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ONTOLOGY REPORT - ANNOTATIONS


Term:mesoderm formation
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Accession:GO:0001707 term browser browse the term
Definition:The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.



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mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3695845|PMID:17117439)
(MGI:1345529|PMID:10479450)
MGI
Ensembl
Ensembl
PMID:10479450 PMID:17117439 GO_REF:0000107 MGI:1345529 MGI:3695845 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652
JBrowse link
G ARMC5 armadillo repeat containing 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5913685|PMID:28911199) MGI
Ensembl
Ensembl
PMID:28911199 GO_REF:0000107 MGI:5913685 NCBI chr 6:16,782,732...16,789,490
Ensembl chr 6:16,781,860...16,788,878
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4415813|PMID:18462699), (MGI:70235|PMID:7799920) MGI
Ensembl
PMID:7799920 PMID:18462699 GO_REF:0000107 MGI:4415813 MGI:70235 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:3578079|PMID:15843411) MGI PMID:15843411 MGI:3578079 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3722226|PMID:17699604) Ensembl
Ensembl
MGI
PMID:17699604 GO_REF:0000107 MGI:3722226 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO (MGI:1855789|PMID:10772805) MGI PMID:10772805 MGI:1855789 NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024
JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5296388|PMID:22072575), (MGI:5823085|PMID:27870829) UniProt PMID:22072575 PMID:27870829 MGI:5296388 MGI:5823085 NCBI chr 9:59,427,661...59,450,436
Ensembl chr 9:59,427,569...59,450,434
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link
G ECSIT ECSIT signaling integrator acts_upstream_of_or_within ISO (MGI:2682456|PMID:14633973) MGI PMID:14633973 MGI:2682456 NCBI chr20:49,848,848...49,867,075
Ensembl chr20:49,848,912...49,867,066
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:1354065|PMID:10716450)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:10716450 PMID:21873635 MGI:1354065 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr 1:116,971,238...116,974,831
Ensembl chr 1:116,971,365...116,985,796
JBrowse link
G EXT2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO (MGI:3608483|PMID:16236767) MGI PMID:16236767 MGI:3608483 NCBI chr18:44,987,310...45,122,339
Ensembl chr18:44,987,748...45,129,974
JBrowse link
G GPI glucose-6-phosphate isomerase acts_upstream_of_or_within ISO (MGI:84014|PMID:8922529) MGI PMID:8922529 MGI:84014 NCBI chr 1:117,922,380...117,948,325
Ensembl chr 1:117,922,635...117,948,316
JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1197801|PMID:9500550) Ensembl
Ensembl
MGI
PMID:9500550 GO_REF:0000107 MGI:1197801 NCBI chr 4:55,231,061...55,234,640
Ensembl chr 4:55,231,481...55,234,265
JBrowse link
G INHBA inhibin subunit beta A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:70235|PMID:7799920) MGI
Ensembl
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr18:8,272,978...8,288,432
Ensembl chr18:8,272,872...8,283,794
JBrowse link
G MACF1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (MGI:3640889|PMID:16815997) MGI PMID:16815997 MGI:3640889 NCBI chr15:3,361,887...3,703,891
Ensembl chr15:3,362,867...3,573,325
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:52,757,581...52,759,987
Ensembl chr 3:52,756,836...52,760,004
JBrowse link
G MSGN1 mesogenin 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:13,266,674...13,267,968
Ensembl chr17:13,266,674...13,267,240
JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:707944|PMID:9171370) MGI
Ensembl
Ensembl
PMID:9171370 GO_REF:0000107 MGI:707944 NCBI chr26:22,816,869...22,896,103
Ensembl chr26:22,816,551...22,894,196
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2155575|PMID:11311163) MGI
Ensembl
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G NOG noggin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4415813|PMID:18462699) MGI
Ensembl
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:31,455,389...31,456,057 JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (MGI:3042044|PMID:13129926) MGI PMID:13129926 MGI:3042044 NCBI chr11:56,806,506...56,846,997
Ensembl chr11:56,812,804...56,847,689
JBrowse link
G POFUT2 protein O-fucosyltransferase 2 acts_upstream_of_or_within ISO (MGI:4838381|PMID:20637190) MGI PMID:20637190 MGI:4838381 NCBI chr31:38,813,252...38,821,656
Ensembl chr31:38,813,255...38,818,734
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (MGI:2183097|PMID:12004056) MGI PMID:12004056 MGI:2183097 NCBI chr20:48,416,730...48,425,237
Ensembl chr20:48,409,045...48,426,669
