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ONTOLOGY REPORT - ANNOTATIONS

Term:ureteric bud development
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Accession:GO:0001657 term browser browse the term
Definition:The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure.


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ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg2 arginase type II involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr12:79,177,562...79,203,075
Ensembl chr12:79,177,551...79,203,075 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (PMID:8623928) MGI PMID:8623928 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bdnf brain derived neurotrophic factor acts_upstream_of_or_within IDA (PMID:16018995) MGI PMID:16018995 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IDA
IMP		 (PMID:12631064) MGI PMID:12631064 GO_REF:0000008 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IMP (PMID:9693150) UniProt PMID:9693150 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Bmper BMP-binding endothelial regulator involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496 		JBrowse link
G Cat catalase involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:22733796 GO_REF:0000096 GO_REF:0000107 RGD:7206853 NCBI chr 2:103,284,249...103,315,498
Ensembl chr 2:103,284,194...103,315,505 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in IMP (PMID:22114682) UniProt PMID:22114682 NCBI chr 4:82,799,988...82,803,388
Ensembl chr 4:82,799,988...82,803,385 		JBrowse link
G Crlf1 cytokine receptor-like factor 1 involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr 8:70,945,798...70,956,728
Ensembl chr 8:70,945,808...70,956,731 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within IMP (PMID:17435047) MGI PMID:17435047 NCBI chr16:31,482,261...31,692,174
Ensembl chr16:31,482,261...31,693,947 		JBrowse link
G Epcam epithelial cell adhesion molecule involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr17:87,943,407...87,958,555
Ensembl chr17:87,943,407...87,958,557 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within IGI (PMID:16018995) MGI PMID:16018995 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IGI (PMID:16442091) MGI PMID:16442091 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IGI (PMID:16442091) MGI PMID:16442091 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IMP (PMID:10704385) MGI PMID:10704385 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:10704385) MGI PMID:10704385 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IMP (PMID:12729564) MGI PMID:12729564 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor acts_upstream_of_or_within IGI
IDA		 (PMID:15691764)
(PMID:15905075)		 MGI PMID:15691764 PMID:15905075 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Gsta3 glutathione S-transferase, alpha 3 involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr 1:21,310,837...21,335,885
Ensembl chr 1:21,310,813...21,335,885 		JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (PMID:15930111) MGI PMID:15930111 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Nog noggin acts_upstream_of_or_within IDA (PMID:12141440) MGI PMID:12141440 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within IMP (PMID:17537792) MGI PMID:17537792 NCBI chr 3:132,587,506...132,656,052
Ensembl chr 3:132,587,506...132,656,052 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (PMID:16790474) UniProt PMID:16790474 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within IGI (PMID:16018995) MGI PMID:16018995 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IMP (PMID:12195422) MGI PMID:12195422 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within IMP (PMID:12195422) MGI PMID:12195422 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Ret ret proto-oncogene acts_upstream_of_or_within IMP (PMID:12195422) MGI PMID:12195422 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in IMP
ISO		 (PMID:15130495) UniProt
GO_Central		 PMID:15130495 GO_REF:0000119 NCBI chr16:73,688,725...75,244,331
Ensembl chr16:73,688,727...74,889,765 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within IMP (PMID:11688560) MGI PMID:11688560 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
G Sdc1 syndecan 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15282150 GO_REF:0000107 RGD:1643132 NCBI chr12:8,821,396...8,843,716
Ensembl chr12:8,821,323...8,843,715 		JBrowse link
G Sdc4 syndecan 4 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15282150 GO_REF:0000107 RGD:1643132 NCBI chr 2:164,266,167...164,285,512
Ensembl chr 2:164,266,167...164,285,807 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
G Sim1 single-minded family bHLH transcription factor 1 involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr10:50,770,794...50,865,252
Ensembl chr10:50,770,850...50,865,248 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IGI
IMP		 (PMID:16018995)
(PMID:12783782)		 MGI PMID:12783782 PMID:16018995 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:48,138,633...48,465,077
