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ONTOLOGY REPORT - ANNOTATIONS

Term:mesoderm formation
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Accession:GO:0001707 term browser browse the term
Definition:The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.


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mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,141,870...45,159,255
Ensembl chr18:45,142,586...45,159,255 		JBrowse link
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10479450)
(PMID:17117439)		 Ensembl
MGI		 PMID:10479450 PMID:17117439 GO_REF:0000107 NCBI chr36:3,743,257...3,818,659
Ensembl chr36:3,744,163...3,818,652 		JBrowse link
G AHDC1 AT-hook DNA binding motif containing 1 involved_in ISO (PMID:35585237)
(MGI:7294317|PMID:35585237)		 UniProt PMID:35585237 MGI:7294317 NCBI chr 2:72,711,626...72,762,802
Ensembl chr 2:72,747,701...72,752,605 		JBrowse link
G ARMC5 armadillo repeat containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28911199) Ensembl
MGI		 PMID:28911199 GO_REF:0000107 NCBI chr 6:16,782,732...16,789,490
Ensembl chr 6:16,781,860...16,788,878 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699), (PMID:7799920) Ensembl
MGI		 PMID:7799920 PMID:18462699 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843411) Ensembl
MGI		 PMID:15843411 GO_REF:0000107 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17699604) Ensembl
MGI		 PMID:17699604 GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10772805) Ensembl
MGI		 PMID:10772805 GO_REF:0000107 NCBI chr37:11,342,292...11,540,199
Ensembl chr37:11,342,384...11,533,024 		JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (PMID:12810603) MGI PMID:12810603 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:59,427,661...59,450,436
Ensembl chr 9:59,427,569...59,450,434 		JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496 		JBrowse link
G ECSIT ECSIT signaling integrator acts_upstream_of_or_within ISO (PMID:14633973) MGI PMID:14633973 NCBI chr20:49,848,848...49,867,075
Ensembl chr20:49,848,912...49,867,066 		JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (PMID:10716450) MGI PMID:10716450 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527 		JBrowse link
G ETV2 ETS variant transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699) Ensembl
MGI		 PMID:18462699 GO_REF:0000107 NCBI chr 1:116,971,238...116,974,831
Ensembl chr 1:116,971,365...116,985,796 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16236767) Ensembl
MGI		 PMID:16236767 GO_REF:0000107 NCBI chr18:44,987,310...45,122,339
Ensembl chr18:44,987,748...45,129,974 		JBrowse link
G GPI glucose-6-phosphate isomerase acts_upstream_of_or_within ISO (PMID:8922529) MGI PMID:8922529 NCBI chr 1:117,922,380...117,948,325
Ensembl chr 1:117,922,635...117,948,316 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500550) Ensembl
MGI		 PMID:9500550 GO_REF:0000107 NCBI chr 4:55,231,061...55,234,640
Ensembl chr 4:55,231,481...55,234,265 		JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr18:8,272,978...8,288,432
Ensembl chr18:8,272,872...8,283,794 		JBrowse link
G MACF1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (PMID:16815997) MGI PMID:16815997 NCBI chr15:3,361,887...3,703,891
Ensembl chr15:3,362,867...3,573,325 		JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9171370) Ensembl
MGI		 PMID:9171370 GO_REF:0000107 NCBI chr26:22,816,869...22,896,103
Ensembl chr26:22,816,551...22,894,196 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699) Ensembl
MGI		 PMID:18462699 GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:13129926) MGI PMID:13129926 NCBI chr11:56,806,506...56,846,997
Ensembl chr11:56,812,804...56,847,689 		JBrowse link
G POFUT2 protein O-fucosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20637190) Ensembl
MGI		 PMID:20637190 GO_REF:0000107 NCBI chr31:38,813,252...38,821,656
Ensembl chr31:38,813,255...38,818,734 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004056) Ensembl
MGI		 PMID:12004056 GO_REF:0000107 NCBI chr20:48,416,730...48,425,237
Ensembl chr20:48,409,045...48,426,669 		JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004056) Ensembl
MGI		 PMID:12004056 GO_REF:0000107 NCBI chr 9:15,180,940...15,203,035
Ensembl chr 9:15,181,393...15,200,683 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299)
