2 neurofibromin 2 acts_upstream_of_or_within IMP (PMID:9171370) MGI PMID:9171370 NCBI chr11:4,715,845...4,799,544
Ensembl chr11:4,715,845...4,799,536 		JBrowse link
G Nodal nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 TAS
IMP		 (MGI:52474|PMID:8429908)
(PMID:8429908)
(PMID:11311163)		 BHF-UCL
MGI		 PMID:8429908 PMID:11311163 MGI:52474 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Nog noggin acts_upstream_of_or_within IDA (PMID:18462699) MGI PMID:18462699 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within IMP (PMID:13129926) MGI PMID:13129926 NCBI chr 4:48,045,098...48,086,446
Ensembl chr 4:48,045,153...48,086,447 		JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within IMP (PMID:20637190) MGI PMID:20637190 NCBI chr10:77,095,056...77,105,420
Ensembl chr10:77,095,052...77,105,409 		JBrowse link
G Prkaca protein kinase, cAMP dependent, catalytic, alpha acts_upstream_of_or_within IGI (PMID:12004056) MGI PMID:12004056 NCBI chr 8:84,699,607...84,723,073
Ensembl chr 8:84,699,622...84,723,072 		JBrowse link
G Prkar1a protein kinase, cAMP dependent regulatory, type I, alpha acts_upstream_of_or_within IMP (PMID:12004056) MGI PMID:12004056 NCBI chr11:109,539,849...109,560,489
Ensembl chr11:109,540,231...109,560,482 		JBrowse link
G Scx scleraxis scleraxis bHLH transcription factor involved_in IMP (MGI:1343990|PMID:10477299) UniProt PMID:10477299 MGI:1343990 NCBI chr15:76,341,594...76,343,668
Ensembl chr15:76,341,652...76,343,658 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IMP (PMID:15084457) MGI PMID:15084457 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IMP (PMID:15084457) MGI PMID:15084457 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Snai1 snail family zinc finger 1 involved_in IMP (MGI:2153695|PMID:11689706)
(PMID:11689706)		 UniProt PMID:11689706 MGI:2153695 NCBI chr 2:167,380,115...167,384,734
Ensembl chr 2:167,380,115...167,384,734 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (PMID:11060034), (PMID:9799237) MGI PMID:9799237 PMID:11060034 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101 		JBrowse link
G T brachyury, T-box transcription factor T involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx19 T-box 19 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:164,965,403...164,988,342
Ensembl chr 1:164,965,424...164,988,342 		JBrowse link
G Tbx6 T-box 6 acts_upstream_of_or_within IMP (PMID:15755804)
(PMID:9490412)		 MGI PMID:9490412 PMID:15755804 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
G Tlx2 T cell leukemia, homeobox 2 acts_upstream_of_or_within IMP (PMID:9550720) MGI PMID:9550720 NCBI chr 6:83,045,306...83,047,206
Ensembl chr 6:83,045,305...83,047,274 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within IGI (PMID:15843411) MGI PMID:15843411 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221 		JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within IMP (PMID:17697936) MGI PMID:17697936 NCBI chr10:82,669,785...82,733,558
Ensembl chr10:82,669,785...82,733,546 		JBrowse link
G Wls wntless WNT ligand secretion mediator involved_in IMP (MGI:4397730|PMID:19841259)
(PMID:19841259)		 UniProt PMID:19841259 MGI:4397730 NCBI chr 3:159,545,287...159,644,302
Ensembl chr 3:159,545,309...159,644,300 		JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 acts_upstream_of_or_within IMP (PMID:10431240) MGI PMID:10431240 NCBI chr11:103,665,000...103,708,854
Ensembl chr11:103,664,976...103,708,783 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within IMP (PMID:9230313) MGI PMID:9230313 NCBI chr17:26,350,294...26,414,784
Ensembl chr17:26,357,662...26,414,785 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within IMP (PMID:11287184) MGI PMID:11287184 NCBI chr 4:141,028,532...141,056,695
Ensembl chr 4:141,028,551...141,056,695 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:14511481) MGI PMID:14511481 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 T cell acute lymphocytic leukemia 1 acts_upstream_of_or_within IMP (PMID:15677567), (PMID:18550854)
(PMID:19182774)		 MGI PMID:15677567 PMID:18550854 PMID:19182774 NCBI chr 4:114,913,623...114,928,952
