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ONTOLOGY REPORT - ANNOTATIONS

Term:eye development
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Accession:GO:0001654 term browser browse the term
Definition:The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.
Synonyms:alt_id: GO:0042460
 xref: Wikipedia:Eye_development


show annotations for term's descendants           Sort by:
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 involved_in ISO (MGI:5585659|PMID:25030174) RGD PMID:25030174 MGI:5585659 NCBI chr 6:139,836,528...139,932,830
Ensembl chr 6:139,835,949...139,932,830 		JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 involved_in ISO (PMID:23818446) RGD PMID:23818446 NCBI chr19:41,686,951...41,840,035
Ensembl chr19:41,688,617...41,839,781 		JBrowse link
G Atf6 activating transcription factor 6 involved_in ISO
IEA		 (PMID:26029869)
GO_REF:0000107		 RGD
Ensembl		 PMID:26029869 GO_REF:0000107 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO MGI:98715 (PMID:22228099) RGD PMID:22228099 NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:16385460) RGD PMID:16385460 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO UniProtKB:P23359 (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO UniProtKB:P23359 (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:12117821) RGD PMID:12117821 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO
ISS
IEA		 (PMID:22284829)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:22284829 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Cpamd8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 involved_in ISO (PMID:27839872) RGD PMID:27839872 NCBI chr 4:155,332,827...155,413,098
Ensembl chr 4:155,332,827...155,413,117 		JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within ISO MGI:1857595 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within ISO MGI:2387106 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Cst3 cystatin C IEP RGD PMID:11431459 RGD:2306512 NCBI chr 3:136,336,923...136,340,796
Ensembl chr 3:136,336,920...136,340,822 		JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (MGI:5291533|PMID:21858205) RGD PMID:21858205 MGI:5291533 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4834518 (PMID:20675713) RGD PMID:20675713 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:9792859)
MGI:1856705|MGI:1857869 (PMID:10072431), (PMID:9635428)		 RGD PMID:9635428 PMID:9792859 PMID:10072431 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxe3 forkhead box E3 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1856851 (PMID:10652278)
(PMID:27218149)		 UniProt
RGD		 PMID:10652278 PMID:27218149 GO_REF:0000024 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:29688405), (PMID:30802441)
MGI:3794302 (PMID:26234751)
(MGI:6368066|PMID:30802441)		 RGD PMID:26234751 PMID:29688405 PMID:30802441 MGI:6368066 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785 		JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1918742 (PMID:22228099) RGD PMID:22228099 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Mab21l1 mab-21 like 1 involved_in ISO (PMID:27103078), (PMID:30487245) RGD PMID:27103078 PMID:30487245 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885 		JBrowse link
G Mab21l2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) RGD PMID:24906020 PMID:25719200 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Meis2 Meis homeobox 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:97490 (PMID:12183364)		 GO_Central
RGD		 PMID:12183364 GO_REF:0000033 NCBI chr 3:102,742,904...102,944,833
Ensembl chr 3:102,742,900...102,949,696 		JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691 		JBrowse link
G Pbx1 PBX homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pbx2 PBX homeobox 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,151,500...4,156,425
Ensembl chr20:4,151,500...4,156,425 		JBrowse link
G Pbx3 PBX homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791 		JBrowse link
G Pbx4 PBX homeobox 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:19,555,089...19,590,054
Ensembl chr16:19,555,090...19,590,014 		JBrowse link
G Pxdn peroxidasin involved_in ISO (MGI:6400066|PMID:31817535) RGD PMID:31817535 MGI:6400066 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:54,944,099...54,976,093
Ensembl chr17:54,943,955...54,976,043 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA		 (PMID:10232633)
GO_REF:0000107
(MGI:3604178|PMID:15994349)		 RGD
Ensembl		 PMID:10232633 PMID:15994349 GO_REF:0000107 MGI:3604178 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Sall2 spalt-like transcription factor 2 involved_in ISO (PMID:24412933) RGD PMID:24412933 NCBI chr15:25,021,345...25,038,918
Ensembl chr15:25,021,345...25,038,918 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)		 RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5697095|PMID:26231217)		 UniProt
RGD		 PMID:26231217 GO_REF:0000024 MGI:5697095 NCBI chr 1:84,618,714...84,825,956
Ensembl chr 1:84,618,719...84,703,802 		JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:18791198)
(PMID:12050133)
GO_REF:0000033		 RGD
GO_Central		 PMID:12050133 PMID:18791198 GO_REF:0000033 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Six6 SIX homeobox 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,634,568...91,639,548
Ensembl chr 6:91,634,568...91,639,548 		JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in ISO (PMID:24891338) RGD PMID:24891338 NCBI chr 7:822,873...830,865
Ensembl chr 7:824,818...830,242 		JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5775676|PMID:27018474)		 UniProt
Ensembl
RGD		 PMID:27018474 GO_REF:0000024 GO_REF:0000107 MGI:5775676 NCBI chr 1:79,988,540...80,011,262
Ensembl chr 1:79,988,612...80,011,254 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO (PMID:21194678)
(MGI:4939981|PMID:21194678)		 RGD PMID:21194678 MGI:4939981 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18285410) RGD PMID:18285410 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15944186)		 AgBase
RGD		 PMID:15944186 GO_REF:0000024 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tymp thymidine phosphorylase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874 		JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in ISO (MGI:5706675|PMID:26644582) RGD PMID:26644582 MGI:5706675 NCBI chr 1:240,745,606...240,757,009
Ensembl chr 1:240,745,641...240,757,009 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH-like homeobox 2 acts_upstream_of_or_within ISO (PMID:14998930) RGD PMID:14998930 NCBI chr14:3,340,465...3,345,362
Ensembl chr14:3,340,465...3,345,353 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within ISO MGI:3054789 (PMID:15363391) RGD PMID:15363391 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of ISO (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:2149672 (PMID:16038893)		 Ensembl
RGD		 PMID:16038893 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:20459797) RGD PMID:20459797 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2158684|PMID:11861467)		 UniProt
RGD		 PMID:11861467 GO_REF:0000024 MGI:2158684 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO (MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:2158684 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:3701996 (PMID:17301087)
(MGI:3691257|PMID:17075007)		 UniProt
RGD		 PMID:17075007 PMID:17301087 GO_REF:0000024 MGI:3691257 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(MGI:5546314|PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 MGI:5546314 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) RGD PMID:18973577 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596 		JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 acts_upstream_of_or_within ISO MGI:3526871 (PMID:15572692) RGD PMID:15572692 NCBI chr 9:61,827,186...61,905,703
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493) RGD PMID:10973493 MGI:1889403 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1857891|MGI:2180721 (PMID:15366004), (PMID:16368932) RGD PMID:15366004 PMID:16368932 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO MGI:2448591 (PMID:11044403) RGD PMID:11044403 NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298 		JBrowse link
G B3glct beta 3-glucosyltransferase acts_upstream_of_or_within ISO (PMID:31600785) RGD PMID:31600785 NCBI chr12:5,255,521...5,346,807
Ensembl chr12:5,255,740...5,346,810 		JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (PMID:22179047) RGD PMID:22179047 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:1857137|MGI:2137520 (PMID:14681194), (PMID:9268572) RGD PMID:9268572 PMID:14681194 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:1338938 (PMID:15673568) RGD PMID:15673568 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) RGD PMID:15454078 NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO MGI:5708063 (PMID:24947469) RGD PMID:24947469 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:1933758|MGI:3840687 (PMID:19276117) RGD PMID:19276117 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:3588650 (PMID:16207732) RGD PMID:16207732 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1916503 (PMID:12546709) RGD PMID:12546709 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO MGI:88515 (PMID:12546709) RGD PMID:12546709 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within ISO MGI:1857969 (PMID:10585769) RGD PMID:10585769 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in ISO (PMID:16960806) RGD PMID:16960806 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221 		JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within IEP
