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ONTOLOGY REPORT - ANNOTATIONS


Term:formation of primary germ layer
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Accession:GO:0001704 term browser browse the term
Definition:The formation of the ectoderm, mesoderm and endoderm during gastrulation.


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formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:3789431|PMID:18448678) MGI PMID:18448678 MGI:3789431 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104
JBrowse link
G ATOH8 atonal bHLH transcription factor 8 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:85,753,786...85,791,383
Ensembl chr 2:85,751,344...85,791,383
JBrowse link
G KIF16B kinesin family member 16B involved_in ISS UniProt GO_REF:0000024 NCBI chr20:16,272,104...16,573,457
Ensembl chr20:16,272,104...16,573,448
Ensembl chr20:16,272,104...16,573,448
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO (MGI:894149|PMID:9230313) MGI PMID:9230313 MGI:894149 NCBI chr16:287,440...355,226
Ensembl chr16:287,440...352,723
JBrowse link
G EPHA2 EPH receptor A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934524|PMID:11287184) Ensembl
MGI
PMID:11287184 GO_REF:0000107 MGI:1934524 NCBI chr 1:16,124,337...16,156,104
Ensembl chr 1:16,124,337...16,156,069
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481) Ensembl
MGI
PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ETV2 ETS variant transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4415813|PMID:18462699) Ensembl
MGI
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr19:35,641,175...35,644,871
Ensembl chr19:35,641,745...35,644,871
JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 involved_in IMP (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:1344734|PMID:10498685) MGI PMID:10498685 MGI:1344734 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,581,005...22,585,455
Ensembl chr20:22,581,005...22,585,455
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1344734|PMID:10498685) UniProt
MGI
PMID:10498685 GO_REF:0000024 MGI:1344734 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELF5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO (MGI:5616945|PMID:25446535) MGI PMID:25446535 MGI:5616945 NCBI chr11:34,478,791...34,513,794
Ensembl chr11:34,478,793...34,525,193
Ensembl chr11:34,478,793...34,525,193
Ensembl chr11:34,478,793...34,525,193
JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5616945|PMID:25446535) Ensembl
MGI
PMID:25446535 GO_REF:0000107 MGI:5616945 NCBI chr21:38,805,183...38,824,955
Ensembl chr21:38,805,183...38,824,955
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:5498579|PMID:23824574)
(MGI:3625553|PMID:12194849)
MGI PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G DUSP1 dual specificity phosphatase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:172,768,096...172,771,195
Ensembl chr 5:172,768,096...172,771,195
JBrowse link
G DUSP2 dual specificity phosphatase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:96,143,166...96,145,468
Ensembl chr 2:96,143,169...96,145,440
JBrowse link
G DUSP4 dual specificity phosphatase 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:29,333,064...29,350,684
Ensembl chr 8:29,333,064...29,350,684
JBrowse link
G DUSP5 dual specificity phosphatase 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:110,497,907...110,511,533
Ensembl chr10:110,497,907...110,511,533
JBrowse link
G EOMES eomesodermin involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279) UniProt
MGI
PMID:21245162 PMID:21822279 GO_REF:0000024 MGI:4887279 MGI:5293253 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chr 8:11,676,931...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3487194|PMID:15355796) UniProt
MGI
PMID:15355796 GO_REF:0000024 MGI:3487194 NCBI chr17:36,937,475...36,944,612
Ensembl chr17:36,936,785...36,944,612
JBrowse link
G MIXL1 Mix paired-like homeobox involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3695524|PMID:17151016)
GO_Central
MGI
PMID:17151016 PMID:21873635 MGI:3695524 NCBI chr 1:226,223,664...226,227,060
Ensembl chr 1:226,223,618...226,227,060
Ensembl chr 1:226,223,618...226,227,060
JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4415813|PMID:18462699) Ensembl
MGI
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5293253|PMID:21822279) Ensembl
MGI
PMID:21822279 GO_REF:0000107 MGI:5293253 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in IDA (PMID:18682240) UniProt PMID:18682240 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
