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ONTOLOGY REPORT - ANNOTATIONS

Term:ureteric bud development
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Accession:GO:0001657 term browser browse the term
Definition:The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure.

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ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG2 arginase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:44,851,139...44,884,118
Ensembl chr24:44,851,175...44,883,853 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8623928) MGI
Ensembl		 PMID:8623928 GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BDNF brain derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:16018995) MGI PMID:16018995 NCBI chr 1:37,386,825...37,451,380
Ensembl chr 1:37,449,593...37,450,336 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12141440)
(PMID:12631064)		 MGI
Ensembl		 PMID:12141440 PMID:12631064 GO_REF:0000107 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:6,856,396...6,954,948
Ensembl chr 2:6,856,453...6,954,944 		JBrowse link
G BMPER BMP binding endothelial regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:24,255,857...24,500,790
Ensembl chr21:24,255,866...24,500,720 		JBrowse link
G CAT catalase ISO RGD PMID:22733796 RGD:7206853 NCBI chr 1:30,792,533...30,828,920
Ensembl chr 1:30,792,399...30,829,592 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,859,301...64,865,676
Ensembl chr12:64,860,958...64,863,544 		JBrowse link
G CRLF1 cytokine receptor like factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,061,289...17,074,930
Ensembl chr 6:17,061,621...17,074,794 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO (PMID:17435047) MGI PMID:17435047 NCBI chr15:89,937,900...90,214,976
Ensembl chr15:90,055,964...90,215,652 		JBrowse link
G EPCAM epithelial cell adhesion molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:59,815,128...59,832,360
Ensembl chr14:59,815,064...59,832,229 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16018995) MGI
Ensembl		 PMID:16018995 GO_REF:0000107 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16442091) Ensembl
MGI		 PMID:16442091 GO_REF:0000107 NCBI chr 8:36,426,116...36,485,683
Ensembl chr 8:36,427,110...36,485,508 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16442091) MGI PMID:16442091 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10704385) Ensembl
MGI		 PMID:10704385 GO_REF:0000107 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476 		JBrowse link
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10704385) Ensembl
MGI		 PMID:10704385 GO_REF:0000107 NCBI chr 5:71,951,980...71,955,021
Ensembl chr 5:71,952,632...71,954,134 		JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12729564) Ensembl
MGI		 PMID:12729564 GO_REF:0000107 NCBI chr11:51,693,664...51,702,781
Ensembl chr11:51,693,717...51,700,278 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15905075)
(PMID:15691764)		 Ensembl
MGI		 PMID:15691764 PMID:15905075 GO_REF:0000107 NCBI chr 4:36,662,033...36,691,761
Ensembl chr 4:36,665,009...36,684,257 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15930111) MGI
Ensembl		 PMID:15930111 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103216393 paired box protein Pax-2 acts_upstream_of_or_within ISO (PMID:16018995) MGI PMID:16018995 NCBI chr 9:93,763,975...93,847,180 JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12141440) Ensembl
MGI		 PMID:12141440 GO_REF:0000107 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
G NPNT nephronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17537792) Ensembl
MGI		 PMID:17537792 GO_REF:0000107 NCBI chr 7:53,924,655...54,001,320
Ensembl chr 7:53,924,701...54,001,852 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,364,115...88,371,258
Ensembl chr14:88,364,166...88,371,263 		JBrowse link
G RARA retinoic acid receptor alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12195422) MGI
Ensembl		 PMID:12195422 GO_REF:0000107 NCBI chr16:65,817,849...65,866,862
Ensembl chr16:65,817,757...65,866,878 		JBrowse link
G RARB retinoic acid receptor beta acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12195422) MGI
Ensembl		 PMID:12195422 GO_REF:0000107 NCBI chr15:69,851,447...70,266,215
Ensembl chr15:70,096,117...70,264,905 		JBrowse link