ISO		 MGI:2137511 (PMID:11381063) RGD PMID:11381063 PMID:8706714 RGD:1298813 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:11773036) RGD PMID:11773036 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:15967433 RGD:2306661 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO MGI:3042750 (PMID:15105374) RGD PMID:15105374 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4835411 (PMID:19155270), (PMID:23591631) RGD PMID:19155270 PMID:23591631 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705|MGI:1857869 (PMID:10395790), (PMID:10767326) RGD PMID:10395790 PMID:10767326 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:10767326) RGD PMID:10767326 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within ISO MGI:2387330 (PMID:11309658) RGD PMID:11309658 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within ISO MGI:3723630 (PMID:17619227) RGD PMID:17619227 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:2137525|MGI:3052418 (PMID:11782410), (PMID:15253273) RGD PMID:11782410 PMID:15253273 NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:98297 (PMID:18582859) RGD PMID:18582859 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:32049342) RGD PMID:32049342 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO MGI:1915913 (PMID:21296886) RGD PMID:21296886 NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4942413 (PMID:21377456) RGD PMID:21377456 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3703278|PMID:17331197)		 UniProt
RGD		 PMID:17331197 GO_REF:0000024 MGI:3703278 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO MGI:3822474 (PMID:19093031) RGD PMID:19093031 NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1857713 (PMID:10196361) RGD PMID:10196361 NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Lama1 laminin subunit alpha 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO MGI:1862040 (PMID:9238094) RGD PMID:9238094 NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:10660670), (PMID:20568247) RGD PMID:10660670 PMID:20568247 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Mab21l1 mab-21 like 1 acts_upstream_of_or_within ISO (PMID:12642482) RGD PMID:12642482 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO MGI:3511363 (PMID:15385160) RGD PMID:15385160 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:12941696) RGD PMID:12941696 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2684189 (PMID:14500757) RGD PMID:14500757 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:88401 (PMID:15576400)		 Ensembl
RGD		 PMID:15576400 GO_REF:0000107 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO MGI:5288506 (PMID:21531335) RGD PMID:21531335 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864 		JBrowse link
G Mtnr1a melatonin receptor 1A IEP RGD PMID:12890503 RGD:9588674 NCBI chr16:47,144,461...47,163,919
Ensembl chr16:47,144,461...47,163,919 		JBrowse link
G Mtnr1b melatonin receptor 1B IEP RGD PMID:12890503 RGD:9588674 NCBI chr 8:12,638,219...12,652,737
Ensembl chr 8:12,638,219...12,652,737 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857973|MGI:3055340 (PMID:19531352) RGD PMID:19531352 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:108055 (PMID:11861467) RGD PMID:11861467 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1339708 (PMID:11861467)		 GO_Central
RGD		 PMID:11861467 GO_REF:0000033 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394) RGD PMID:18477394 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2176490|MGI:2176560 (PMID:15371513), (PMID:16000615) RGD PMID:15371513 PMID:16000615 NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857673 (PMID:12756174)		 UniProt
RGD		 PMID:12756174 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:102764|MGI:108564|MGI:1856158|MGI:1931308|MGI:1934347|MGI:1934348 (PMID:11062307), (PMID:11069887), (PMID:12072567), (PMID:12183364), (PMID:12648492), (PMID:12756174), (PMID:16080917) RGD PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:4340776 (PMID:25220058) RGD PMID:25220058 NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9618168) RGD PMID:9618168 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 acts_upstream_of_or_within ISO MGI:3530910 (PMID:16847320) RGD PMID:16847320 NCBI chr20:9,662,866...9,705,030
Ensembl chr20:9,662,899...9,703,727 		JBrowse link
G Prss56 serine protease 56 involved_in
acts_upstream_of_or_within		 ISO (PMID:21397065)
MGI:5444189 (PMID:21532570)		 RGD PMID:21397065 PMID:21532570 NCBI chr 9:87,842,806...87,859,978
Ensembl chr 9:87,854,805...87,859,978 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA		 (PMID:20512159)
GO_REF:0000107		 RGD
Ensembl		 PMID:20512159 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rax retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856862|MGI:2152531 (PMID:11105055), (PMID:13970081), (PMID:15789424), (PMID:17247120), (PMID:640224)		 Ensembl
RGD		 PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 GO_REF:0000107 NCBI chr18:59,463,347...59,467,469
Ensembl chr18:59,463,737...59,467,431 		JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO (PMID:19474196) RGD PMID:19474196 NCBI chr 3:91,841,052...91,855,295
Ensembl chr 3:91,841,052...91,855,295 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:9512345 RGD:633787 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904), (PMID:17558409) RGD PMID:17553904 PMID:17558409 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:9376317) RGD PMID:9376317 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1934268|MGI:3052661|MGI:95729 (PMID:12195432), (PMID:12756179), (PMID:16236765), (PMID:18582859)		 Ensembl
RGD		 PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:97490 (PMID:12072567) RGD PMID:12072567 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc25a25 solute carrier family 25 member 25 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:99778 (PMID:21296886)		 Ensembl
RGD		 PMID:21296886 GO_REF:0000107 NCBI chr 3:15,708,702...15,742,195
Ensembl chr 3:15,708,703...15,742,216 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (PMID:23543054) RGD PMID:23543054 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21901792)		 UniProt
RGD		 PMID:21901792 GO_REF:0000024 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (PMID:14757819) RGD PMID:14757819 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4127851|MGI:4440463 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem231 transmembrane protein 231 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4284576 (PMID:22179047)		 Ensembl
RGD		 PMID:22179047 GO_REF:0000107 NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO		 GO_REF:0000024
(PMID:21856951)		 UniProt
RGD		 PMID:21856951 GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO MGI:88180 (PMID:14681194) RGD PMID:14681194 NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO MGI:1346018 (PMID:15905411) RGD PMID:15905411 NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO MGI:1277163 (PMID:15905411) RGD PMID:15905411 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO MGI:104554 (PMID:15576400) RGD PMID:15576400 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5558098|MGI:5558100 (PMID:24302887)		 Ensembl
RGD		 PMID:24302887 GO_REF:0000107 NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
G Wt1 WT1 transcription factor involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857268 (PMID:11889045)		 UniProt
RGD		 PMID:11889045 GO_REF:0000024 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO (PMID:27687499) RGD PMID:27687499 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO MGI:1857807 (PMID:11891232) RGD PMID:11891232 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO MGI:2150059 (PMID:11891232) RGD PMID:11891232 NCBI chr 7:130,722,675...130,726,207
Ensembl chr 7:130,721,748...130,726,209 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:88180 (PMID:9268572) RGD PMID:9268572 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654|MGI:2136986 (PMID:16154126), (PMID:16854970) RGD PMID:16154126 PMID:16854970 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO MGI:88464 (PMID:16051690) RGD PMID:16051690 NCBI chr11:42,776,851...42,906,432
Ensembl chr11:42,777,628...42,906,424 		JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO MGI:88463 (PMID:16051690) RGD PMID:16051690 NCBI chr 5:138,586,201...138,613,627