(PMID:10477299)		 UniProt PMID:10477299 MGI:1343990 NCBI chr13:37,701,781...37,704,949
Ensembl chr13:37,703,232...37,704,657 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084457) Ensembl
MGI		 PMID:15084457 GO_REF:0000107 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084457) Ensembl
MGI		 PMID:15084457 GO_REF:0000107 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:36,498,343...36,503,623
Ensembl chr24:36,498,062...36,503,628 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11060034), (PMID:9799237) Ensembl
MGI		 PMID:9799237 PMID:11060034 GO_REF:0000107 NCBI chr12:11,664,441...11,673,846
Ensembl chr12:11,664,527...11,671,533 		JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:30,198,912...30,248,410
Ensembl chr 7:30,185,850...30,365,512 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804)
(PMID:9490412)		 Ensembl
MGI		 PMID:9490412 PMID:15755804 GO_REF:0000107 NCBI chr 6:18,093,201...18,098,592
Ensembl chr 6:18,093,189...18,097,636 		JBrowse link
G TBXT T-box transcription factor T involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:54,183,495...54,192,331
Ensembl chr 1:54,183,153...54,192,352 		JBrowse link
G TLX2 T cell leukemia homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9550720) Ensembl
MGI		 PMID:9550720 GO_REF:0000107 NCBI chr17:48,625,008...48,627,085
Ensembl chr17:48,625,632...48,627,052 		JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843411) Ensembl
MGI		 PMID:15843411 GO_REF:0000107 NCBI chr 7:75,337,347...75,397,485
Ensembl chr 7:75,335,235...75,398,325 		JBrowse link
G TXNRD1 thioredoxin reductase 1 acts_upstream_of_or_within ISO (PMID:17697936) MGI PMID:17697936 NCBI chr10:33,904,065...34,021,549
Ensembl chr10:33,886,343...34,021,696 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259)
(PMID:19841259)		 UniProt PMID:19841259 MGI:4397730 NCBI chr 6:77,053,242...77,146,549
Ensembl chr 6:77,053,237...77,317,761 		JBrowse link
G WNT3 Wnt family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10431240) Ensembl
MGI		 PMID:10431240 GO_REF:0000107 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343 		JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 2:81,534,130...81,561,722
Ensembl chr 2:81,534,125...81,561,725 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19182774)
(PMID:15677567), (PMID:18550854)		 Ensembl
MGI		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 NCBI chr15:13,446,752...13,462,038
Ensembl chr15:13,449,481...13,462,047 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124112) Ensembl
MGI		 PMID:11124112 GO_REF:0000107 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:29,917,941...29,919,347
Ensembl chr21:29,917,947...29,919,330 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7720590) Ensembl
MGI		 PMID:7720590 GO_REF:0000107 NCBI chr 1:54,183,495...54,192,331
Ensembl chr 1:54,183,153...54,192,352 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr18:8,272,978...8,288,432
Ensembl chr18:8,272,872...8,283,794 		JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:62,170,137...62,268,962
Ensembl chr 4:62,170,452...62,268,983 		JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:26,065,792...26,095,649
Ensembl chr 9:26,062,393...26,094,422 		JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:21,034,630...21,244,304
Ensembl chr 2:21,075,653...21,241,951 		JBrowse link
G ITGB1 integrin subunit beta 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961 		JBrowse link
G ITGB3 integrin subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:9,179,667...9,231,061
Ensembl chr 9:9,182,562...9,231,451 		JBrowse link
G ITGB4 integrin subunit beta 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,825,148...4,855,266
Ensembl chr 9:4,825,292...4,855,820 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chr  X:38,745,854...38,964,029
Ensembl chr  X:38,745,854...38,959,842 		JBrowse link
G KDM6B lysine demethylase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:32,689,000...32,711,026
Ensembl chr 5:32,696,211...32,710,666 		JBrowse link
G MIR145 microRNA mir-145 involved_in ISO (PMID:19409607) BHF-UCL PMID:19409607 NCBI chr 4:59,533,128...59,533,210
