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ONTOLOGY REPORT - ANNOTATIONS

Term:mesoderm formation
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Accession:GO:0001707 term browser browse the term
Definition:The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.


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mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:44,026,501...44,044,928
Ensembl chr11:44,522,797...44,699,447 		JBrowse link
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17117439)
(PMID:10479450)		 Ensembl
MGI		 PMID:10479450 PMID:17117439 GO_REF:0000107 NCBI chr2B:44,994,175...45,133,490
Ensembl chr2B:162,234,823...162,297,805 		JBrowse link
G AHDC1 AT-hook DNA binding motif containing 1 involved_in ISO (PMID:35585237)
(MGI:7294317|PMID:35585237)		 UniProt PMID:35585237 MGI:7294317 NCBI chr 1:26,794,800...26,864,669 JBrowse link
G ARMC5 armadillo repeat containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28911199) Ensembl
MGI		 PMID:28911199 GO_REF:0000107 NCBI chr16:23,498,343...23,507,287
Ensembl chr16:31,828,037...31,840,479 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699), (PMID:7799920) Ensembl
MGI		 PMID:7799920 PMID:18462699 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843411) Ensembl
MGI		 PMID:15843411 GO_REF:0000107 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17699604) Ensembl
MGI		 PMID:17699604 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10772805) Ensembl
MGI		 PMID:10772805 GO_REF:0000107 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072 		JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (PMID:12810603) MGI PMID:12810603 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:94,473,423...94,511,285
Ensembl chr 9:123,011,968...123,032,855 		JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18462699) MGI PMID:18462699 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776 		JBrowse link
G ECSIT ECSIT signaling integrator acts_upstream_of_or_within ISO (PMID:14633973) MGI PMID:14633973 NCBI chr19:11,052,057...11,075,308
Ensembl chr19:11,763,701...11,786,743 		JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10716450) MGI
TreeGrafter		 PMID:10716450 GO_REF:0000118 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274 		JBrowse link
G ETV2 ETS variant transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699) Ensembl
MGI		 PMID:18462699 GO_REF:0000107 NCBI chr19:32,571,829...32,575,083
Ensembl chr19:41,307,864...41,311,004 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16236767) Ensembl
MGI		 PMID:16236767 GO_REF:0000107 NCBI chr11:44,055,670...44,204,055
Ensembl chr11:44,522,797...44,699,447 		JBrowse link
G GPI glucose-6-phosphate isomerase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8922529) Ensembl
MGI		 PMID:8922529 GO_REF:0000107 NCBI chr19:31,301,469...31,355,362
Ensembl chr19:40,024,584...40,080,598 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500550) Ensembl
MGI		 PMID:9500550 GO_REF:0000107 NCBI chr 5:149,876,970...149,880,269
Ensembl chr 5:155,875,935...155,878,166 		JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr 7:42,538,591...42,556,578
Ensembl chr 7:42,580,730...42,595,097 		JBrowse link
G MACF1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (PMID:16815997) MGI PMID:16815997 NCBI chr 1:38,369,021...38,771,911
Ensembl chr 1:39,820,394...40,096,558 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210 		JBrowse link
G MSGN1 mesogenin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:17,797,769...17,799,243
Ensembl chr2A:17,926,027...17,926,608 		JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9171370) Ensembl
MGI		 PMID:9171370 GO_REF:0000107 NCBI chr22:10,648,022...10,738,167
Ensembl chr22:28,454,119...28,544,013 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18462699) Ensembl
MGI		 PMID:18462699 GO_REF:0000107 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:13129926) MGI PMID:13129926 NCBI chr 9:70,907,056...70,950,221 JBrowse link
G POFUT2 protein O-fucosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20637190) Ensembl
MGI		 PMID:20637190 GO_REF:0000107 NCBI chr21:31,572,645...31,594,027
Ensembl chr21:44,855,437...44,876,862 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004056) Ensembl
MGI		 PMID:12004056 GO_REF:0000107 NCBI chr19:13,657,344...13,683,864
Ensembl chr19:14,385,191...14,406,205 		JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12004056) Ensembl
MGI		 PMID:12004056 GO_REF:0000107 NCBI chr17:62,448,718...62,488,493
Ensembl chr17:67,838,484...67,877,943 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299)
(PMID:10477299)		 UniProt PMID:10477299 MGI:1343990 NCBI chr 8:141,027,765...141,031,194 JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084457) Ensembl
MGI		 PMID:15084457 GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084457) Ensembl
MGI		 PMID:15084457 GO_REF:0000107 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:46,321,075...46,328,865
Ensembl chr20:47,384,818...47,390,733 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11060034), (PMID:9799237) Ensembl
MGI		 PMID:9799237 PMID:11060034 GO_REF:0000107 NCBI chr 6:42,763,099...42,773,332
Ensembl chr 6:44,057,192...44,066,768 		JBrowse link
G TBX19 T-box transcription factor 19 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:147,492,846...147,524,740 JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9490412)
(PMID:15755804)		 Ensembl
MGI		 PMID:9490412 PMID:15755804 GO_REF:0000107 Ensembl chr16:30,460,305...30,467,070 JBrowse link
G TBXT T-box transcription factor T involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595 		JBrowse link
G TLX2 T cell leukemia homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9550720) Ensembl
MGI		 PMID:9550720 GO_REF:0000107 NCBI chr2A:74,581,111...74,583,425
Ensembl chr2A:76,087,113...76,089,324 		JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843411) Ensembl
MGI		 PMID:15843411 GO_REF:0000107 NCBI chr18:4,883,688...4,950,963
Ensembl chr18:7,164,091...7,229,271 		JBrowse link
G TXNRD1 thioredoxin reductase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17697936) Ensembl
MGI		 PMID:17697936 GO_REF:0000107 NCBI chr12:101,862,703...101,925,104
Ensembl chr12:105,187,128...105,321,112 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259)
(PMID:19841259)		 UniProt PMID:19841259 MGI:4397730 NCBI chr 1:67,336,009...67,470,265