G SOX7 SRY-box transcription factor 7 involved_in IDA (PMID:18682240) UniProt PMID:18682240 NCBI chr 8:10,723,768...10,730,511
Ensembl chr 8:10,723,768...10,730,511
JBrowse link
G TBX20 T-box transcription factor 20 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 7:35,199,936...35,254,100
Ensembl chr 7:35,202,430...35,254,100
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr17:77,958,853...78,108,835
Ensembl chr17:77,959,240...78,108,835
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 1:102,876,473...103,108,580
Ensembl chr 1:102,876,467...103,108,872
JBrowse link
G COL12A1 collagen type XII alpha 1 chain involved_in IEP
IBA
(PMID:23154389)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:23154389 NCBI chr 6:75,084,326...75,206,262
Ensembl chr 6:75,084,326...75,206,053
Ensembl chr 6:75,084,326...75,206,053
JBrowse link
G COL4A2 collagen type IV alpha 2 chain involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr13:110,307,284...110,513,209
Ensembl chr13:110,305,812...110,513,209
JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr21:45,981,770...46,005,048
Ensembl chr21:45,981,769...46,005,050
Ensembl chr21:45,981,769...46,005,050
JBrowse link
G COL7A1 collagen type VII alpha 1 chain involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:48,564,073...48,595,329
Ensembl chr 3:48,564,073...48,595,267
Ensembl chr 3:48,564,073...48,595,267
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:99,638,594...99,799,217
Ensembl chr 3:99,638,475...99,799,226
JBrowse link
G FN1 fibronectin 1 involved_in IDA (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:215,360,862...215,436,167
Ensembl chr 2:215,360,440...215,436,073
JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:1315079|PMID:9832509) MGI PMID:9832509 MGI:1315079 NCBI chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IMP (PMID:17624332) UniProt PMID:17624332 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HSBP1 heat shock factor binding protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5553204|PMID:24380799) Ensembl
MGI
PMID:24380799 GO_REF:0000107 MGI:5553204 NCBI chr16:83,807,978...83,819,737
Ensembl chr16:83,807,978...83,819,737
JBrowse link
G INHBA inhibin subunit beta A involved_in IDA (PMID:21828274) BHF-UCL PMID:21828274 NCBI chr 7:41,685,101...41,710,532
Ensembl chr 7:41,667,168...41,705,834
JBrowse link
G ITGA4 integrin subunit alpha 4 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:181,457,205...181,538,940
Ensembl chr 2:181,457,202...181,538,940
JBrowse link
G ITGA5 integrin subunit alpha 5 involved_in IMP (PMID:23154389) UniProt PMID:23154389 NCBI chr12:54,395,261...54,419,266
Ensembl chr12:54,395,261...54,419,266
JBrowse link
G ITGA7 integrin subunit alpha 7 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr12:55,684,568...55,716,037
Ensembl chr12:55,684,568...55,716,043
JBrowse link
G ITGAV integrin subunit alpha V involved_in IMP (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:186,590,056...186,680,901
Ensembl chr 2:186,590,056...186,680,901
JBrowse link
G ITGB2 integrin subunit beta 2 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr21:44,885,949...44,928,815
Ensembl chr21:44,885,953...44,931,989
JBrowse link
G ITGB5 integrin subunit beta 5 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:124,761,948...124,901,418
Ensembl chr 3:124,761,948...124,901,418
JBrowse link
G LAMA3 laminin subunit alpha 3 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr18:23,689,443...23,955,066
Ensembl chr18:23,689,443...23,956,222
Ensembl chr18:23,689,443...23,956,222
JBrowse link
G LAMB1 laminin subunit beta 1 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 7:107,923,799...108,003,176
Ensembl chr 7:107,923,799...108,003,187
Ensembl chr 7:107,923,799...108,003,187
JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 1:209,614,870...209,652,467
Ensembl chr 1:209,614,870...209,652,425
JBrowse link
G MIXL1 Mix paired-like homeobox involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 1:226,223,664...226,227,060
Ensembl chr 1:226,223,618...226,227,060
Ensembl chr 1:226,223,618...226,227,060
JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr14:22,836,585...22,847,758
Ensembl chr14:22,836,560...22,849,027
Ensembl chr14:22,836,560...22,849,027
JBrowse link
G MMP15 matrix metallopeptidase 15 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr16:58,025,754...58,046,901
Ensembl chr16:58,025,754...58,046,901
JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr16:55,478,830...55,506,691