Ensembl chr 5:48,140,480...48,465,075 		JBrowse link
G Smad1 SMAD family member 1 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr 8:80,065,024...80,126,057
Ensembl chr 8:80,065,024...80,126,147 		JBrowse link
G Smad2 SMAD family member 2 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad3 SMAD family member 3 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Smad5 SMAD family member 5 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr13:56,850,804...56,890,191
Ensembl chr13:56,850,823...56,890,190 		JBrowse link
G Smad6 SMAD family member 6 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr 9:63,860,358...63,929,374
Ensembl chr 9:63,860,358...63,929,341 		JBrowse link
G Smad7 SMAD family member 7 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006 		JBrowse link
G Smad9 SMAD family member 9 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr 3:54,662,873...54,709,162
Ensembl chr 3:54,663,003...54,708,678 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 acts_upstream_of_or_within IGI
IMP		 (PMID:15691764) MGI PMID:15691764 NCBI chr 3:37,694,096...37,698,748
Ensembl chr 3:37,694,096...37,698,747 		JBrowse link
G Tcf21 transcription factor 21 acts_upstream_of_or_within IMP (PMID:10572052) MGI PMID:10572052 NCBI chr10:22,693,162...22,696,042
Ensembl chr10:22,693,180...22,696,073 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IEP (PMID:14656760) UniProt PMID:14656760 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tshz3 teashirt zinc finger family member 3 acts_upstream_of_or_within IMP (PMID:18776146) MGI PMID:18776146 NCBI chr 7:36,397,543...36,472,978
Ensembl chr 7:36,397,543...36,472,978 		JBrowse link
G Vcan versican involved_in IEP (PMID:16545622) UniProt PMID:16545622 NCBI chr13:89,803,429...89,891,146
Ensembl chr13:89,803,431...89,890,628 		JBrowse link
G Wt1 WT1 transcription factor involved_in IMP (PMID:10322633) UniProt PMID:10322633 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961 		JBrowse link
branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf1 fibroblast growth factor 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr18:38,971,725...39,062,532
Ensembl chr18:38,971,726...39,062,525 		JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 acts_upstream_of_or_within IMP (PMID:23661704) MGI PMID:23661704 NCBI chr13:70,875,917...70,989,956
Ensembl chr13:70,875,921...70,989,930 		JBrowse link
G Agt angiotensinogen NOT|acts_upstream_of_or_within IMP
IDA		 (PMID:8675666)
(PMID:12657564)		 MGI PMID:8675666 PMID:12657564 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IGI
IDA		 (PMID:16672320)
(PMID:14699151)		 MGI PMID:14699151 PMID:16672320 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within IGI (PMID:15925496) MGI PMID:15925496 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 IGI
ISS
ISO		 (PMID:17522159) MGI
UniProt
GO_Central		 PMID:17522159 GO_REF:0000024 GO_REF:0000119 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Cd44 CD44 antigen acts_upstream_of_or_within IMP (PMID:10926769) MGI PMID:10926769 NCBI chr 2:102,641,486...102,732,014
Ensembl chr 2:102,641,486...102,732,010 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 NOT|involved_in IMP
ISO		 (PMID:17615577) UniProt
GO_Central		 PMID:17615577 GO_REF:0000096 NCBI chr  X:101,290,984...101,295,787
Ensembl chr  X:101,290,987...101,295,787 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 NOT|involved_in IMP (PMID:17615577) UniProt PMID:17615577 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:17537789) MGI PMID:17537789 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Ctnnbip1 catenin beta interacting protein 1 acts_upstream_of_or_within IMP (PMID:17803964) MGI PMID:17803964 NCBI chr 4:149,602,698...149,650,894
Ensembl chr 4:149,602,693...149,650,894 		JBrowse link
G Dchs1 dachsous cadherin related 1 acts_upstream_of_or_within IMP (PMID:21303848) MGI PMID:21303848 NCBI chr 7:105,402,196...105,437,562
Ensembl chr 7:105,402,197...105,436,861 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within IMP (PMID:16105026)
(PMID:17172448)
(PMID:17435047)		 MGI PMID:16105026 PMID:17172448 PMID:17435047 NCBI chr16:31,482,261...31,692,174
Ensembl chr16:31,482,261...31,693,947 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IMP (PMID:16937369) MGI PMID:16937369 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within IGI (PMID:12783782) MGI PMID:12783782 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within IMP (PMID:21303848) MGI PMID:21303848 NCBI chr 3:38,939,867...39,066,134
Ensembl chr 3:38,941,089...39,066,134 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:37,402,616...37,464,255
Ensembl chr 3:37,402,495...37,464,257 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (PMID:16049111) MGI PMID:16049111 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Foxd1 forkhead box D1 acts_upstream_of_or_within IDA (PMID:13678594) MGI PMID:13678594 NCBI chr13:98,490,753...98,493,213