Ensembl chr 4:114,913,623...114,928,952 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (PMID:11124112) MGI PMID:11124112 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in IMP (PMID:28893950) MGI PMID:28893950 NCBI chr 7:105,392,101...105,393,550
Ensembl chr 7:105,388,600...105,393,568 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:65,481,069...65,489,970
Ensembl chr 8:65,481,069...65,489,988 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (PMID:18794329) MGI PMID:18794329 NCBI chr 1:119,472,762...119,576,826
Ensembl chr 1:119,472,767...119,576,730 		JBrowse link
G T brachyury, T-box transcription factor T acts_upstream_of_or_within IMP (PMID:7720590) MGI PMID:7720590 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (PMID:7799920) MGI PMID:7799920 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IGI
IMP		 (PMID:17881493) MGI PMID:17881493 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS		 MGI
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374 		JBrowse link
G Inhba inhibin beta-A acts_upstream_of_or_within IDA (PMID:7799920) MGI PMID:7799920 NCBI chr13:16,178,841...16,206,194
Ensembl chr13:16,186,436...16,206,206 		JBrowse link
G Itga2 integrin alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:114,969,617...115,068,588
Ensembl chr13:114,969,617...115,068,636 		JBrowse link
G Itga3 integrin alpha 3 involved_in ISO
IEA		 (PMID:23154389) UniProt
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr11:94,935,301...94,967,637
Ensembl chr11:94,935,300...94,967,627 		JBrowse link
G Itga8 integrin alpha 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:12,111,443...12,306,755
Ensembl chr 2:12,111,443...12,306,733 		JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681 		JBrowse link
G Itgb3 integrin beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr11:104,498,826...104,561,302
Ensembl chr11:104,498,826...104,561,302 		JBrowse link
G Itgb4 integrin beta 4 involved_in ISO
IEA		 (PMID:23154389) UniProt
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr11:115,865,556...115,899,238
Ensembl chr11:115,865,535...115,899,238 		JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A acts_upstream_of_or_within IMP (PMID:22949634) MGI PMID:22949634 NCBI chr  X:18,027,101...18,147,061
Ensembl chr  X:18,028,814...18,146,175 		JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B involved_in IMP (MGI:5574281|PMID:23856522) BHF-UCL PMID:23856522 MGI:5574281 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501 		JBrowse link
G Mir145a microRNA 145a involved_in ISO (PMID:19409607) BHF-UCL PMID:19409607 NCBI chr18:61,780,896...61,780,965
Ensembl chr18:61,780,896...61,780,965 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of
acts_upstream_of_or_within		 IDA
IGI		 (PMID:16801560) MGI PMID:16801560 NCBI chr 6:122,684,448...122,691,592
Ensembl chr 6:122,684,448...122,691,592 		JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of_or_within IDA (PMID:10742100) MGI PMID:10742100 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within IGI (PMID:16801560) MGI PMID:16801560 NCBI chr 8:80,065,024...80,126,057
Ensembl chr 8:80,065,024...80,126,147 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:7657163) MGI PMID:7657163 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in IDA (MGI:3768605|PMID:17785448)
(PMID:17785448)		 UniProt PMID:17785448 MGI:3768605 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Hoxa11 homeobox A11 involved_in IDA (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Pax2 paired box 2 involved_in IDA (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of IGI (PMID:17462603) MGI PMID:17462603 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Six2 sine oculis-related homeobox 2 involved_in IDA (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Tbx6 T-box 6 acts_upstream_of_or_within IMP (PMID:9490412) MGI PMID:9490412 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:30,523,276...30,526,896
Ensembl chr19:30,523,263...30,527,065 		JBrowse link
G Mesp1 mesoderm posterior 1 involved_in IDA (MGI:4441249|PMID:18593560)
(PMID:18593560)		 BHF-UCL PMID:18593560 MGI:4441249 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (PMID:17462603) MGI PMID:17462603 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 acts_upstream_of_or_within IMP (PMID:9441674) MGI PMID:9441674 NCBI chr 6:33,226,025...33,950,914