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of_or_within ISO (MGI:2183097|PMID:12004056) MGI PMID:12004056 MGI:2183097 NCBI chr 9:15,180,940...15,203,035
Ensembl chr 9:15,181,393...15,200,683
JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr13:37,701,781...37,704,949
Ensembl chr13:37,703,232...37,704,657
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039049|PMID:15084457) MGI
Ensembl
Ensembl
PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3039049|PMID:15084457) MGI
Ensembl
PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in ISO (MGI:2153695|PMID:11689706) UniProt PMID:11689706 MGI:2153695 NCBI chr24:36,498,343...36,503,623
Ensembl chr24:36,498,062...36,503,628
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1312998|PMID:9799237), (MGI:1927031|PMID:11060034) Ensembl
Ensembl
MGI
PMID:9799237 PMID:11060034 GO_REF:0000107 MGI:1312998 MGI:1927031 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533
JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:30,198,912...30,248,410
Ensembl chr 7:30,185,850...30,365,512
JBrowse link
G TBX6 T-box transcription factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2447720|PMID:9490412)
(MGI:3577662|PMID:15755804)
MGI
Ensembl
Ensembl
PMID:9490412 PMID:15755804 GO_REF:0000107 MGI:2447720 MGI:3577662 NCBI chr 6:18,093,201...18,098,592
Ensembl chr 6:18,093,189...18,097,636
JBrowse link
G TBXT T-box transcription factor T involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:54,183,495...54,192,331
Ensembl chr 1:54,183,153...54,192,352
JBrowse link
G TLX2 T cell leukemia homeobox 2 acts_upstream_of_or_within ISO (MGI:1267265|PMID:9550720) MGI PMID:9550720 MGI:1267265 NCBI chr17:48,625,008...48,627,085
Ensembl chr17:48,625,632...48,627,052
JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3578079|PMID:15843411) MGI
Ensembl
Ensembl
PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chr 7:75,337,347...75,397,485
Ensembl chr 7:75,335,235...75,398,325
JBrowse link
G TXNRD1 thioredoxin reductase 1 acts_upstream_of_or_within ISO (MGI:3721365|PMID:17697936) MGI PMID:17697936 MGI:3721365 NCBI chr10:33,904,065...34,021,549
Ensembl chr10:33,886,343...34,021,696
JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) UniProt PMID:19841259 MGI:4397730 NCBI chr 6:77,053,242...77,146,549
Ensembl chr 6:77,053,237...77,317,761
JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within ISO (MGI:1341483|PMID:10431240) MGI PMID:10431240 MGI:1341483 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO (MGI:894149|PMID:9230313) MGI PMID:9230313 MGI:894149 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G EPHA2 EPH receptor A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934524|PMID:11287184) MGI
Ensembl
Ensembl
PMID:11287184 GO_REF:0000107 MGI:1934524 NCBI chr 2:81,534,130...81,561,722
Ensembl chr 2:81,534,125...81,561,725
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2677178|PMID:14511481) MGI
Ensembl
Ensembl
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr 1:116,971,238...116,974,831
Ensembl chr 1:116,971,365...116,985,796
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO (MGI:3838687|PMID:19182774)
(MGI:3580923|PMID:15677567), (MGI:3807430|PMID:18550854)
MGI PMID:15677567 PMID:18550854 PMID:19182774 MGI:3580923 MGI:3807430 MGI:3838687 NCBI chr15:13,446,752...13,462,038
Ensembl chr15:13,449,481...13,462,047
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in ISO (MGI:5918349|PMID:28893950) MGI PMID:28893950 MGI:5918349 NCBI chr21:29,917,941...29,919,347
Ensembl chr21:29,917,947...29,919,330
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3821807|PMID:18794329) MGI
Ensembl
Ensembl
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216
JBrowse link
G TBXT T-box transcription factor T acts_upstream_of_or_within ISO (MGI:71468|PMID:7720590) MGI PMID:7720590 MGI:71468 NCBI chr 1:54,183,495...54,192,331
Ensembl chr 1:54,183,153...54,192,352
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:70235|PMID:7799920) MGI
Ensembl
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:70235|PMID:7799920) Ensembl
Ensembl
MGI
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr18:8,272,978...8,288,432
Ensembl chr18:8,272,872...8,283,794
JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:62,170,137...62,268,962
Ensembl chr 4:62,170,452...62,268,983
JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:26,065,792...26,095,649
Ensembl chr 9:26,062,393...26,094,422
JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:21,034,630...21,244,304
Ensembl chr 2:21,075,653...21,241,951
JBrowse link
G ITGB1 integrin subunit beta 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961