Ensembl chr 4:59,533,128...59,533,210 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NANOG Nanog homeobox acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:16801560) MGI PMID:16801560 NCBI chr27:37,262,558...37,266,449 JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801560) Ensembl
MGI		 PMID:16801560 GO_REF:0000107 NCBI chr15:44,093,491...44,171,177
Ensembl chr15:44,095,497...44,170,098 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7657163) Ensembl
MGI		 PMID:7657163 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653 		JBrowse link
G HOXA11 homeobox A11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of ISO (PMID:17462603) MGI PMID:17462603 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9490412) Ensembl
MGI		 PMID:9490412 GO_REF:0000107 NCBI chr 6:18,093,201...18,098,592
Ensembl chr 6:18,093,189...18,097,636 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:17462603) MGI PMID:17462603 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOC4 exocyst complex component 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441674) Ensembl
MGI		 PMID:9441674 GO_REF:0000107 NCBI chr14:3,334,286...4,077,478
Ensembl chr14:3,334,220...4,077,411 		JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3047050|PMID:15196959)
(PMID:15196959)
(PMID:11562355)		 UniProt
MGI		 PMID:11562355 PMID:15196959 MGI:3047050
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:11562355) MGI PMID:11562355 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10090727) Ensembl
MGI		 PMID:10090727 GO_REF:0000107 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10090727) Ensembl
MGI		 PMID:10090727 GO_REF:0000107 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019 		JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr21:22,442,496...22,463,040
Ensembl chr21:22,446,051...22,463,173 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9126297) Ensembl
MGI		 PMID:9126297 GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
positive regulation of mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR1-1 microRNA mir-1-1 involved_in ISO (PMID:23939491) BHF-UCL PMID:23939491 NCBI chr24:46,481,078...46,481,136
Ensembl chr24:46,481,078...46,481,136 		JBrowse link
G MIR1-2 microRNA mir-1-2 involved_in ISO (PMID:23939491) BHF-UCL PMID:23939491 NCBI chr 7:66,214,380...66,214,438
Ensembl chr 7:66,214,366...66,214,450 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936 		JBrowse link
G MIR150 microRNA mir-150 involved_in ISO (PMID:23765923) BHF-UCL PMID:23765923 NCBI chr 1:106,998,756...106,998,812
Ensembl chr 1:106,998,756...106,998,812 		JBrowse link
G MIR200C microRNA mir-200c involved_in ISO (PMID:23765923) BHF-UCL PMID:23765923 NCBI chr27:38,082,097...38,082,159
Ensembl chr27:38,082,091...38,082,169 		JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17088
    developmental process 6555
      anatomical structure formation involved in morphogenesis 1324
        formation of primary germ layer 137
          mesoderm formation 81
            axial mesoderm formation + 3
            intermediate mesoderm formation + 1
            lateral mesoderm formation + 4
            mesoderm migration involved in gastrulation 2
            mesodermal cell differentiation + 36
            negative regulation of mesoderm formation 0
            paraxial mesoderm formation + 10
            positive regulation of mesoderm formation 2
            regulation of mesoderm formation + 2
Path 2
Term Annotations click to browse term
  biological_process 17088
    developmental process 6555
      anatomical structure development 6176
        multicellular organism development 5028
          embryo development 1324
            embryonic morphogenesis 685
              gastrulation 208
                formation of primary germ layer 137
                  mesoderm formation 81
                    axial mesoderm formation + 3
                    intermediate mesoderm formation + 1
                    lateral mesoderm formation + 4
                    mesoderm migration involved in gastrulation 2
                    mesodermal cell differentiation + 36
                    negative regulation of mesoderm formation 0
                    paraxial mesoderm formation + 10
                    positive regulation of mesoderm formation 2
                    regulation of mesoderm formation + 2
paths to the root