G RET ret proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12195422) Ensembl
MGI		 PMID:12195422 GO_REF:0000107 NCBI chr 9:38,746,088...38,798,773
Ensembl chr 9:38,769,170...38,796,712 		JBrowse link
G ROBO2 roundabout guidance receptor 2 involved_in ISO (PMID:17357069)
(PMID:15130495)		 UniProt PMID:15130495 PMID:17357069 NCBI chr22:99,334,033...101,101,924 JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:11688560) MGI PMID:11688560 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SDC1 syndecan 1 ISO RGD PMID:15282150 RGD:1643132 NCBI chr14:87,499,732...87,523,122
Ensembl chr14:87,499,574...87,525,026 		JBrowse link
G SDC4 syndecan 4 ISO RGD PMID:15282150 RGD:1643132 NCBI chr 2:18,490,474...18,513,329
Ensembl chr 2:18,490,485...18,513,332 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:39,243,775...39,289,050
Ensembl chr 8:39,243,780...39,288,984 		JBrowse link
G SIM1 SIM bHLH transcription factor 1 involved_in ISO (PMID:16545622) UniProt PMID:16545622 NCBI chr13:73,451,838...73,527,733
Ensembl chr13:73,453,800...73,527,198 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12783782)
(PMID:16018995)		 Ensembl
MGI		 PMID:12783782 PMID:16018995 GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SLIT2 slit guidance ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:29,650,589...30,020,105
Ensembl chr27:29,650,337...29,803,612 		JBrowse link
G SMAD1 SMAD family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,047,273...92,123,451
Ensembl chr 7:92,079,914...92,123,429 		JBrowse link
G SMAD2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMAD3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SMAD5 SMAD family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,877,294...38,926,208
Ensembl chr23:38,877,315...38,921,202 		JBrowse link
G SMAD6 SMAD family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:16,760,117...16,841,286
Ensembl chr26:16,759,260...16,840,240 		JBrowse link
G SMAD7 SMAD family member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:31,993,543...32,024,088
Ensembl chr18:31,993,681...32,024,850 		JBrowse link
G SMAD9 SMAD family member 9 involved_in ISO (PMID:14656760) UniProt PMID:14656760 NCBI chr 3:15,369,119...15,444,599
Ensembl chr 3:15,372,933...15,405,836 		JBrowse link
G SPRY1 sprouty RTK signaling antagonist 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15691764) Ensembl
MGI		 PMID:15691764 GO_REF:0000107 NCBI chr 7:70,626,524...70,634,084
Ensembl chr 7:70,631,925...70,632,884 		JBrowse link
G TCF21 transcription factor 21 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10572052) Ensembl
MGI		 PMID:10572052 GO_REF:0000107 NCBI chr13:39,607,179...39,610,336
Ensembl chr13:39,607,182...39,610,388 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,651,583...35,674,387
Ensembl chr 6:35,648,677...35,674,365 		JBrowse link
G TSHZ3 teashirt zinc finger homeobox 3 acts_upstream_of_or_within ISO (PMID:18776146) MGI PMID:18776146 NCBI chr 6:26,334,239...26,409,597 JBrowse link
G VCAN versican involved_in ISO (PMID:16545622) UniProt PMID:16545622 NCBI chr 4:77,581,627...77,692,495
Ensembl chr 4:77,593,449...77,690,616 		JBrowse link
G WT1 WT1 transcription factor involved_in ISO (PMID:10322633) UniProt PMID:10322633 NCBI chr 1:32,750,300...32,801,832 JBrowse link
branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF1 fibroblast growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:45,220,827...45,328,387
Ensembl chr23:45,220,800...45,328,328 		JBrowse link
branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 acts_upstream_of_or_within ISO (PMID:23661704) MGI PMID:23661704 NCBI chr 4:4,866,300...5,040,338 JBrowse link
G ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:4,866,477...4,967,550 JBrowse link
G AGT angiotensinogen acts_upstream_of_or_within
NOT|acts_upstream_of_or_within		 ISO (PMID:12657564)
(PMID:8675666)		 MGI PMID:8675666 PMID:12657564 NCBI chr25:67,964,840...67,977,006
Ensembl chr25:67,962,401...67,973,324 		JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14699151)
(PMID:16672320)		 MGI
Ensembl		 PMID:14699151 PMID:16672320 GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15925496) Ensembl
MGI		 PMID:15925496 GO_REF:0000107 NCBI chr 2:31,349,394...31,361,227