Ensembl chr 5:138,585,999...138,612,850 		JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within ISO MGI:2677305 (PMID:12971893) RGD PMID:12971893 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO MGI:2149765 (PMID:12971893) RGD PMID:12971893 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO MGI:2449673 (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:8387379) RGD PMID:8387379 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr 4:157,551,276...157,552,924 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO MGI:103223 (PMID:22627278) RGD PMID:22627278 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Mfn2 mitofusin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1861626 (PMID:16104381)		 Ensembl
RGD		 PMID:16104381 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (PMID:15728677) RGD PMID:15728677 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
MGI:1857444 (PMID:7926784)
GO_REF:0000107		 HGNC-UCL
RGD
Ensembl		 PMID:7926784 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Ring1 ring finger protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:99150 (PMID:16624538)		 Ensembl
RGD		 PMID:16624538 GO_REF:0000107 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:41,251,909...43,978,594
Ensembl chr16:41,252,182...43,978,594 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:106918|MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO MGI:1101770 (PMID:16624538) RGD PMID:16624538 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA		 (PMID:18654668)
GO_REF:0000033
(MGI:3838023|PMID:19228982)		 RGD
GO_Central		 PMID:18654668 PMID:19228982 GO_REF:0000033 MGI:3838023 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) RGD PMID:20300562 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:5693671 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO MGI:5140723 (PMID:21646512) RGD PMID:21646512 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:17064680
(MGI:3703484|PMID:17064680)		 RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3692444 (PMID:23676271)		 Ensembl
RGD		 PMID:23676271 GO_REF:0000107 NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3617328 (PMID:23676271)		 Ensembl
RGD		 PMID:23676271 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:21856951)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21856951 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:144,549,350...144,621,259
Ensembl chr 5:144,549,363...144,620,865 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3797299|PMID:18423449)		 UniProt
RGD		 PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352) RGD PMID:23580486 PMID:29518352 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:26607664) RGD PMID:26607664 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:9071226) RGD PMID:9071226 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO (PMID:27687499) RGD PMID:27687499 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:17064680
(MGI:3703484|PMID:17064680)		 RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Kera keratocan acts_upstream_of_or_within ISO UniProtKB:O60938 (PMID:10802664) RGD PMID:10802664 NCBI chr 7:32,397,382...32,404,837
Ensembl chr 7:32,397,382...32,404,837 		JBrowse link
G Krt12 keratin 12 involved_in
acts_upstream_of_or_within		 ISO
ISS
IEA		 (PMID:26758872)
MGI:3051854 (PMID:8977471)
(MGI:5752087|PMID:26758872)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:8977471 PMID:26758872 GO_REF:0000024 GO_REF:0000107 MGI:5752087 NCBI chr10:84,370,803...84,378,103
Ensembl chr10:84,370,883...84,378,045 		JBrowse link
G Limk2 LIM domain kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3612836 (PMID:26234751)		 Ensembl
RGD		 PMID:26234751 GO_REF:0000107 NCBI chr14:78,208,182...78,286,106
Ensembl chr14:78,218,063...78,286,007 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (PMID:7550230)
GO_REF:0000107		 RGD
Ensembl		 PMID:7550230 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5645931 (PMID:29450535)		 Ensembl
RGD		 PMID:29450535 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3797299|PMID:18423449)		 UniProt
RGD		 PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (PMID:16186342) RGD PMID:16186342 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (PMID:20574024) RGD PMID:20574024 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1861722 (PMID:17184764) RGD PMID:17184764 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3042765|PMID:14623956)
MGI:107928 (PMID:17184764)		 RGD PMID:14623956 PMID:17184764 MGI:3042765 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:6113512 (PMID:28817564) RGD PMID:28817564 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (PMID:15958512) RGD PMID:15958512 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO MGI:3574771|MGI:3583769 (PMID:18791178) RGD PMID:18791178 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:4458412 (PMID:23469164) RGD PMID:23469164 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Nes nestin involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:173,437,867...173,447,777
Ensembl chr 2:173,438,734...173,447,777 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846|MGI:1857880 (PMID:10498698), (PMID:10572050) RGD PMID:10498698 PMID:10572050 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within ISO MGI:3575541 (PMID:15661756) RGD PMID:15661756 NCBI chr 1:79,010,997...79,030,714
Ensembl chr 1:79,011,745...79,030,712 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:7607067) RGD PMID:7607067 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856 (PMID:7607067) RGD PMID:7607067 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) RGD PMID:17473173 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO MGI:4129326 (PMID:21945076) RGD PMID:21945076 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:19286674) RGD PMID:19286674 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (PMID:22228095) RGD PMID:22228095 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (PMID:10049573) RGD PMID:10049573 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:97490 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3777403 (PMID:18056999) RGD PMID:18056999 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:5297296 NCBI chr17:32,835,730...32,842,547
Ensembl chr17:32,836,777...32,842,176 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3826935|PMID:18832390)		 Ensembl
RGD		 PMID:18832390 GO_REF:0000107 MGI:3826935 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4818711|PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (PMID:28778798) RGD PMID:28778798 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2682066 (PMID:28778798)		 Ensembl
RGD		 PMID:28778798 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191|MGI:4415718 (PMID:18985738), (PMID:19653321) RGD PMID:18985738 PMID:19653321 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1306784 (PMID:18653562)		 Ensembl
RGD		 PMID:18653562 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (PMID:17584888) RGD PMID:17584888 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (PMID:17584888) RGD PMID:17584888 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:9811866) RGD PMID:9811866 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857515 (PMID:18436818)		 Ensembl
RGD		 PMID:18436818 GO_REF:0000107 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO MGI:1861722 (PMID:16207763), (PMID:16611695) RGD PMID:16207763 PMID:16611695 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO MGI:1353450|MGI:3043947 (PMID:16207763), (PMID:16611695) RGD PMID:16207763 PMID:16611695 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within ISO MGI:3044226 (PMID:15056605) RGD PMID:15056605 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO
IBA		 (PMID:25406291)
GO_REF:0000033		 RGD
GO_Central		 PMID:25406291 GO_REF:0000033 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:155,727,925...155,750,458
Ensembl chr 4:155,727,925...155,750,458 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (PMID:16207763) RGD PMID:16207763 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97857 (PMID:16207763) RGD PMID:16207763 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2159246 (PMID:10595508), (PMID:11830579)		 Ensembl
RGD		 PMID:10595508 PMID:11830579 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2653120 (PMID:19754878)		 Ensembl
RGD		 PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4818711|PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
ISS		 (MGI:3772525|PMID:18094249)
GO_REF:0000024		 RGD
UniProt		 PMID:18094249 GO_REF:0000024 MGI:3772525 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:12692551)
(MGI:2658694|PMID:12692551)		 RGD PMID:12692551 MGI:2658694 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:1344892 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856326 (PMID:14618389)		 Ensembl
RGD		 PMID:14618389 GO_REF:0000107 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318 		JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) RGD PMID:12630957 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Myh15 myosin, heavy chain 15 IEP RGD PMID:19948655 RGD:2317122 NCBI chr11:51,621,924...51,763,037
Ensembl chr11:51,622,413...51,762,971 		JBrowse link
G Myom1 myomesin 1 IEP RGD PMID:12878677 RGD:633368 NCBI chr 9:110,916,156...111,039,344
Ensembl chr 9:110,915,943...111,039,344 		JBrowse link