Ensembl chr 1:69,318,742...69,425,652 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 Ensembl chr16:278,239...337,891 JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11287184) Ensembl
MGI		 PMID:11287184 GO_REF:0000107 NCBI chr 1:15,259,915...15,292,983
Ensembl chr 1:16,253,513...16,284,787 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14511481) Ensembl
MGI		 PMID:14511481 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15677567), (PMID:18550854)
(PMID:19182774)		 Ensembl
MGI		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 NCBI chr 1:46,524,484...46,540,595
Ensembl chr 1:48,042,594...48,048,622 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124112) Ensembl
MGI		 PMID:11124112 GO_REF:0000107 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chr11:6,742,862...6,744,260 JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7720590) Ensembl
MGI		 PMID:7720590 GO_REF:0000107 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chr12:22,954,946...23,096,623 JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7799920) Ensembl
MGI		 PMID:7799920 GO_REF:0000107 NCBI chr 7:42,538,591...42,556,578
Ensembl chr 7:42,580,730...42,595,097 		JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:60,935,452...61,040,726
Ensembl chr 5:62,555,370...62,659,720 		JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,145,974...44,181,343
Ensembl chr17:49,019,892...49,055,245 		JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:15,838,320...16,045,206
Ensembl chr10:16,114,999...16,321,360 		JBrowse link
G ITGB1 integrin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,023,573...33,081,384
Ensembl chr10:33,608,978...33,644,031 		JBrowse link
G ITGB3 integrin subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,134,450...10,194,596
Ensembl chr17:10,353,111...10,392,382 		JBrowse link
G ITGB4 integrin subunit beta 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,671,252...69,708,520
Ensembl chr17:75,222,376...75,259,401 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029 		JBrowse link
G KDM6B lysine demethylase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,878,783...7,889,372
Ensembl chr17:7,866,973...7,874,937 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NANOG Nanog homeobox acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:16801560) MGI PMID:16801560 NCBI chr12:7,913,037...7,919,715 JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426 		JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801560) Ensembl
MGI		 PMID:16801560 GO_REF:0000107 NCBI chr 4:137,822,269...137,899,700
Ensembl chr 4:149,481,836...149,558,135 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7657163) Ensembl
MGI		 PMID:7657163 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:67,728,057...68,060,069
Ensembl chr 8:69,387,769...69,551,829 		JBrowse link
G HOXA11 homeobox A11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17462603) Ensembl
MGI		 PMID:17462603 GO_REF:0000107 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9490412) Ensembl
MGI		 PMID:9490412 GO_REF:0000107 Ensembl chr16:30,460,305...30,467,070 JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17462603) Ensembl
MGI		 PMID:17462603 GO_REF:0000107 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOC4 exocyst complex component 4 acts_upstream_of_or_within ISO (PMID:9441674) MGI PMID:9441674 NCBI chr 7:125,226,107...126,030,486
Ensembl chr 7:137,734,400...138,536,214 		JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3047050|PMID:15196959)
(PMID:15196959)
(PMID:11562355)		 UniProt
MGI		 PMID:11562355 PMID:15196959 MGI:3047050 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:11562355) MGI PMID:11562355 NCBI chr16:67,237,476...67,239,545 JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10090727) Ensembl
MGI		 PMID:10090727 GO_REF:0000107 NCBI chr12:118,562,308...118,584,596
Ensembl chr12:121,932,671...121,955,911 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10090727) Ensembl
MGI		 PMID:10090727 GO_REF:0000107 NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980 		JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr11:71,239,781...71,263,915
Ensembl chr11:74,540,169...74,560,024 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25813538) Ensembl
MGI		 PMID:25813538 GO_REF:0000107 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chr16:67,237,476...67,239,545 JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9126297) Ensembl
MGI		 PMID:9126297 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 involved_in ISO (PMID:30599359) ARUK-UCL PMID:30599359 NCBI chr 6:119,213,513...119,227,617 JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr 8:37,713,133...37,773,098
Ensembl chr 8:34,890,147...34,948,904 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16786
    developmental process 6642
      anatomical structure formation involved in morphogenesis 1253
        formation of primary germ layer 132
          mesoderm formation 76
            axial mesoderm formation + 3
            intermediate mesoderm formation + 1
            lateral mesoderm formation + 4
            mesoderm migration involved in gastrulation 2
            mesodermal cell differentiation + 32
            negative regulation of mesoderm formation 0
            paraxial mesoderm formation + 9
            positive regulation of mesoderm formation 0
            regulation of mesoderm formation + 0
Path 2
Term Annotations click to browse term
  biological_process 16786
    developmental process 6642
      anatomical structure development 6240
        multicellular organism development 5022
          embryo development 1313
            embryonic morphogenesis 682
              gastrulation 203
                formation of primary germ layer 132
                  mesoderm formation 76
                    axial mesoderm formation + 3
                    intermediate mesoderm formation + 1
                    lateral mesoderm formation + 4
                    mesoderm migration involved in gastrulation 2
                    mesodermal cell differentiation + 32
                    negative regulation of mesoderm formation 0
                    paraxial mesoderm formation + 9
                    positive regulation of mesoderm formation 0
                    regulation of mesoderm formation + 0
paths to the root