Ensembl chr13:98,490,750...98,495,813 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor acts_upstream_of_or_within
involved_in		 IDA
IMP		 (PMID:13678594), (PMID:21281623)
(PMID:8657307)		 MGI
UniProt		 PMID:8657307 PMID:13678594 PMID:21281623 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (PMID:16396903) MGI PMID:16396903 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within IGI (PMID:15925496) MGI PMID:15925496 NCBI chr  X:51,361,303...51,702,851
Ensembl chr  X:51,361,303...51,702,827 		JBrowse link
G Greb1l growth regulation by estrogen in breast cancer-like acts_upstream_of_or_within IMP (PMID:29100091) MGI PMID:29100091 NCBI chr18:10,324,933...10,562,945
Ensembl chr18:10,325,177...10,562,940 		JBrowse link
G Gzf1 GDNF-inducible zinc finger protein 1 acts_upstream_of_or_within IMP (PMID:14522971) MGI PMID:14522971 NCBI chr 2:148,521,305...148,534,869
Ensembl chr 2:148,522,943...148,534,869 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (PMID:11493536) MGI PMID:11493536 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (PMID:11493536) MGI PMID:11493536 NCBI chr 2:74,509,902...74,517,360
Ensembl chr 2:74,509,901...74,517,360 		JBrowse link
G Hs3st3a1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 involved_in IGI (PMID:32017326) MGI PMID:32017326 NCBI chr11:64,326,158...64,413,667
Ensembl chr11:64,326,158...64,413,667 		JBrowse link
G Hs3st3b1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 involved_in IGI (PMID:32017326) MGI PMID:32017326 NCBI chr11:63,775,519...63,813,110
Ensembl chr11:63,776,618...63,813,116 		JBrowse link
G Ilk integrin linked kinase acts_upstream_of_or_within IDA (PMID:15831470) MGI PMID:15831470 NCBI chr 7:105,385,797...105,392,132
Ensembl chr 7:105,385,799...105,392,132 		JBrowse link
G Lama5 laminin, alpha 5 acts_upstream_of_or_within IMP (PMID:14568553) MGI PMID:14568553 NCBI chr 2:179,818,166...179,867,652
Ensembl chr 2:179,818,166...179,867,652 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IEP (PMID:7909549) UniProt PMID:7909549 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Myc myelocytomatosis oncogene involved_in IMP (PMID:19161241) UniProt PMID:19161241 NCBI chr15:61,857,190...61,862,210
Ensembl chr15:61,857,240...61,862,223 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within IMP (PMID:17537792) MGI PMID:17537792 NCBI chr 3:132,587,506...132,656,052
Ensembl chr 3:132,587,506...132,656,052 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISO
IMP
IGI		 (PMID:1337742)
(PMID:16672320)		 UniProt
MGI		 PMID:1337742 PMID:16672320 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611 		JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 acts_upstream_of_or_within IDA (PMID:12591246) MGI PMID:12591246 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839 		JBrowse link
G Pgf placental growth factor acts_upstream_of_or_within IDA (PMID:13678594) MGI PMID:13678594 NCBI chr12:85,213,413...85,224,087
Ensembl chr12:85,213,409...85,224,564 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685 		JBrowse link
G Pspn persephin acts_upstream_of_or_within IDA (PMID:9491986) MGI PMID:9491986 NCBI chr17:57,306,253...57,307,105
Ensembl chr17:57,306,457...57,307,018 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IMP (PMID:19809516) MGI PMID:19809516 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of
involved_in		 IMP (PMID:24550112)
(PMID:12482961)		 MGI
UniProt		 PMID:12482961 PMID:24550112 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (PMID:16396903) MGI PMID:16396903 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IGI (PMID:12783782) MGI PMID:12783782 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IGI (PMID:15925496) MGI PMID:15925496 NCBI chr18:73,767,861...73,836,862
Ensembl chr18:73,772,080...73,836,851 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in IEP (PMID:8787755) UniProt PMID:8787755 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tcf21 transcription factor 21 acts_upstream_of_or_within IMP (PMID:10572052)
(PMID:9507058)		 MGI PMID:9507058 PMID:10572052 NCBI chr10:22,693,162...22,696,042
Ensembl chr10:22,693,180...22,696,073 		JBrowse link
G Timeless timeless circadian clock 1 involved_in
acts_upstream_of_or_within		 ISO RGD
GO_Central
MGI		 PMID:10963667 GO_REF:0000008 GO_REF:0000096 RGD:2308864 NCBI chr10:128,067,932...128,088,810
Ensembl chr10:128,067,934...128,088,810 		JBrowse link
G Tmem59l transmembrane protein 59-like involved_in IMP (PMID:32017326) MGI PMID:32017326 NCBI chr 8:70,936,505...70,939,998
Ensembl chr 8:70,936,517...70,940,008 		JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 acts_upstream_of_or_within IGI (PMID:16054034) MGI PMID:16054034 NCBI chr15:98,687,738...98,691,711
Ensembl chr15:98,687,738...98,691,718 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IMP (PMID:16054034) MGI PMID:16054034 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
G Wnt6 wingless-type MMTV integration site family, member 6 acts_upstream_of_or_within IGI (PMID:11948913) MGI PMID:11948913 NCBI chr 1:74,793,499...74,824,481