Ensembl chr 2:31,348,808...31,360,901 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17522159) MGI
Ensembl		 PMID:17522159 GO_REF:0000107 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G CD44 CD44 molecule (IN blood group) acts_upstream_of_or_within ISO (PMID:10926769) MGI PMID:10926769 NCBI chr 1:30,039,854...30,132,646
Ensembl chr 1:30,039,749...30,132,416 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in
NOT|involved_in		 ISO PMID:15843474
(PMID:17615577)		 UniProt PMID:15843474 PMID:17615577 RGD:8554075 NCBI chr  X:62,126,383...62,131,919
Ensembl chr  X:62,126,320...62,130,220 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 NOT|involved_in ISO (PMID:17615577) UniProt PMID:17615577 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17537789) Ensembl
MGI		 PMID:17537789 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17803964) MGI
Ensembl		 PMID:17803964 GO_REF:0000107 NCBI chr20:121,861,266...121,921,541
Ensembl chr20:121,892,415...121,921,621 		JBrowse link
G DCHS1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21303848) Ensembl
MGI		 PMID:21303848 GO_REF:0000107 NCBI chr 1:58,170,494...58,204,156
Ensembl chr 1:58,184,591...58,205,962 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO (PMID:17172448)
(PMID:16105026)
(PMID:17435047)		 MGI PMID:16105026 PMID:17172448 PMID:17435047 NCBI chr15:89,937,900...90,214,976
Ensembl chr15:90,055,964...90,215,652 		JBrowse link
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:16937369) MGI PMID:16937369 NCBI chr 7:35,993,669...35,999,443 JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12783782) MGI
Ensembl		 PMID:12783782 GO_REF:0000107 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G FAT4 FAT atypical cadherin 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21303848) Ensembl
MGI		 PMID:21303848 GO_REF:0000107 NCBI chr 7:72,498,182...72,686,607
Ensembl chr 7:72,500,264...72,685,546 		JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:12631064) UniProt PMID:12631064 NCBI chr 7:70,089,394...70,157,423 JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16049111) Ensembl
MGI		 PMID:16049111 GO_REF:0000107 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G FOXD1 forkhead box D1 acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chr 4:67,790,423...67,796,901 JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13678594), (PMID:21281623) Ensembl
MGI		 PMID:13678594 PMID:21281623 GO_REF:0000107 NCBI chr 4:36,662,033...36,691,761
Ensembl chr 4:36,665,009...36,684,257 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16396903) Ensembl
MGI		 PMID:16396903 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within ISO (PMID:15925496) MGI PMID:15925496 NCBI chr  X:108,688,706...109,143,653 JBrowse link
G GREB1L GREB1 like retinoic acid receptor coactivator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29100091) Ensembl
MGI		 PMID:29100091 GO_REF:0000107 NCBI chr18:58,960,397...59,104,188
Ensembl chr18:58,963,914...59,103,993 		JBrowse link
G GZF1 GDNF inducible zinc finger protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14522971) Ensembl
MGI		 PMID:14522971 GO_REF:0000107 NCBI chr 2:52,366,146...52,377,423
Ensembl chr 2:52,369,557...52,375,594 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11493536) Ensembl
MGI		 PMID:11493536 GO_REF:0000107 NCBI chr21:31,180,232...31,187,709
Ensembl chr21:31,183,682...31,186,010 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chr10:61,681,474...61,693,974
Ensembl chr10:61,682,400...61,684,168 		JBrowse link
G HS3ST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:12,835,025...12,936,431
Ensembl chr16:12,835,338...12,935,627 		JBrowse link
G ILK integrin linked kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15831470) Ensembl
MGI		 PMID:15831470 GO_REF:0000107 NCBI chr 1:58,214,630...58,221,770
Ensembl chr 1:58,213,310...58,221,217 		JBrowse link
G LAMA5 laminin subunit alpha 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14568553) Ensembl
MGI		 PMID:14568553 GO_REF:0000107 NCBI chr 2:1,872,740...1,930,037
Ensembl chr 2:1,872,832...1,929,854 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103216393 paired box protein Pax-2 involved_in
acts_upstream_of_or_within		 ISO (PMID:1337742)
(PMID:16672320)		 UniProt
MGI		 PMID:1337742 PMID:16672320 NCBI chr 9:93,763,975...93,847,180 JBrowse link
