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ONTOLOGY REPORT - ANNOTATIONS


Term:gastrulation with mouth forming second
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Accession:GO:0001702 term browser browse the term
Definition:A gastrulation process in which the initial invagination becomes the anus and the mouth forms second.
Synonyms:exact_synonym: deuterostomic gastrulation
 alt_id: GO:0010003;   GO:0048276
 only_in_taxon: NCBITaxon:33511 ! Deuterostomia


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gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Acvr1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1931734|MGI:3696672 (MGI:3695845|PMID:17117439)
Ensembl
RGD
PMID:17117439 GO_REF:0000107 MGI:3695845 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr2a activin A receptor type 2A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:87912 (MGI:1344152|PMID:10452853)
Ensembl
RGD
PMID:10452853 GO_REF:0000107 MGI:1344152 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:102806 (MGI:1344152|PMID:10452853)
Ensembl
RGD
PMID:10452853 GO_REF:0000107 MGI:1344152 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Amot angiomotin acts_upstream_of_or_within ISO MGI:2656627 (MGI:2655854|PMID:12676095) RGD PMID:12676095 MGI:2655854 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864
JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (MGI:2662951|PMID:12810603) RGD PMID:12810603 MGI:2662951 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857678 (MGI:77405|PMID:8582267)
Ensembl
RGD
PMID:8582267 GO_REF:0000107 MGI:77405 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 acts_upstream_of_or_within ISO MGI:4360072 (MGI:4359544|PMID:19701191) RGD PMID:19701191 MGI:4359544 NCBI chr 6:93,740,440...93,751,003
Ensembl chr 6:93,740,586...93,749,809
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179443 (MGI:87489|PMID:9136933) RGD PMID:9136933 MGI:87489 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:2449177 (MGI:2448170|PMID:12490556) RGD PMID:12490556 MGI:2448170 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857848 (MGI:3487194|PMID:15355796)
UniProt
RGD
PMID:15355796 GO_REF:0000024 MGI:3487194 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G LOC102554748 nidogen-2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1298218 (MGI:3045836|PMID:15142971)
RGD PMID:15142971, PMID:21873635 MGI:3045836, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315 (MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:3045836 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Nat8 N-acetyltransferase 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:2135831|PMID:11397015)
UniProt
RGD
PMID:11397015 GO_REF:0000024 MGI:2135831 NCBI chr 4:117,525,963...117,527,443 JBrowse link
G Nat8b N-acetyltransferase 8B involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,606,022...117,607,366
Ensembl chr 4:117,606,022...117,607,428
Ensembl chr 4:117,606,022...117,607,428
JBrowse link
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,582,779...117,589,464
Ensembl chr 4:117,582,781...117,589,464
Ensembl chr 4:117,582,781...117,589,464
JBrowse link
G Nat8f3 N-acetyltransferase 8 (GCN5-related) family member 3 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,488,089...117,492,315
Ensembl chr 4:117,490,035...117,490,721
JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,506,731...117,531,480
Ensembl chr 4:117,506,732...117,531,480
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:1856970 (MGI:3701544|PMID:14607953) RGD PMID:14607953 MGI:3701544 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 acts_upstream_of_or_within ISO MGI:2667262 (MGI:2664413|PMID:12805229) RGD PMID:12805229 MGI:2664413 NCBI chr17:9,840,859...9,955,391
Ensembl chr17:9,844,133...9,952,898
JBrowse link
G Plpp3 phospholipid phosphatase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2674217 (MGI:2669570|PMID:12925589)
Ensembl
RGD
PMID:12925589 GO_REF:0000107 MGI:2669570 NCBI chr 5:124,690,214...124,765,499
Ensembl chr 5:124,690,214...124,765,498
JBrowse link
G Rnf2 ring finger protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2653961 (MGI:2652937|PMID:12589020)
Ensembl
RGD
PMID:12589020 GO_REF:0000107 MGI:2652937 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857691|MGI:2656539|MGI:2668393 (MGI:3051711|PMID:15215210)
Ensembl
RGD
PMID:15215210 GO_REF:0000107 MGI:3051711 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Tenm4 teneurin transmembrane protein 4 acts_upstream_of_or_within ISO MGI:2449635 (MGI:3531238|PMID:15489520) RGD PMID:15489520 MGI:3531238 NCBI chr 1:161,183,858...161,885,094
Ensembl chr 1:161,401,527...161,880,923
JBrowse link
G Ugdh UDP-glucose 6-dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:2678264 (MGI:3577662|PMID:15755804)
(MGI:2675908|PMID:14505572)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14505572 PMID:15755804 GO_REF:0000024 GO_REF:0000107 MGI:2675908 MGI:3577662 NCBI chr14:44,479,614...44,502,845
Ensembl chr14:44,479,614...44,502,845
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 acts_upstream_of_or_within ISO MGI:2679766 (MGI:2679173|PMID:14560010) RGD PMID:14560010 MGI:2679173 NCBI chr 5:159,993,799...160,014,899
Ensembl chr 5:159,993,799...160,014,895
JBrowse link
epiboly involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5823085|PMID:27870829) RGD PMID:27870829 MGI:5823085 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO MGI:1891557 (MGI:5546318|PMID:23552073) RGD PMID:23552073 MGI:5546318 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495
JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857725 (MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:4999724|MGI:97359 (MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:4950786 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:98958 (MGI:4413372|PMID:19795512)
RGD PMID:19795512, PMID:21873635 MGI:4413372, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:96086 (MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:4950786 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2158696 (MGI:1312998|PMID:9799237) RGD PMID:9799237 MGI:1312998 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1298218 (MGI:4413372|PMID:19795512)
Ensembl
RGD
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      anatomical structure morphogenesis 2876
        embryonic morphogenesis 688
          gastrulation 206
            gastrulation with mouth forming second 38
              delamination involved in gastrulation with mouth forming second 0
              epiboly involved in gastrulation with mouth forming second + 1
              ingression involved in gastrulation with mouth forming second 1
              invagination involved in gastrulation with mouth forming second 0
              involution involved in gastrulation with mouth forming second 0
              primitive streak formation + 10
Path 2
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      anatomical structure development 6259
        multicellular organism development 5741
          embryo development 1306
            embryonic morphogenesis 688
              gastrulation 206
                gastrulation with mouth forming second 38
                  delamination involved in gastrulation with mouth forming second 0
                  epiboly involved in gastrulation with mouth forming second + 1
                  ingression involved in gastrulation with mouth forming second 1
                  invagination involved in gastrulation with mouth forming second 0
                  involution involved in gastrulation with mouth forming second 0
                  primitive streak formation + 10
paths to the root