JBrowse link
G ITGB3 integrin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:9,179,667...9,231,061
Ensembl chr 9:9,182,562...9,231,451
JBrowse link
G ITGB4 integrin subunit beta 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:4,825,148...4,855,266
Ensembl chr 9:4,825,292...4,855,820
JBrowse link
G KDM6A lysine demethylase 6A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5448135|PMID:22949634) MGI
Ensembl
Ensembl
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:38,745,854...38,964,029
Ensembl chr  X:38,745,854...38,959,842
JBrowse link
G KDM6B lysine demethylase 6B involved_in ISO (MGI:5574281|PMID:23856522) BHF-UCL PMID:23856522 MGI:5574281 NCBI chr 5:32,689,000...32,711,026
Ensembl chr 5:32,696,211...32,710,666
JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC481709 POU domain, class 5, transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:860,702...866,099 JBrowse link
G NANOG Nanog homeobox acts_upstream_of_or_within ISO (MGI:3654744|PMID:16801560) MGI PMID:16801560 MGI:3654744 NCBI chr27:37,262,558...37,266,449 JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3654744|PMID:16801560) Ensembl
Ensembl
MGI
PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76261|PMID:7657163) Ensembl
Ensembl
MGI
PMID:7657163 GO_REF:0000107 MGI:76261 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G HOXA11 homeobox A11 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:4441249 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3711603|PMID:17462603) Ensembl
Ensembl
MGI
PMID:17462603 GO_REF:0000107 MGI:3711603 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOC4 exocyst complex component 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1195048|PMID:9441674) Ensembl
Ensembl
MGI
PMID:9441674 GO_REF:0000107 MGI:1195048 NCBI chr14:3,334,286...4,077,478
Ensembl chr14:3,334,220...4,077,411
JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within
ISO (MGI:3047050|PMID:15196959)
(MGI:2150572|PMID:11562355)
UniProt
MGI
PMID:11562355 PMID:15196959 MGI:2150572 MGI:3047050
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2150572|PMID:11562355) MGI
Ensembl
PMID:11562355 GO_REF:0000107 MGI:2150572 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334099|PMID:10090727) MGI
Ensembl
Ensembl
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019
JBrowse link
G LOC119863920 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr21:22,442,496...22,463,040
Ensembl chr21:22,446,051...22,463,173
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5634837|PMID:25813538) MGI
Ensembl
Ensembl
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:86990|PMID:9106663) MGI
Ensembl
Ensembl
PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693
JBrowse link
G LOC119863920 forkhead box C2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107
G WNT3A Wnt family member 3A acts_upstream_of_or_within ISO (MGI:86727|PMID:9126297) MGI PMID:9126297 MGI:86727 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702797|PMID:16943278) Ensembl
Ensembl
MGI
PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16237
    developmental process 6471
      anatomical structure formation involved in morphogenesis 1208
        formation of primary germ layer 131
          mesoderm formation 77
            axial mesoderm formation + 3
            intermediate mesoderm formation + 1
            lateral mesoderm formation + 4
            mesoderm migration involved in gastrulation 2
            mesodermal cell differentiation + 33
            negative regulation of mesoderm formation 0
            paraxial mesoderm formation + 10
            positive regulation of mesoderm formation 0
            regulation of mesoderm formation + 0
Path 2
Term Annotations click to browse term
  biological_process 16237
    developmental process 6471
      anatomical structure development 6003
        multicellular organism development 5460
          embryo development 1316
            embryonic morphogenesis 673
              gastrulation 196
                formation of primary germ layer 131
                  mesoderm formation 77
                    axial mesoderm formation + 3
                    intermediate mesoderm formation + 1
                    lateral mesoderm formation + 4
                    mesoderm migration involved in gastrulation 2
                    mesodermal cell differentiation + 33
                    negative regulation of mesoderm formation 0
                    paraxial mesoderm formation + 10
                    positive regulation of mesoderm formation 0
                    regulation of mesoderm formation + 0
paths to the root