G LOC103219825 protein patched homolog 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19809516) MGI
Ensembl		 PMID:19809516 GO_REF:0000107 NCBI chr12:107,580,895...107,656,443
Ensembl chr12:107,590,663...107,652,985 		JBrowse link
G LOC103242418 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:13,604,377...13,653,247
Ensembl chr16:13,604,297...13,653,242 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:19161241) UniProt PMID:19161241 NCBI chr 8:122,282,989...122,288,392
Ensembl chr 8:122,282,630...122,288,384 		JBrowse link
G NPNT nephronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17537792) Ensembl
MGI		 PMID:17537792 GO_REF:0000107 NCBI chr 7:53,924,655...54,001,320
Ensembl chr 7:53,924,701...54,001,852 		JBrowse link
G PAX2 paired box 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:93,767,514...93,844,326 JBrowse link
G PAX8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:16,236,074...16,299,650
Ensembl chr14:16,233,378...16,297,365 		JBrowse link
G PBX1 PBX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12591246) Ensembl
MGI		 PMID:12591246 GO_REF:0000107 NCBI chr25:63,990,553...64,317,901
Ensembl chr25:63,989,612...64,084,673 		JBrowse link
G PGF placental growth factor acts_upstream_of_or_within ISO (PMID:13678594) MGI PMID:13678594 NCBI chr24:52,160,904...52,174,493
Ensembl chr24:52,161,787...52,173,989 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
G PSPN persephin acts_upstream_of_or_within ISO (PMID:9491986) MGI PMID:9491986 NCBI chr 6:5,991,311...5,993,397 JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of
involved_in		 ISO (PMID:24550112)
(PMID:12482961)		 MGI
UniProt		 PMID:12482961 PMID:24550112 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16396903) Ensembl
MGI		 PMID:16396903 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12783782) Ensembl
MGI		 PMID:12783782 GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15925496) Ensembl
MGI		 PMID:15925496 GO_REF:0000107 NCBI chr18:29,894,157...29,951,445
Ensembl chr18:29,897,621...29,934,478 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
G TCF21 transcription factor 21 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9507058)
(PMID:10572052)		 Ensembl
MGI		 PMID:9507058 PMID:10572052 GO_REF:0000107 NCBI chr13:39,607,179...39,610,336
Ensembl chr13:39,607,182...39,610,388 		JBrowse link
G TIMELESS timeless circadian regulator acts_upstream_of_or_within ISO PMID:10963667 MGI
RGD		 PMID:10963667 RGD:2308864 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G TMEM59L transmembrane protein 59 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,080,955...17,093,524
Ensembl chr 6:17,080,093...17,093,574 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034) Ensembl
MGI		 PMID:16054034 GO_REF:0000107 NCBI chr11:45,217,402...45,222,996
Ensembl chr11:45,219,027...45,222,017 		JBrowse link
G WNT4 Wnt family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034) Ensembl
MGI		 PMID:16054034 GO_REF:0000107 NCBI chr20:110,517,391...110,543,802
Ensembl chr20:110,517,564...110,541,203 		JBrowse link
G WNT6 Wnt family member 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11948913) Ensembl
MGI		 PMID:11948913 GO_REF:0000107 NCBI chr10:104,759,794...104,775,642
Ensembl chr10:104,760,045...104,774,487 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034) Ensembl
MGI		 PMID:16054034 GO_REF:0000107 NCBI chr16:60,560,132...60,596,782
Ensembl chr16:60,581,258...60,586,596 		JBrowse link
G WT1 WT1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:32,750,300...32,801,832 JBrowse link
dichotomous subdivision of terminal units involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXD1 forkhead box D1 involved_in ISO (PMID:15634693) UniProt PMID:15634693 NCBI chr 4:67,790,423...67,796,901 JBrowse link
mesenchymal cell proliferation involved in ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:31,349,394...31,361,227
Ensembl chr 2:31,348,808...31,360,901 		JBrowse link
G GPC3 glypican 3 involved_in ISO (PMID:15925496) UniProt PMID:15925496 NCBI chr  X:108,688,706...109,143,653 JBrowse link
metanephric part of ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALB1 calbindin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,135,956...85,160,806
Ensembl chr 8:85,137,528...85,160,855 		JBrowse link