Ensembl chr 6:33,226,020...33,950,914 		JBrowse link
G Foxc1 forkhead box C1 involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:3047050|PMID:15196959)
(PMID:15196959)
(PMID:11562355)		 UniProt
MGI		 PMID:11562355 PMID:15196959 MGI:3047050 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IGI (PMID:11562355) MGI PMID:11562355 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within IGI (PMID:10090727) MGI PMID:10090727 NCBI chr 5:115,087,039...115,109,121
Ensembl chr 5:115,087,039...115,109,153 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within IMP (PMID:16109169) MGI PMID:16109169 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (PMID:10090727) MGI PMID:10090727 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Wnt11 wingless-type MMTV integration site family, member 11 acts_upstream_of_or_within IGI (PMID:25813538) MGI PMID:25813538 NCBI chr 7:98,484,293...98,503,954
Ensembl chr 7:98,484,319...98,504,402 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (PMID:25813538) MGI PMID:25813538 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9106663) MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IMP (PMID:9126297) MGI PMID:9126297 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
positive regulation of mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir1a-1 microRNA 1a-1 involved_in ISO (PMID:23939491) BHF-UCL PMID:23939491 NCBI chr 2:180,030,841...180,030,917
Ensembl chr 2:180,030,841...180,030,917 		JBrowse link
G Mir1a-2 microRNA 1a-2 involved_in ISO (PMID:23939491) BHF-UCL PMID:23939491 NCBI chr18:10,785,481...10,785,552
Ensembl chr18:10,785,481...10,785,552 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:56,253,297...56,266,519
Ensembl chr10:56,253,426...56,278,609 		JBrowse link
G Mir150 microRNA 150 involved_in ISO (PMID:23765923) BHF-UCL PMID:23765923 NCBI chr 7:44,771,181...44,771,245
Ensembl chr 7:44,771,181...44,771,245 		JBrowse link
G Mir200c microRNA 200c involved_in ISO (PMID:23765923) BHF-UCL PMID:23765923 NCBI chr 6:124,695,285...124,695,353
Ensembl chr 6:124,695,285...124,695,353 		JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a wingless-type MMTV integration site family, member 3A involved_in ISO
IEA		 MGI
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IGI (PMID:16943278) MGI PMID:16943278 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IGI (PMID:16943278) MGI PMID:16943278 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA
IGI		 (PMID:17881493) MGI PMID:17881493 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28753
    developmental process 7483
      anatomical structure formation involved in morphogenesis 1429
        formation of primary germ layer 140
          mesoderm formation 82
            axial mesoderm formation + 3
            intermediate mesoderm formation + 1
            lateral mesoderm formation + 4
            mesoderm migration involved in gastrulation 3
            mesodermal cell differentiation + 35
            negative regulation of mesoderm formation 0
            paraxial mesoderm formation + 9
            positive regulation of mesoderm formation 2
            regulation of mesoderm formation + 2
Path 2
Term Annotations click to browse term
  biological_process 28753
    developmental process 7483
      anatomical structure development 6939
        multicellular organism development 5512
          embryo development 1392
            embryonic morphogenesis 711
              gastrulation 222
                formation of primary germ layer 140
                  mesoderm formation 82
                    axial mesoderm formation + 3
                    intermediate mesoderm formation + 1
                    lateral mesoderm formation + 4
                    mesoderm migration involved in gastrulation 3
                    mesodermal cell differentiation + 35
                    negative regulation of mesoderm formation 0
                    paraxial mesoderm formation + 9
                    positive regulation of mesoderm formation 2
                    regulation of mesoderm formation + 2
paths to the root