Ensembl chr 1:74,811,051...74,824,481 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP
IGI		 (PMID:16054034) MGI PMID:16054034 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
G Wt1 WT1 transcription factor involved_in IMP
ISO		 (PMID:10101119) UniProt
GO_Central		 PMID:10101119 GO_REF:0000119 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961 		JBrowse link
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in IMP (PMID:15634693) UniProt PMID:15634693 NCBI chr13:98,490,753...98,493,213
Ensembl chr13:98,490,750...98,495,813 		JBrowse link
mesenchymal cell proliferation involved in ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in IMP (PMID:15925496) UniProt PMID:15925496 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Gpc3 glypican 3 involved_in IMP (PMID:15925496) UniProt PMID:15925496 NCBI chr  X:51,361,303...51,702,851
Ensembl chr  X:51,361,303...51,702,827 		JBrowse link
metanephric part of ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 involved_in IEP (PMID:18618131) UniProt PMID:18618131 NCBI chr 4:15,881,264...15,906,709
Ensembl chr 4:15,881,264...15,908,064 		JBrowse link
G Foxj1 forkhead box J1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685 		JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 IGI
ISO
IDA		 (PMID:21281623)
(PMID:15634693)		 MGI
GO_Central
UniProt		 PMID:15634693 PMID:21281623 GO_REF:0000119 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 involved_in IDA (PMID:22194864) UniProt PMID:22194864 NCBI chr 6:67,511,043...67,512,806
Ensembl chr 6:67,511,046...67,512,780 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (PMID:19112489) UniProt PMID:19112489 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (PMID:19112489) UniProt PMID:19112489 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO GO_Central GO_REF:0000119 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445 		JBrowse link
G Agtr1a angiotensin II receptor, type 1a involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000096 GO_REF:0000107 NCBI chr13:30,520,339...30,566,850
Ensembl chr13:30,520,424...30,566,850 		JBrowse link
G Agtr1b angiotensin II receptor, type 1b involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000096 GO_REF:0000107 NCBI chr 3:20,368,637...20,421,341
Ensembl chr 3:20,368,637...20,421,341 		JBrowse link
G Agtr2 angiotensin II receptor, type 2 involved_in ISO
IMP		 (PMID:18607644) GO_Central
UniProt		 PMID:18607644 GO_REF:0000096 NCBI chr  X:21,350,863...21,355,072
Ensembl chr  X:21,350,783...21,355,403 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO GO_Central GO_REF:0000096 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in ISO
IBA
ISS
IMP		 (PMID:17229286) GO_Central
UniProt		 PMID:17229286 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in		 IDA
IGI		 (PMID:21281623)
(PMID:17522159)		 MGI
UniProt		 PMID:17522159 PMID:21281623 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Hoxb7 homeobox B7 involved_in IMP (PMID:17881463) UniProt PMID:17881463 NCBI chr11:96,176,431...96,180,989
Ensembl chr11:96,177,449...96,180,988 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 involved_in IMP (PMID:21523854) UniProt PMID:21523854 NCBI chr 2:109,747,919...109,844,602
Ensembl chr 2:109,747,992...109,844,602 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP (PMID:16216236) UniProt PMID:16216236 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Maged1 MAGE family member D1 involved_in IMP (PMID:19268530) UniProt PMID:19268530 NCBI chr  X:93,579,080...93,585,631
Ensembl chr  X:93,579,080...93,585,749 		JBrowse link
G Nog noggin involved_in IDA (PMID:12141440), (PMID:17522159) UniProt PMID:12141440 PMID:17522159 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Pax2 paired box 2 involved_in IMP (PMID:17314325), (PMID:17881463) UniProt PMID:17314325 PMID:17881463 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Pax8 paired box 8 involved_in IMP (PMID:17314325) UniProt PMID:17314325 NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within IMP (PMID:24550112) MGI PMID:24550112 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within
involved_in		 IGI
IMP		 (PMID:21281623)
(PMID:17300925)		 MGI
UniProt		 PMID:17300925 PMID:21281623 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six4 sine oculis-related homeobox 4 involved_in IMP (PMID:17300925) UniProt PMID:17300925 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IMP (PMID:16396903) UniProt PMID:16396903 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 involved_in IMP (PMID:21212101) UniProt PMID:21212101 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in IMP (PMID:21212101) UniProt PMID:21212101 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000096 GO_REF:0000107 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Vegfa vascular endothelial growth factor A involved_in IDA (PMID:16291795) UniProt PMID:16291795 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
G Wnt2b wingless-type MMTV integration site family, member 2B acts_upstream_of_or_within IDA (PMID:11507767) MGI PMID:11507767 NCBI chr 3:104,852,121...104,869,025