G FOXJ1 forkhead box J1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:45,536,973...45,544,331
Ensembl chr16:45,539,510...45,544,299 		JBrowse link
G LHX1 LIM homeobox 1 involved_in ISO PMID:9496787 UniProt PMID:9496787 RGD:8553921 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
negative regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21281623) MGI
Ensembl		 PMID:21281623 GO_REF:0000107 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G TACSTD2 tumor associated calcium signal transducer 2 involved_in ISO (PMID:22194864) UniProt PMID:22194864 NCBI chr20:74,403,547...74,406,756 JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
positive regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:67,964,840...67,977,006
Ensembl chr25:67,962,401...67,973,324 		JBrowse link
G AGTR1 angiotensin II receptor type 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr15:41,957,826...42,002,776 JBrowse link
G AGTR2 angiotensin II receptor type 2 involved_in ISO PMID:17537984
(PMID:18607644)		 UniProt PMID:17537984 PMID:18607644 RGD:1643596
G BMP4 bone morphogenetic protein 4 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:36,662,033...36,691,761
Ensembl chr 4:36,665,009...36,684,257 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in		 ISO (PMID:21281623)
(PMID:17522159)		 MGI
UniProt		 PMID:17522159 PMID:21281623 NCBI chr26:50,152,097...50,169,760 JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 Ensembl chr26:50,155,496...50,156,047 JBrowse link
G HOXB7 homeobox B7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:69,020,325...69,024,362
Ensembl chr16:69,020,906...69,023,671 		JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:37,632,748...37,741,100
Ensembl chr 1:37,632,710...37,741,330 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103216393 paired box protein Pax-2 involved_in ISO (PMID:17314325), (PMID:17881463) UniProt PMID:17314325 PMID:17881463 NCBI chr 9:93,763,975...93,847,180 JBrowse link
G MAGED1 MAGE family member D1 involved_in ISO (PMID:19268530) UniProt PMID:19268530 NCBI chr  X:48,523,139...48,629,837
Ensembl chr  X:48,621,533...48,630,306 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
G PAX8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:16,236,074...16,299,650
Ensembl chr14:16,233,378...16,297,365 		JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:24550112) MGI PMID:24550112 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21281623) Ensembl
MGI		 PMID:21281623 GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SIX4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:37,899,463...37,911,875
Ensembl chr24:37,900,909...37,911,612 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:877,988...883,278
Ensembl chr 5:878,217...881,662 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISO PMID:17537984 UniProt PMID:17537984 RGD:1643596 NCBI chr 6:35,651,583...35,674,387
Ensembl chr 6:35,648,677...35,674,365 		JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (PMID:16291795) UniProt PMID:16291795 NCBI chr17:28,377,959...28,394,508 JBrowse link
G VEGFA vascular endothelial growth factor A involved_in IEA Ensembl GO_REF:0000107 Ensembl chr17:28,379,880...28,393,995 JBrowse link
G WNT2B Wnt family member 2B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11507767) MGI
Ensembl		 PMID:11507767 GO_REF:0000107 NCBI chr20:21,116,310...21,129,461
Ensembl chr20:21,117,415...21,123,516 		JBrowse link
positive regulation of metanephric ureteric bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WT1 WT1 transcription factor involved_in ISO (PMID:8395349) UniProt PMID:8395349 NCBI chr 1:32,750,300...32,801,832 JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:36,662,033...36,691,761
Ensembl chr 4:36,665,009...36,684,257 		JBrowse link
G SIX1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SIX4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:37,899,463...37,911,875
Ensembl chr24:37,900,909...37,911,612 		JBrowse link
primary ureteric bud growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LZTS2 leucine zipper tumor suppressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21949185) Ensembl
MGI		 PMID:21949185 GO_REF:0000107 NCBI chr 9:94,015,432...94,026,191
Ensembl chr 9:94,018,257...94,027,268 		JBrowse link