Ensembl chr16:55,389,700...55,506,691
JBrowse link
G MMP8 matrix metallopeptidase 8 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr11:102,711,796...102,724,967
Ensembl chr11:102,711,796...102,727,050
JBrowse link
G MMP9 matrix metallopeptidase 9 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G NODAL nodal growth differentiation factor involved_in IMP (PMID:21741376) BHF-UCL PMID:21741376 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:47,016,431...47,164,113
Ensembl chr 3:47,016,429...47,164,113
Ensembl chr 3:47,016,429...47,164,113
JBrowse link
G VTN vitronectin involved_in IDA (PMID:23154389) UniProt PMID:23154389 NCBI chr17:28,367,284...28,370,307
Ensembl chr17:28,367,284...28,373,091
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:193,122,031...193,254,815
Ensembl chr 1:193,121,958...193,254,815
Ensembl chr 1:193,121,958...193,254,815
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3625553|PMID:12194849) Ensembl
MGI
PMID:12194849 GO_REF:0000107 MGI:3625553 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISS UniProt GO_REF:0000024 NCBI chr11:10,751,246...10,779,746
Ensembl chr11:10,751,246...10,801,625
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS UniProt GO_REF:0000024 NCBI chr15:51,938,024...51,971,798
Ensembl chr15:51,938,025...51,971,778
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS UniProt GO_REF:0000024 NCBI chr19:39,385,629...39,391,106
Ensembl chr19:39,385,629...39,391,154
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS UniProt GO_REF:0000024 NCBI chr15:41,417,104...41,483,563
Ensembl chr15:41,408,408...41,483,563
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA6 GATA binding protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4442295|PMID:20308546) Ensembl
MGI
PMID:20308546 GO_REF:0000107 MGI:4442295 NCBI chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4442295|PMID:20308546) Ensembl
MGI
PMID:20308546 GO_REF:0000107 MGI:4442295 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4887279|PMID:21245162)
GO_Central
MGI
PMID:21245162 PMID:21873635 MGI:4887279 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,105
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3580923|PMID:15677567), (MGI:3807430|PMID:18550854)
(MGI:3838687|PMID:19182774)
Ensembl
MGI
PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 MGI:3580923 MGI:3807430 MGI:3838687 NCBI chr 1:47,216,290...47,232,389
Ensembl chr 1:47,216,290...47,232,220
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IDA (PMID:10021330) UniProt PMID:10021330 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
lateral mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TBX20 T-box transcription factor 20 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 7:35,199,936...35,254,100
Ensembl chr 7:35,202,430...35,254,100
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928688|PMID:11124112) Ensembl
MGI
PMID:11124112 GO_REF:0000107 MGI:1928688 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345529|PMID:10479450)
(MGI:3695845|PMID:17117439)
Ensembl
MGI
PMID:10479450 PMID:17117439 GO_REF:0000107 MGI:1345529 MGI:3695845 NCBI chr 2:157,736,446...157,876,330
Ensembl chr 2:157,736,444...157,876,330
Ensembl chr 2:157,736,444...157,876,330
JBrowse link
G ARMC5 armadillo repeat containing 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5913685|PMID:28911199) Ensembl
MGI
PMID:28911199 GO_REF:0000107 MGI:5913685 NCBI chr16:31,458,273...31,467,167
Ensembl chr16:31,458,080...31,467,166
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699), (MGI:70235|PMID:7799920) MGI PMID:7799920 PMID:18462699 MGI:4415813 MGI:70235 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578079|PMID:15843411) Ensembl
MGI
PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3722226|PMID:17699604) Ensembl
MGI
PMID:17699604 GO_REF:0000107 MGI:3722226 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,838
Ensembl chr10:86,756,601...86,932,838
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1855789|PMID:10772805) BHF-UCL
MGI
PMID:10772805 GO_REF:0000024 MGI:1855789 NCBI chr 2:202,376,310...202,567,751
Ensembl chr 2:202,376,327...202,567,751
JBrowse link
G CHRD chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chr 3:184,380,073...184,390,739
Ensembl chr 3:184,380,073...184,390,736
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G ECSIT ECSIT signaling integrator acts_upstream_of_or_within ISO (MGI:2682456|PMID:14633973) MGI PMID:14633973 MGI:2682456 NCBI chr19:11,505,929...11,529,134