Ensembl chr 3:104,852,588...104,869,237 		JBrowse link
positive regulation of metanephric ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wt1 WT1 transcription factor involved_in IMP (PMID:8395349) UniProt PMID:8395349 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (PMID:19112489) UniProt PMID:19112489 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Six1 sine oculis-related homeobox 1 involved_in IMP (PMID:17300925) UniProt PMID:17300925 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six4 sine oculis-related homeobox 4 involved_in IMP (PMID:17300925) UniProt PMID:17300925 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lzts2 leucine zipper, putative tumor suppressor 2 acts_upstream_of_or_within IMP (PMID:21949185) MGI PMID:21949185 NCBI chr19:45,003,615...45,015,554
Ensembl chr19:45,002,853...45,015,550 		JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (PMID:20040500) MGI PMID:20040500 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645 		JBrowse link
G Six1 sine oculis-related homeobox 1 involved_in IMP (PMID:17300925) UniProt PMID:17300925 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six4 sine oculis-related homeobox 4 involved_in IMP (PMID:17300925) UniProt PMID:17300925 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six2 sine oculis-related homeobox 2 involved_in IMP (PMID:17036046) UniProt PMID:17036046 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell line derived neurotrophic factor involved_in ISO GO_Central GO_REF:0000096 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (PMID:20040500) MGI PMID:20040500 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in IMP (PMID:16319112) UniProt PMID:16319112 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in IMP (PMID:8657307) UniProt PMID:8657307 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IDA (PMID:17522159) UniProt PMID:17522159 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within IMP (PMID:9637690) MGI PMID:9637690 NCBI chr 3:144,135,462...144,275,977
Ensembl chr 3:144,135,467...144,275,942 		JBrowse link
G Nog noggin involved_in IDA (PMID:17522159) UniProt PMID:17522159 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmn1 formin 1 acts_upstream_of_or_within IMP (PMID:7517224) MGI PMID:7517224 NCBI chr 2:113,158,029...113,547,113
Ensembl chr 2:113,158,081...113,547,112 		JBrowse link
G Kif26b kinesin family member 26B acts_upstream_of_or_within IMP (PMID:20439720) MGI PMID:20439720 NCBI chr 1:178,356,690...178,766,765
Ensembl chr 1:178,356,690...178,766,765 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within
involved_in		 IMP (PMID:16839447)
(PMID:11688560), (PMID:16839447)		 MGI
UniProt		 PMID:11688560 PMID:16839447 NCBI chr 8:89,753,867...89,770,790
Ensembl chr 8:89,753,863...89,770,790 		JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in IEP (PMID:15821257) UniProt PMID:15821257 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 involved_in IEP (PMID:15821257) UniProt PMID:15821257 NCBI chr 3:8,728,419...8,732,098
Ensembl chr 3:8,728,419...8,732,316 		JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 involved_in IEP (PMID:22194864) UniProt PMID:22194864 NCBI chr 6:67,511,043...67,512,806
Ensembl chr 6:67,511,046...67,512,780 		JBrowse link
G Wnt11 wingless-type MMTV integration site family, member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,484,293...98,503,954
Ensembl chr 7:98,484,319...98,504,402 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28636
    developmental process 7494
      anatomical structure development 6964
        tube development 1404
          mesonephric tubule development 118
            ureteric bud development 114
              anterior/posterior pattern specification involved in ureteric bud development + 0
              mesenchymal cell proliferation involved in ureteric bud development 2
              metanephric part of ureteric bud development + 5
              ureter part of ureteric bud development 0
              ureteric bud morphogenesis + 78
Path 2
Term Annotations click to browse term
  biological_process 28636
    developmental process 7494
      anatomical structure development 6964
        multicellular organism development 5540
          system development 4764
            renal system development 423
              kidney development 410
                mesonephros development 121
                  mesonephric epithelium development 118
                    mesonephric tubule development 118
                      ureteric bud development 114
                        anterior/posterior pattern specification involved in ureteric bud development + 0
                        mesenchymal cell proliferation involved in ureteric bud development 2
                        metanephric part of ureteric bud development + 5
                        ureter part of ureteric bud development 0
                        ureteric bud morphogenesis + 78
paths to the root