G Myom2 myomesin 2 IEP RGD PMID:12878677 RGD:633368 NCBI chr16:74,520,148...74,592,658
Ensembl chr16:74,520,157...74,592,772 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846 (PMID:16638982), (PMID:21035439) RGD PMID:16638982 PMID:21035439 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in IEA
ISO		 GO_REF:0000107
(PMID:16431952)		 Ensembl
RGD		 PMID:16431952 GO_REF:0000107 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:47,448,741...47,598,134
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:11456441) RGD PMID:11456441 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:2,840,741...3,084,935
Ensembl chr 5:2,840,765...3,084,929 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO MGI:2676366 (PMID:12915475), (PMID:21052544) RGD PMID:12915475 PMID:21052544 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 acts_upstream_of_or_within
involved_in		 ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:131,855,890...131,908,217
Ensembl chr 3:131,852,552...131,908,156 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO MGI:3612338 (PMID:16043865) RGD PMID:16043865 NCBI chr10:105,634,783...105,641,322
Ensembl chr10:105,634,783...105,641,322 		JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within ISO MGI:2446461 (PMID:12019334) RGD PMID:12019334 NCBI chr 5:47,445,280...47,489,929
Ensembl chr 5:47,452,150...47,489,809 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:16249514) RGD PMID:16249514 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (PMID:18367617) RGD PMID:18367617 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:202,729,610...202,952,120
Ensembl chr 2:202,729,936...202,952,112 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856158 (PMID:12648492)		 Ensembl
RGD		 PMID:12648492 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3605621|MGI:3608904|MGI:4881674 (PMID:20463215) RGD PMID:20463215 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within ISO MGI:3526850|MGI:3608904 (PMID:16267237) RGD PMID:16267237 NCBI chr 2:112,321,919...112,382,305
Ensembl chr 2:112,321,929...112,382,352 		JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(MGI:3652638|PMID:16574740)		 UniProt
RGD		 PMID:16574740 GO_REF:0000024 MGI:3652638 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO MGI:2386674 (PMID:12651948) RGD PMID:12651948 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO MGI:2655714 (PMID:12651948) RGD PMID:12651948 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:4397555 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (MGI:3614720|PMID:16465590) RGD PMID:16465590 MGI:3614720 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753 (PMID:14625556) RGD PMID:14625556 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO MGI:98354 (PMID:9030684) RGD PMID:9030684 NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:1856837 (PMID:21262862) RGD PMID:21262862 NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q04999 (MGI:2682175|PMID:14551263)		 UniProt
RGD		 PMID:14551263 GO_REF:0000024 MGI:2682175 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2673694 (PMID:25224220) RGD PMID:25224220 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Kmt2c lysine methyltransferase 2C acts_upstream_of_or_within ISO MGI:3693319 (PMID:17021013) RGD PMID:17021013 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:23201579), (PMID:25224220) RGD PMID:23201579 PMID:25224220 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3848564|PMID:19389375)		 UniProt
RGD		 PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5645931 (PMID:29450535)		 Ensembl
RGD		 PMID:29450535 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO MGI:95294 (PMID:9030684) RGD PMID:9030684 NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3052265|PMID:15254231)		 UniProt
RGD		 PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2445832|MGI:3522206 (PMID:20047077) RGD PMID:20047077 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(MGI:1313057|PMID:9811866)		 UniProt
RGD		 PMID:9811866 GO_REF:0000024 MGI:1313057 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6359287|PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6359287|PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within ISO (PMID:19557008) RGD PMID:19557008 NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704 		JBrowse link
G Opn4 opsin 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6359287|PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:6359287|PMID:30936473) RGD PMID:30936473 MGI:6359287 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6359287|PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc6a3 solute carrier family 6 member 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6359287|PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:29,709,443...29,750,413
Ensembl chr 1:29,709,443...29,750,413 		JBrowse link
G Th tyrosine hydroxylase involved_in ISS
ISO		 GO_REF:0000024
(MGI:6359287|PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:17064680
(MGI:3703484|PMID:17064680)		 RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:103223 (PMID:22627278)		 Ensembl
RGD		 PMID:22627278 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4818711|PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (PMID:7550230)
GO_REF:0000107		 RGD
Ensembl		 PMID:7550230 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9437321) RGD PMID:9437321 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:106918|MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO (PMID:27687499) RGD PMID:27687499 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 acts_upstream_of_or_within ISO MGI:3045749|MGI:5796183 (PMID:26218911) RGD PMID:26218911 NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606 		JBrowse link
G Casp6 caspase 6 IEP RGD PMID:15161922 RGD:2301319 NCBI chr 2:218,466,063...218,478,503
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
G Cdk2 cyclin dependent kinase 2 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:62,886,124...62,889,562
Ensembl chr 7:62,883,105...62,942,403 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2653120 (PMID:19754878)		 Ensembl
RGD		 PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA		 MGI:1858025|MGI:2653028|MGI:88516 (PMID:11687536), (PMID:16439475), (PMID:9023351)
GO_REF:0000033		 RGD
GO_Central		 PMID:9023351 PMID:11687536 PMID:16439475 PMID:8187157 GO_REF:0000033, RGD:1600991 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO MGI:88515 (PMID:16439475) RGD PMID:16439475 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Cryba1 crystallin, beta A1 involved_in IEP
IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter
RGD		 PMID:2753045 GO_REF:0000033 GO_REF:0000118, RGD:1298814 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Cryba2 crystallin, beta A2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:4950379 (PMID:21212184)		 GO_Central
RGD		 PMID:21212184 GO_REF:0000033 NCBI chr 9:76,447,250...76,457,968
Ensembl chr 9:76,447,251...76,450,460 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221 		JBrowse link
G Crybb1 crystallin, beta B1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:44,369,734...44,383,344
Ensembl chr12:44,369,735...44,383,344 		JBrowse link
G Crybb2 crystallin, beta B2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671 		JBrowse link
G Crybb3 crystallin, beta B3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:43,557,103...43,562,120
Ensembl chr12:43,557,103...43,562,120 		JBrowse link
G Crybg2 crystallin beta-gamma domain containing 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:146,286,406...146,318,417
Ensembl chr 5:146,286,925...146,323,666 		JBrowse link
G Crybg3 crystallin beta-gamma domain containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:40,749,198...40,861,753
Ensembl chr11:40,749,214...40,861,752 		JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA
IEA		 MGI:1856493|MGI:1857595 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8034315)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 PMID:2338125 GO_REF:0000033 GO_REF:0000118, RGD:2303725 NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within
involved_in		 IEP
ISO
IEA
IBA		 MGI:1857597|MGI:3777015 (PMID:12426373), (PMID:18172107), (PMID:8626090)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:8626090 PMID:12426373 PMID:18172107 PMID:2338125 GO_REF:0000033 GO_REF:0000118, RGD:2303725 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Crygc crystallin, gamma C involved_in IEP
IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter
RGD		 PMID:2338125 GO_REF:0000033 GO_REF:0000118, RGD:2303725 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA		 MGI:1858026|MGI:3762620 (PMID:10704279), (PMID:17652744)
GO_REF:0000033		 RGD
GO_Central		 PMID:10704279 PMID:17652744 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Cryge crystallin, gamma E involved_in IEP
IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central
RGD		 PMID:2338125 GO_REF:0000033 GO_REF:0000118, RGD:2303725 NCBI chr 9:66,429,924...66,432,521
Ensembl chr 9:66,429,924...66,433,274 		JBrowse link
G Crygf crystallin, gamma F involved_in IEP
IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter
RGD		 PMID:2338125 GO_REF:0000033 GO_REF:0000118, RGD:2303725 NCBI chr 9:67,448,265...67,450,429
Ensembl chr 9:67,447,954...67,450,429 		JBrowse link
G Crygn crystallin, gamma N involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:10,394,015...10,401,542
Ensembl chr 4:10,394,020...10,401,543 		JBrowse link
G Crygs crystallin, gamma S involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1861635 (PMID:6877261), (PMID:8034315)		 GO_Central
RGD		 PMID:6877261 PMID:8034315 GO_REF:0000033 NCBI chr11:78,207,170...78,212,273
Ensembl chr11:78,207,170...78,212,273 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter acts_upstream_of_or_within ISO MGI:2388945 (PMID:21897743) RGD PMID:21897743 NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2680670 (PMID:14645510)		 Ensembl
RGD		 PMID:14645510 GO_REF:0000107 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:17064680
(MGI:3703484|PMID:17064680)
GO_REF:0000024
(PMID:27218149)		 RGD
UniProt		 PMID:17064680 PMID:27218149 PMID:17064680 GO_REF:0000024 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3768912 (PMID:23136392) RGD PMID:23136392 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:2181200 (PMID:19623612) RGD PMID:19623612 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (PMID:9620080) RGD PMID:9620080 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:1857499 (PMID:6877261) RGD PMID:6877261 NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456 		JBrowse link
G Gje1 gap junction protein, epsilon 1 acts_upstream_of_or_within ISO MGI:3529958 (PMID:18385072) RGD PMID:18385072 NCBI chr 1:9,085,789...9,088,204
Ensembl chr 1:9,086,348...9,088,138 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO MGI:1862040 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8812411) RGD PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO MGI:2148635|MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:10603348), (PMID:12835653) RGD PMID:10383433 PMID:10603348 PMID:12835653 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2158098|PMID:11724781)		 UniProt
RGD		 PMID:11724781 GO_REF:0000024 MGI:2158098 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mip major intrinsic protein of lens fiber involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857105 (PMID:7333462)		 Ensembl
RGD		 PMID:7333462 GO_REF:0000107 NCBI chr 7:643,502...653,121
Ensembl chr 7:647,315...654,400 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:15716406) RGD PMID:15716406 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nhs NHS actin remodeling regulator involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1861111 (PMID:8282045)		 GO_Central
RGD		 PMID:8282045 GO_REF:0000033 NCBI chr  X:32,553,300...32,892,961
Ensembl chr  X:32,552,026...32,889,992 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2156742 (PMID:6877261)		 Ensembl
RGD		 PMID:6877261 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3722688 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within ISO MGI:3722688 (PMID:19412548) RGD PMID:19412548 NCBI chr12:202,481...345,596
Ensembl chr12:255,313...345,596 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279)		 UniProt
RGD		 PMID:19007884 PMID:19334279 GO_REF:0000024 MGI:3831639 MGI:4353482 NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:8812486) RGD PMID:8812486 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Pygo2 pygopus family PHD finger 2 acts_upstream_of_or_within ISO MGI:3712856 (PMID:17425782) RGD PMID:17425782 NCBI chr 2:174,849,670...174,854,758
Ensembl chr 2:174,849,936...174,854,758 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:1929788|PMID:11139622) RGD PMID:11139622 MGI:1929788 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Six5 SIX homeobox 5 acts_upstream_of_or_within ISO MGI:2148689|MGI:2148692 (PMID:10802667), (PMID:10802668) RGD PMID:10802667 PMID:10802668 NCBI chr 1:78,740,812...78,745,890
Ensembl chr 1:78,741,367...78,745,890 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (PMID:23543054) RGD PMID:23543054 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (PMID:24239381) RGD PMID:24239381 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4440463 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:11641223)		 Ensembl
RGD		 PMID:11641223 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:11641223)		 Ensembl
RGD		 PMID:11641223 GO_REF:0000107 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:15037121)		 Ensembl
GO_Central
RGD		 PMID:15037121 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:131,195,087...131,252,668
Ensembl chr 3:131,195,087...131,229,337 		JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO MGI:2671074 (PMID:15037121), (PMID:17065509) RGD PMID:15037121 PMID:17065509 NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:3777015 (PMID:18172107) RGD PMID:18172107 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679|MGI:3045749|MGI:95524 (PMID:18455718), (PMID:23136392) RGD PMID:18455718 PMID:23136392 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:95523 (PMID:18455718) RGD PMID:18455718 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3768912|MGI:97385 (PMID:23136392) RGD PMID:23136392 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2386105 (PMID:21118511) RGD PMID:21118511 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tmod1 tropomodulin 1 involved_in ISO
IEA		 UniProtKB:Q6NVD9 (MGI:5475090|PMID:23144950)
GO_REF:0000107		 RGD
Ensembl		 PMID:23144950 GO_REF:0000107 MGI:5475090 NCBI chr 5:60,316,445...60,393,957
Ensembl chr 5:60,338,512...60,393,956 		JBrowse link
G Vim vimentin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15037121)		 Ensembl
RGD		 PMID:15037121 GO_REF:0000107 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA		 MGI:3762620 (PMID:17652744)
GO_REF:0000107		 RGD
Ensembl		 PMID:17652744 PMID:8575616 GO_REF:0000107, RGD:1601018 NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within ISO (PMID:17215516) RGD PMID:17215516 NCBI chr 7:8,332,029...8,343,953
Ensembl chr 7:8,332,029...8,343,952 		JBrowse link
G Kdm5b lysine demethylase 5B IEP RGD PMID:24142921 RGD:9587771 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872 		JBrowse link
G Maf MAF bZIP transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:12835653)
GO_REF:0000033
GO_REF:0000118		 Ensembl
RGD
GO_Central
TreeGrafter		 PMID:10383433 PMID:12835653 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in ISO
IEA		 (MGI:4457460|PMID:20181838)
GO_REF:0000107		 RGD
Ensembl		 PMID:20181838 GO_REF:0000107 MGI:4457460 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:1100860 (PMID:23136392) RGD PMID:23136392 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISO (MGI:3831639|PMID:19007884) RGD PMID:19007884 MGI:3831639 NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Plaat1 phospholipase A and acyltransferase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:71,517,492...71,537,142
Ensembl chr11:71,517,493...71,527,020 		JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6710184|PMID:33854238)		 UniProt
RGD		 PMID:33854238 GO_REF:0000024 MGI:6710184 NCBI chr 1:204,782,608...204,816,397
Ensembl chr 1:204,782,729...204,817,667 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:2181466|PMID:12072567) RGD PMID:12072567 MGI:2181466 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Skil SKI-like proto-oncogene acts_upstream_of_or_within ISO (PMID:17215516) RGD PMID:17215516 NCBI chr 2:112,247,047...112,275,176
Ensembl chr 2:112,247,051...112,275,080 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 IEP RGD PMID:16043861 RGD:2315033 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:17215516) RGD PMID:17215516 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO
IBA
IEA
ISS		 (PMID:21436445)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
(MGI:4943339|PMID:21436445)		 RGD
GO_Central
Ensembl
UniProt		 PMID:21436445 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:4943339 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (PMID:17215516) RGD PMID:17215516 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:3525751 NCBI chr 9:61,827,186...61,905,703
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972)		 UniProt
RGD		 PMID:10096021 PMID:10885750 PMID:11806972 GO_REF:0000024 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3665275|MGI:3777403 (PMID:16799046), (PMID:18056999) RGD PMID:16799046 PMID:18056999 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:12426373), (PMID:8626090) RGD PMID:8626090 PMID:12426373 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Epha2 Eph receptor A2 involved_in ISO (MGI:3831440|PMID:18948590) RGD PMID:18948590 MGI:3831440 NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11850194)
(MGI:1332720|PMID:10080188)		 RGD PMID:10080188 PMID:11850194 MGI:1332720 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (PMID:24239381) RGD PMID:24239381 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857137 (PMID:9851982)		 Ensembl