Ensembl chr19:11,505,929...11,529,172
JBrowse link
G EOMES eomesodermin involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
(MGI:1354065|PMID:10716450)
(PMID:21873635)
UniProt
MGI
GO_Central
PMID:10716450 PMID:21873635 GO_REF:0000024 MGI:1354065 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G ETV2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr19:35,641,175...35,644,871
Ensembl chr19:35,641,745...35,644,871
JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608483|PMID:16236767) Ensembl
MGI
PMID:16236767 GO_REF:0000107 MGI:3608483 NCBI chr11:44,095,678...44,251,962
Ensembl chr11:44,095,673...44,251,981
Ensembl chr11:44,095,673...44,251,981
JBrowse link
G GPI glucose-6-phosphate isomerase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:84014|PMID:8922529) Ensembl
MGI
PMID:8922529 GO_REF:0000107 MGI:84014 NCBI chr19:34,353,330...34,402,413
Ensembl chr19:34,359,480...34,402,413
JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1197801|PMID:9500550) Ensembl
MGI
PMID:9500550 GO_REF:0000107 MGI:1197801 NCBI chr 5:154,474,972...154,478,227
Ensembl chr 5:154,474,972...154,478,227
JBrowse link
G INHBA inhibin subunit beta A acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) MGI PMID:7799920 MGI:70235 NCBI chr 7:41,685,101...41,710,532
Ensembl chr 7:41,667,168...41,705,834
JBrowse link
G MACF1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (MGI:3640889|PMID:16815997) MGI PMID:16815997 MGI:3640889 NCBI chr 1:39,084,167...39,487,138
Ensembl chr 1:39,081,316...39,487,177
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754
JBrowse link
G MSGN1 mesogenin 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:17,816,460...17,817,798
Ensembl chr 2:17,816,460...17,817,798
JBrowse link
G NF2 neurofibromin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:707944|PMID:9171370) Ensembl
MGI
PMID:9171370 GO_REF:0000107 MGI:707944 NCBI chr22:29,603,556...29,698,600
Ensembl chr22:29,603,556...29,698,598
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4415813|PMID:18462699) Ensembl
MGI
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (MGI:3042044|PMID:13129926) MGI PMID:13129926 MGI:3042044 NCBI chr 9:99,821,885...99,866,893
Ensembl chr 9:99,821,855...99,866,891
JBrowse link
G POFUT2 protein O-fucosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4838381|PMID:20637190) Ensembl
MGI
PMID:20637190 GO_REF:0000107 MGI:4838381 NCBI chr21:45,263,928...45,287,914
Ensembl chr21:45,263,928...45,287,898
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2183097|PMID:12004056) Ensembl
MGI
PMID:12004056 GO_REF:0000107 MGI:2183097 NCBI chr19:14,091,688...14,117,762
Ensembl chr19:14,091,688...14,118,084
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2183097|PMID:12004056) Ensembl
MGI
PMID:12004056 GO_REF:0000107 MGI:2183097 NCBI chr17:68,413,623...68,551,316
Ensembl chr17:68,511,780...68,551,319
JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:144,265,060...144,268,483
Ensembl chr 8:144,266,453...144,268,481
JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3039049|PMID:15084457) UniProt
MGI
PMID:15084457 GO_REF:0000024 MGI:3039049 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3039049|PMID:15084457) Ensembl
MGI
PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,169
Ensembl chr15:67,063,763...67,195,169
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1312998|PMID:9799237), (MGI:1927031|PMID:11060034) Ensembl
MGI
PMID:9799237 PMID:11060034 GO_REF:0000107 MGI:1312998 MGI:1927031 NCBI chr 6:43,171,269...43,181,506
Ensembl chr 6:43,171,269...43,181,506
JBrowse link
G TBX19 T-box transcription factor 19 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:168,280,877...168,314,426
Ensembl chr 1:168,280,877...168,314,426
JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3577662|PMID:15755804)
(MGI:2447720|PMID:9490412)
Ensembl
MGI
PMID:9490412 PMID:15755804 GO_REF:0000107 MGI:2447720 MGI:3577662 NCBI chr16:30,085,793...30,091,927
Ensembl chr16:30,085,793...30,091,924
Ensembl chr16:30,085,793...30,091,924
JBrowse link
G TBXT T-box transcription factor T involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
G TLX2 T cell leukemia homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1267265|PMID:9550720) Ensembl
MGI
PMID:9550720 GO_REF:0000107 MGI:1267265 NCBI chr 2:74,514,450...74,517,148
Ensembl chr 2:74,513,463...74,517,148
JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578079|PMID:15843411) Ensembl
MGI
PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chr18:9,334,773...9,402,420