regulation of branch elongation involved in ureteric bud branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20040500) Ensembl
MGI		 PMID:20040500 GO_REF:0000107 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
G SIX1 SIX homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SIX4 SIX homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:37,899,463...37,911,875
Ensembl chr24:37,900,909...37,911,612 		JBrowse link
regulation of branching involved in ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:62,212,920...62,219,976
Ensembl chr14:62,213,115...62,220,069 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDNF glial cell derived neurotrophic factor involved_in ISO PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr 4:36,662,033...36,691,761
Ensembl chr 4:36,665,009...36,684,257 		JBrowse link
ureteric bud elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20040500) Ensembl
MGI		 PMID:20040500 GO_REF:0000107 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:36,662,033...36,691,761
Ensembl chr 4:36,665,009...36,684,257 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:17522159) UniProt PMID:17522159 NCBI chr26:50,152,097...50,169,760 JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 Ensembl chr26:50,155,496...50,156,047 JBrowse link
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9637690) Ensembl
MGI		 PMID:9637690 GO_REF:0000107 NCBI chr20:46,346,009...46,546,363
Ensembl chr20:46,350,496...46,386,791 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
ureteric bud invasion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FMN1 formin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7517224) Ensembl
MGI		 PMID:7517224 GO_REF:0000107 NCBI chr26:49,700,309...50,117,799
Ensembl chr26:49,734,553...49,996,405 		JBrowse link
G KIF26B kinesin family member 26B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20439720) MGI
Ensembl		 PMID:20439720 GO_REF:0000107 NCBI chr25:82,177,587...82,735,055
Ensembl chr25:82,631,337...82,734,410 		JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:16839447)
(PMID:11688560), (PMID:16839447)		 MGI
UniProt		 PMID:11688560 PMID:16839447 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
ureteric bud morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:88,220,093...88,222,563
Ensembl chr15:88,220,083...88,223,243 		JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (PMID:15821257) UniProt PMID:15821257 NCBI chr 8:75,225,081...75,228,941
Ensembl chr 8:75,224,769...75,228,896 		JBrowse link
G TACSTD2 tumor associated calcium signal transducer 2 involved_in ISO (PMID:22194864) UniProt PMID:22194864 NCBI chr20:74,403,547...74,406,756 JBrowse link
G WNT11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,393,975...67,427,247
Ensembl chr 1:67,399,074...67,418,509 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19806
    developmental process 6822
      anatomical structure development 6401
        tube development 1258
          mesonephric tubule development 117
            ureteric bud development 116
              anterior/posterior pattern specification involved in ureteric bud development + 0
              mesenchymal cell proliferation involved in ureteric bud development 2
              metanephric part of ureteric bud development + 5
              ureter part of ureteric bud development 0
              ureteric bud morphogenesis + 81
Path 2
Term Annotations click to browse term
  biological_process 19806
    developmental process 6822
      anatomical structure development 6401
        multicellular organism development 5150
          system development 4461
            renal system development 418
              kidney development 404
                mesonephros development 121
                  mesonephric epithelium development 117
                    mesonephric tubule development 117
                      ureteric bud development 116
                        anterior/posterior pattern specification involved in ureteric bud development + 0
                        mesenchymal cell proliferation involved in ureteric bud development 2
                        metanephric part of ureteric bud development + 5
                        ureter part of ureteric bud development 0
                        ureteric bud morphogenesis + 81
paths to the root