RGD		 PMID:9851982 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4818711|PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (PMID:17140559) RGD PMID:17140559 NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:3693322 (PMID:17066077) RGD PMID:17066077 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (PMID:17140559) RGD PMID:17140559 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:10571739) RGD PMID:10571739 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO MGI:4359826 (PMID:19365570) RGD PMID:19365570 NCBI chr 2:210,525,260...210,638,674
Ensembl chr 2:210,525,260...210,638,798 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3696062 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1858023|MGI:3665274|MGI:3665275 (PMID:16799046), (PMID:8812430) RGD PMID:8812430 PMID:16799046 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2148567|MGI:3045749 (PMID:16102745)		 Ensembl
RGD		 PMID:16102745 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:11290300) RGD PMID:11290300 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Lctl lactase-like involved_in ISO (MGI:6274960|PMID:29425878) RGD PMID:29425878 MGI:6274960 NCBI chr 8:64,618,356...64,654,851
Ensembl chr 8:64,618,350...64,639,357 		JBrowse link
G Lgsn lengsin, lens protein with glutamine synthetase domain involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:33,416,362...33,447,919
Ensembl chr 9:33,420,484...33,447,907 		JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within ISO MGI:3029063 (PMID:14713950) RGD PMID:14713950 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (PMID:15728677) RGD PMID:15728677 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO MGI:3605481 (PMID:15728677) RGD PMID:15728677 NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4353482|PMID:19334279)		 UniProt
RGD		 PMID:19334279 GO_REF:0000024 MGI:4353482 NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188) RGD PMID:10080188 MGI:1332720 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:2137412 (PMID:9512512) RGD PMID:9512512 NCBI chr16:77,135,577...77,139,592
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3797299|PMID:18423449)		 UniProt
RGD		 PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(MGI:4943339|PMID:21436445)
(PMID:21436445)		 UniProt
GO_Central
Ensembl
RGD		 PMID:21436445 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:4943339 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:18224708), (PMID:9918694) RGD PMID:9918694 PMID:18224708 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3521833 (PMID:15569927) RGD PMID:15569927 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:3836138|PMID:11850194) RGD PMID:11850194 MGI:3836138 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2149672 (PMID:16038893)		 Ensembl
RGD		 PMID:16038893 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5316576|PMID:21875655)		 UniProt
RGD		 PMID:21875655 GO_REF:0000024 MGI:5316576 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:16199865
(MGI:1352262|PMID:10652278), (MGI:1861492|PMID:10890982), (MGI:3603877|PMID:16199865)		 RGD PMID:10652278 PMID:10890982 PMID:16199865 PMID:16199865 MGI:1352262 MGI:1861492 MGI:3603877, RGD:10047273 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Spred1 sprouty-related, EVH1 domain containing 1 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr 3:103,983,120...104,050,321
Ensembl chr 3:103,983,072...104,049,718 		JBrowse link
G Spred2 sprouty-related, EVH1 domain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6414698|PMID:29501879)		 UniProt
RGD		 PMID:29501879 GO_REF:0000024 MGI:6414698 NCBI chr14:94,149,210...94,250,787
Ensembl chr14:94,148,837...94,249,162 		JBrowse link
G Spred3 sprouty-related, EVH1 domain containing 3 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr 1:84,458,779...84,470,425
Ensembl chr 1:84,459,314...84,470,249 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr 2:120,557,256...120,561,917
Ensembl chr 2:120,556,706...120,566,189 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr15:82,692,291...82,697,408
Ensembl chr15:82,692,143...82,698,009 		JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857430 (PMID:10321489)		 Ensembl
RGD		 PMID:10321489 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (PMID:15363390) RGD PMID:15363390 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Tmem215 transmembrane protein 215 acts_upstream_of_or_within ISO (PMID:30370660) RGD PMID:30370660 NCBI chr 5:55,612,568...55,615,828
Ensembl chr 5:55,612,568...55,615,828 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 involved_in ISO (PMID:25622036) RGD PMID:25622036 NCBI chr 5:158,932,096...158,937,281
Ensembl chr 5:158,932,794...158,937,324 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:21441919)
MGI:2159015 (PMID:21441919)		 RGD PMID:21441919 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275 		JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:33,735,595...33,845,226
Ensembl chr 7:33,735,871...33,843,295 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:151,216,483...151,289,069
Ensembl chr  X:151,216,507...151,286,775 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
G Bsg basigin (Ok blood group) involved_in ISS
ISO		 GO_REF:0000024
(MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760)		 UniProt
RGD		 PMID:10967074 PMID:11273674 PMID:11853760 GO_REF:0000024 MGI:1888850 MGI:1932603 MGI:3610672 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:71,149,632...71,167,388
Ensembl chr 4:71,149,669...71,167,379 		JBrowse link
G Gpm6a glycoprotein m6a involved_in ISS
ISO		 GO_REF:0000024
(MGI:3811956|PMID:18776950)		 UniProt
RGD		 PMID:18776950 GO_REF:0000024 MGI:3811956 NCBI chr16:36,641,282...36,973,377
Ensembl chr16:36,641,284...36,973,475 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:15716406) RGD PMID:15716406 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:23,994,212...24,049,498
Ensembl chr 7:23,994,217...24,048,079 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:18816825)
(MGI:3809321|PMID:18816825)		 RGD PMID:18816825 MGI:3809321 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:894212 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (PMID:23129809) RGD PMID:23129809 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1861722 (PMID:16611695)		 Ensembl
RGD		 PMID:16611695 GO_REF:0000107 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1353450 (PMID:16611695)		 Ensembl
RGD		 PMID:16611695 GO_REF:0000107 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:84247|PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(MGI:4439459|PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (MGI:2136715|PMID:11458394) RGD PMID:11458394 MGI:2136715 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(MGI:4439459|PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5316576|PMID:21875655)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 MGI:5316576 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5316576|PMID:21875655)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 MGI:5316576 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) RGD PMID:18973577 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596 		JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:16199865
(PMID:22527307)
(MGI:1352262|PMID:10652278), (MGI:3603877|PMID:16199865)		 RGD PMID:10652278 PMID:16199865 PMID:22527307 PMID:16199865 PMID:22527307 MGI:1352262 MGI:3603877, RGD:10047273, RGD:10047255 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3797299|PMID:18423449)		 UniProt
RGD		 PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29501879)		 UniProt
RGD		 PMID:29501879 GO_REF:0000024 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:3604916|PMID:16162653) RGD PMID:16162653 MGI:3604916 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:218,466,063...218,478,503
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2663971 (PMID:12717433) RGD PMID:12717433 NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3574771|MGI:3583769 (PMID:18791178)
(MGI:3826935|PMID:18832390)		 Ensembl
RGD		 PMID:18791178 PMID:18832390 GO_REF:0000107 MGI:3826935 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO MGI:2183917|MGI:3045749 (PMID:17060454) RGD PMID:17060454 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:11120573 RGD:2303744 NCBI chr11:68,008,245...68,053,242 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931047 (PMID:10229225) RGD PMID:10229225 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within ISO MGI:99702 (PMID:15955981) RGD PMID:15955981 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1097161 (PMID:15955981) RGD PMID:15955981 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO MGI:96683 (PMID:22426483) RGD PMID:22426483 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (PMID:16466397) RGD PMID:16466397 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Kdr kinase insert domain receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:95558 (PMID:22426483)		 Ensembl
RGD		 PMID:22426483 GO_REF:0000107 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:24101522) RGD PMID:24101522 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (PMID:15363390) RGD PMID:15363390 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:12915475)