Ensembl chr18:9,334,767...9,402,420
JBrowse link
G TXNRD1 thioredoxin reductase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3721365|PMID:17697936) Ensembl
MGI
PMID:17697936 GO_REF:0000107 MGI:3721365 NCBI chr12:104,215,779...104,350,307
Ensembl chr12:104,215,779...104,350,307
JBrowse link
G WLS Wnt ligand secretion mediator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:68,098,459...68,233,018
Ensembl chr 1:68,098,473...68,233,120
JBrowse link
G WNT3 Wnt family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1341483|PMID:10431240) Ensembl
MGI
PMID:10431240 GO_REF:0000107 MGI:1341483 NCBI chr17:46,762,506...46,818,692
Ensembl chr17:46,762,506...46,833,154
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APELA apelin receptor early endogenous ligand involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:164,877,023...164,899,063
Ensembl chr 4:164,877,178...164,898,965
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821807|PMID:18794329) Ensembl
MGI
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:71468|PMID:7720590) Ensembl
MGI
PMID:7720590 GO_REF:0000107 MGI:71468 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) MGI PMID:7799920 MGI:70235 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA
ISO
Ensembl
RGD
PMID:7803853 GO_REF:0000107 RGD:632663 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,334...121,598,458
Ensembl chr10:121,478,334...121,598,458
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IMP (PMID:17624332) UniProt PMID:17624332 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G INHBA inhibin subunit beta A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:70235|PMID:7799920) Ensembl
MGI
PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chr 7:41,685,101...41,710,532
Ensembl chr 7:41,667,168...41,705,834
JBrowse link
G ITGA2 integrin subunit alpha 2 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr 5:52,989,352...53,094,779
Ensembl chr 5:52,989,340...53,094,779
JBrowse link
G ITGA3 integrin subunit alpha 3 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr17:50,056,065...50,090,481
Ensembl chr17:50,055,968...50,090,481
JBrowse link
G ITGA8 integrin subunit alpha 8 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr10:15,513,954...15,720,329
Ensembl chr10:15,513,954...15,719,922
JBrowse link
G ITGB1 integrin subunit beta 1 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr10:32,900,318...32,958,230
Ensembl chr10:32,900,318...33,005,792
Ensembl chr10:32,900,318...33,005,792
JBrowse link
G ITGB3 integrin subunit beta 3 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr17:47,253,827...47,313,743
Ensembl chr17:47,253,846...47,313,735
Ensembl chr17:47,253,846...47,313,735
Ensembl chr17:47,253,846...47,313,735
JBrowse link
G ITGB4 integrin subunit beta 4 involved_in IEP (PMID:23154389) UniProt PMID:23154389 NCBI chr17:75,721,339...75,757,819
Ensembl chr17:75,721,328...75,757,818
JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5448135|PMID:22949634) Ensembl
MGI
PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chr  X:44,873,182...45,112,779
Ensembl chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
JBrowse link
G KDM6B lysine demethylase 6B involved_in ISS (PMID:23856522) BHF-UCL PMID:23856522 NCBI chr17:7,834,210...7,854,796
Ensembl chr17:7,839,904...7,854,796
Ensembl chr17:7,839,904...7,854,796
JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NANOG Nanog homeobox acts_upstream_of_or_within ISO (MGI:3654744|PMID:16801560) MGI PMID:16801560 MGI:3654744 NCBI chr12:7,789,402...7,799,146
Ensembl chr12:7,787,794...7,799,146
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731
JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3654744|PMID:16801560) Ensembl
MGI
PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chr 4:145,481,306...145,559,176
Ensembl chr 4:145,481,194...145,559,176
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:76261|PMID:7657163) Ensembl
MGI
PMID:7657163 GO_REF:0000107 MGI:76261 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G KLF4 Kruppel like factor 4 involved_in TAS (PMID:8940147) PINC PMID:8940147 NCBI chr 9:107,484,852...107,489,769
Ensembl chr 9:107,484,852...107,490,482
JBrowse link
G TRIM15 tripartite motif containing 15 involved_in TAS (PMID:10207104) PINC PMID:10207104 NCBI chr 6:30,163,546...30,172,693
Ensembl chr 6:30,163,206...30,172,693
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:71,197,433...71,548,104
Ensembl chr 8:71,197,433...71,592,025