(PMID:15316081), (PMID:16885194)		 RGD PMID:12915475 PMID:15316081 PMID:16885194 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3761008 (PMID:18216855)		 Ensembl
RGD		 PMID:18216855 GO_REF:0000107 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (PMID:10097103) RGD PMID:10097103 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:104564 (PMID:9784491) RGD PMID:9784491 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:104565 (PMID:9784491) RGD PMID:9784491 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in ISO
IEA		 (MGI:5314555|PMID:22323600)
GO_REF:0000107		 RGD
Ensembl		 PMID:22323600 GO_REF:0000107 MGI:5314555 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO		 GO_REF:0000024
(MGI:3691257|PMID:17075007)		 UniProt
RGD		 PMID:17075007 GO_REF:0000024 MGI:3691257 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:4837018|PMID:20890044) RGD PMID:20890044 MGI:4837018 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:23932931) RGD PMID:23932931 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:11747369) RGD PMID:11747369 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:11747369)		 Ensembl
RGD		 PMID:11747369 GO_REF:0000107 NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:11747369) RGD PMID:11747369 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2179948 (PMID:15579149)		 Ensembl
RGD		 PMID:15579149 GO_REF:0000107 NCBI chr12:19,406,133...19,413,713
Ensembl chr12:19,407,360...19,413,651 		JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO MGI:1856535 (PMID:21052544), (PMID:24791901) RGD PMID:21052544 PMID:24791901 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (PMID:20592197) RGD PMID:20592197 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:31302159) RGD PMID:31302159 NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1857951 (PMID:10982921) RGD PMID:10982921 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within ISO (PMID:26975023) RGD PMID:26975023 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429 (PMID:9699561) RGD PMID:9699561 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:31302159) RGD PMID:31302159 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:31302159), (PMID:36700052) RGD PMID:31302159 PMID:36700052 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158497 (PMID:12654290) RGD PMID:12654290 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO MGI:3605845 (PMID:21052544) RGD PMID:21052544 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413 		JBrowse link
G Calb1 calbindin 1 involved_in ISO (MGI:1353814|PMID:10741426) RGD PMID:10741426 MGI:1353814 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:21052544), (PMID:31302159) RGD PMID:21052544 PMID:31302159 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 7:9,813,148...9,814,871
Ensembl chr 7:9,813,150...9,815,053 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within_positive_effect ISO (PMID:30705315)
(PMID:17921253), (PMID:28057640)		 RGD PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) RGD PMID:15300250 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr11:80,197,741...80,211,657
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:15565184), (PMID:21052544) RGD PMID:15565184 PMID:21052544 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:1353425|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:22447858), (PMID:25147295) RGD PMID:22447858 PMID:25147295 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:76,539,812...76,553,694
Ensembl chr 1:76,540,141...76,545,818 		JBrowse link
G Dclk1 doublecortin-like kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:139,417,234...139,710,956
Ensembl chr 2:139,417,163...139,710,956 		JBrowse link
G Dcx doublecortin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:107,430,767...107,573,612
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3848562|PMID:19389377)		 UniProt
RGD		 PMID:19389377 GO_REF:0000024 MGI:3848562 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 acts_upstream_of_or_within ISO (PMID:37691820) RGD PMID:37691820 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:196,396,366...196,400,824
Ensembl chr 1:196,396,366...196,399,553 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:1341818|MGI:1353425 (PMID:21052544), (PMID:21124780) RGD PMID:21052544 PMID:21124780 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnb1 G protein subunit beta 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 acts_upstream_of_or_within ISO MGI:3605835 (PMID:21052544) RGD PMID:21052544 NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (PMID:28728022) RGD PMID:28728022 NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:141,455,616...141,466,252
Ensembl chr 5:141,455,613...141,463,841 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:57,801,842...57,817,434
Ensembl chr 4:57,801,831...57,819,076 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:109,256,705...109,261,365
Ensembl chr 8:109,256,728...109,261,359 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3580706 (PMID:15345036)		 Ensembl
RGD		 PMID:15345036 GO_REF:0000107 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lamb2 laminin subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1344394 (PMID:19907020)		 Ensembl
RGD		 PMID:19907020 GO_REF:0000107 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549 		JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO MGI:99916 (PMID:19907020) RGD PMID:19907020 NCBI chr 3:15,165,220...15,226,697
Ensembl chr 3:15,165,220...15,226,697 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965|MGI:3510641 (PMID:16111892) RGD PMID:16111892 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:1353814|PMID:10741426) RGD PMID:10741426 MGI:1353814 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:97490 (PMID:19146846)		 Ensembl
RGD		 PMID:19146846 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:29,766,070...29,816,401
Ensembl chr 1:29,766,071...29,816,401 		JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:95,636,859...95,662,204
Ensembl chr 6:95,636,858...95,662,137 		JBrowse link
G Mdm1 Mdm1 nuclear protein involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000118
MGI:2664154 (PMID:21052544)
GO_REF:0000033		 TreeGrafter
RGD
GO_Central		 PMID:21052544 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:27654426) RGD PMID:27654426 NCBI chr 2:123,822,042...123,847,808
Ensembl chr 2:123,816,614...123,857,971 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:73,058,427...73,169,696
Ensembl chr 5:73,058,121...73,171,932 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445 (PMID:11283949), (PMID:9356462) RGD PMID:9356462 PMID:11283949 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:26607664) RGD PMID:26607664 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:9071226) RGD PMID:9071226 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (PMID:15728677) RGD PMID:15728677 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfia nuclear factor I/A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:6280648 (PMID:31128945)		 Ensembl
RGD		 PMID:31128945 GO_REF:0000107 NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:5052268 (PMID:31128945) RGD PMID:31128945 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:31128945) RGD PMID:31128945 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2176490|MGI:2176560 (PMID:11997145), (PMID:16702404) RGD PMID:11997145 PMID:16702404 NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO MGI:1346317 (PMID:12407160), (PMID:21052544) RGD PMID:12407160 PMID:21052544 NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEP RGD PMID:22714110 RGD:124713571 NCBI chr 3:41,689,847...41,707,036
Ensembl chr 3:41,689,851...41,697,877 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:25542970) RGD PMID:25542970 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO MGI:1341818|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Pax4 paired box 4 IEP RGD PMID:19012751 RGD:2311636 NCBI chr 4:57,058,453...57,065,995
Ensembl chr 4:57,058,462...57,063,408 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in		 IEP
ISO
IEA		 MGI:96785 (PMID:19146846)
GO_REF:0000107		 RGD
Ensembl		 PMID:19146846 PMID:19012751 GO_REF:0000107, RGD:2311636 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pde6a phosphodiesterase 6A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pfdn5 prefoldin subunit 5 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 7:133,451,778...133,456,516
Ensembl chr 7:133,451,453...133,456,516 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO MGI:2176272|MGI:3582493 (PMID:8637595), (PMID:9630743) RGD PMID:8637595 PMID:9630743 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367794|MGI:97998 (PMID:15964665), (PMID:21052544), (PMID:28053051) RGD PMID:15964665 PMID:21052544 PMID:28053051 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (PMID:11562477) RGD PMID:11562477 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Rd3 RD3 regulator of GUCY2D involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:52860|PMID:8486383)
(PMID:21052544)
GO_REF:0000033		 RGD