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 involved_in TAS (PMID:9020840) PINC PMID:9020840 NCBI chr20:46,894,843...47,188,844
Ensembl chr20:46,894,624...47,188,844
JBrowse link
G HOXA11 homeobox A11 involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:27,181,157...27,185,232
Ensembl chr 7:27,181,157...27,185,232
Ensembl chr 7:27,181,157...27,185,232
JBrowse link
G PAX2 paired box 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr10:100,735,396...100,829,944
Ensembl chr10:100,735,603...100,829,941
Ensembl chr10:100,735,603...100,829,941
Ensembl chr10:100,735,603...100,829,941
JBrowse link
G SIX2 SIX homeobox 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:45,005,182...45,009,645
Ensembl chr 2:45,005,182...45,009,452
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZD7 frizzled class receptor 7 involved_in IMP (PMID:18681827) BHF-UCL PMID:18681827 NCBI chr 2:202,033,855...202,038,441
Ensembl chr 2:202,034,587...202,038,445
Ensembl chr 2:202,034,587...202,038,445
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain involved_in IDA (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:134,641,789...134,844,843
Ensembl chr 9:134,641,803...134,844,843
Ensembl chr 9:134,641,803...134,844,843
JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in IDA (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:189,031,898...189,225,301
Ensembl chr 2:189,031,898...189,225,312
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr15:89,734,772...89,751,309
Ensembl chr15:89,748,661...89,751,310
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3711603|PMID:17462603) Ensembl
MGI
PMID:17462603 GO_REF:0000107 MGI:3711603 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXOC4 exocyst complex component 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1195048|PMID:9441674) Ensembl
MGI
PMID:9441674 GO_REF:0000107 MGI:1195048 NCBI chr 7:133,253,075...134,067,137
Ensembl chr 7:133,253,073...134,066,589
JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2150572|PMID:11562355) Ensembl
MGI
PMID:11562355 GO_REF:0000107 MGI:2150572 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (MGI:2150572|PMID:11562355) MGI PMID:11562355 MGI:2150572 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr12:120,977,683...121,002,512
Ensembl chr12:120,978,543...121,002,512
JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,422...3,243,960
Ensembl chr 4:3,041,422...3,243,960
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr11:76,186,325...76,210,842
Ensembl chr11:76,186,325...76,210,736
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:86990|PMID:9106663) Ensembl
MGI
PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:86727|PMID:9126297) Ensembl
MGI
PMID:9126297 GO_REF:0000107 MGI:86727 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone involved_in IMP (PMID:23595991) UniProt PMID:23595991 NCBI chr 5:135,334,381...135,401,998
Ensembl chr 5:135,333,900...135,399,914
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GJA1 gap junction protein alpha 1 involved_in IMP (PMID:30599359) ARUK-UCL PMID:30599359 NCBI chr 6:121,435,646...121,449,727
Ensembl chr 6:121,435,595...121,449,727
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3A Wnt family member 3A involved_in IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr 1:228,006,998...228,067,113
Ensembl chr 1:228,006,998...228,061,271
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IDA (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702797|PMID:16943278) Ensembl
MGI
PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,838
Ensembl chr10:86,756,601...86,932,838
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    developmental process 7480
      anatomical structure formation involved in morphogenesis 1276
        formation of primary germ layer 131
          cell fate commitment involved in formation of primary germ layer + 33
          ectoderm formation + 6
          endoderm formation + 55
          mesoderm formation + 79
Path 2
Term Annotations click to browse term
  biological_process 18670
    developmental process 7480
      anatomical structure development 6902
        multicellular organism development 6384
          embryo development 1330
            embryonic morphogenesis 703
              gastrulation 208
                formation of primary germ layer 131
                  cell fate commitment involved in formation of primary germ layer + 33
                  ectoderm formation + 6
                  endoderm formation + 55
                  mesoderm formation + 79
paths to the root