GO_Central		 PMID:8486383 PMID:21052544 GO_REF:0000033 MGI:52860 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:46,699,458...46,717,829
Ensembl chr13:46,699,463...46,717,998 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791|MGI:2181662 (PMID:28053051) RGD PMID:28053051 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(MGI:5546314|PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 MGI:5546314 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpl24 ribosomal protein L24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856685 (PMID:10049578), (PMID:9331275)		 Ensembl
RGD		 PMID:9331275 PMID:10049578 GO_REF:0000107 NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Scaper S-phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) RGD PMID:28794130 NCBI chr 8:55,932,717...56,332,222
Ensembl chr 8:55,933,306...56,332,122 		JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in ISO (PMID:28703795) RGD PMID:28703795 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO (PMID:37862028) RGD PMID:37862028 NCBI chr19:47,522,781...47,561,443
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Slc4a5 solute carrier family 4 member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:21705333)		 Ensembl
RGD		 PMID:21705333 GO_REF:0000107 NCBI chr 4:115,710,101...115,810,330
Ensembl chr 4:115,725,592...115,810,323 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:98371 (PMID:19490914)		 UniProt
RGD		 PMID:19490914 GO_REF:0000024 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:98370 (PMID:19490914)		 UniProt
RGD		 PMID:19490914 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4440463 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:3852642 (PMID:20711468) RGD PMID:20711468 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) RGD PMID:18973577 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:105,483,091...105,700,920
Ensembl chr 6:105,483,191...105,700,934 		JBrowse link
G Tub TUB bipartite transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:78,485,304...78,527,355
Ensembl chr15:78,485,315...78,527,355
Ensembl chr 3:78,485,315...78,527,355 		JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10595508)		 Ensembl
RGD		 PMID:10595508 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20797688)		 UniProt
RGD		 PMID:20797688 GO_REF:0000024 NCBI chr 6:25,174,181...25,177,442
Ensembl chr 6:25,174,178...25,177,439 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Arl6 ADP-ribosylation factor like GTPase 6 acts_upstream_of_or_within ISO MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371) RGD PMID:20333246 PMID:22139371 NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO (MGI:5574432|PMID:24413176) RGD PMID:24413176 MGI:5574432 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Calb1 calbindin 1 involved_in ISO (MGI:1353814|PMID:10741426) RGD PMID:10741426 MGI:1353814 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:17234588) RGD PMID:17234588 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Fat3 FAT atypical cadherin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1341907 (PMID:21903076)		 Ensembl
RGD		 PMID:21903076 GO_REF:0000107 NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO MGI:2444314 (PMID:21903076) RGD PMID:21903076 NCBI chr 3:88,774,220...88,776,321
Ensembl chr 3:88,774,220...88,776,321 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:3054139 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4818711|PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965|MGI:3510641 (PMID:16111892) RGD PMID:16111892 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:1353814|PMID:10741426), (MGI:3772525|PMID:18094249)		 UniProt
RGD		 PMID:10741426 PMID:18094249 GO_REF:0000024 MGI:1353814 MGI:3772525 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in ISO (MGI:5316136|PMID:22407321) RGD PMID:22407321 MGI:5316136 NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061 		JBrowse link
G Mir145 microRNA 145 IMP RGD PMID:34291866 RGD:155260301 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:29654250) RGD PMID:29654250 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Prom1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:3838023 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO		 GO_REF:0000024
(MGI:3691257|PMID:17075007)		 UniProt
RGD		 PMID:17075007 GO_REF:0000024 MGI:3691257 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISS
ISO		 GO_REF:0000024
(PMID:14623235)		 UniProt
RGD		 PMID:14623235 GO_REF:0000024 NCBI chr 9:106,639,573...107,343,698
Ensembl chr 9:106,639,573...107,343,698 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within ISO MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152) RGD PMID:11983912 PMID:15326152 NCBI chr  X:33,962,440...33,992,203
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:5693671 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in		 ISO MGI:2655190 (PMID:19766171)
MGI:2655190 (PMID:29677370)		 RGD PMID:19766171 PMID:29677370 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4410396|PMID:19837033)		 UniProt
RGD		 PMID:19837033 GO_REF:0000024 MGI:4410396 NCBI chr 4:50,313,768...50,389,246
Ensembl chr 4:50,313,772...50,389,246 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:12915475)
(PMID:17234588), (PMID:25147295)		 RGD PMID:12915475 PMID:17234588 PMID:25147295 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:3848562|PMID:19389377)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:19389377 GO_REF:0000024 GO_REF:0000107 MGI:3848562 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:6693686 (PMID:32265257)		 Ensembl
RGD		 PMID:32265257 GO_REF:0000107 NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) RGD PMID:15346351 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2159011|MGI:2673381 (PMID:20144606) RGD PMID:20144606 NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:5789479 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:15716406) RGD PMID:15716406 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO MGI:3605481 (PMID:15728677) RGD PMID:15728677 NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within ISO MGI:3701996 (PMID:17301087) RGD PMID:17301087 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) RGD PMID:20300562 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO MGI:2386674 (PMID:10725384) RGD PMID:10725384 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:3625176 (PMID:16651659) RGD PMID:16651659 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO MGI:1856112 (PMID:16854970), (PMID:8630490) RGD PMID:8630490 PMID:16854970 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in ISO
IEA		 (MGI:4436974|PMID:19903896)
GO_REF:0000107		 RGD
Ensembl		 PMID:19903896 GO_REF:0000107 MGI:4436974 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO MGI:2154690 (PMID:19005183) RGD PMID:19005183 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within ISO MGI:2387667 (PMID:23217714), (PMID:25083995), (PMID:25414188) RGD PMID:23217714 PMID:25083995 PMID:25414188 NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2386679 (PMID:21212189)		 Ensembl
RGD		 PMID:21212189 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965|MGI:3510641 (PMID:16111892) RGD PMID:16111892 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO MGI:2183279|MGI:3604604 (PMID:22272305), (PMID:25083995) RGD PMID:22272305 PMID:25083995 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within ISO (PMID:20947829) RGD PMID:20947829 NCBI chr10:20,068,451...20,068,560
Ensembl chr10:20,068,451...20,068,560 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,813,667...1,813,763
Ensembl chr17:1,813,667...1,813,763 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:23,954,831...23,954,917
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199|MGI:4414794 (PMID:15716406), (PMID:18978344), (PMID:23217714), (PMID:25083995), (PMID:25414188), (PMID:28575130), (PMID:29654250), (PMID:29715368) RGD PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO (PMID:25414188) RGD PMID:25414188 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS
ISO
IEA		 GO_REF:0000024
UniProtKB:P05622 (MGI:1931346|PMID:11239463)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11239463 GO_REF:0000024 GO_REF:0000107 MGI:1931346 NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P26618 (MGI:1931346|PMID:11239463), (MGI:2680741|PMID:14624252)		 UniProt
RGD		 PMID:11239463 PMID:14624252 GO_REF:0000024 MGI:1931346 MGI:2680741 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) RGD PMID:20300562 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (PMID:29715368) RGD PMID:29715368 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO (PMID:31698979) RGD PMID:31698979 NCBI chr16:8,120,336...8,200,272
Ensembl chr16:8,120,336...8,200,269 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within ISO MGI:3812708 (PMID:22535667) RGD PMID:22535667 NCBI chr10:53,650,521...53,663,269
Ensembl chr10:53,650,553...53,663,913 		JBrowse link
G Clic4 chloride intracellular channel 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3838012 (PMID:19197003)		 Ensembl
RGD		 PMID:19197003 GO_REF:0000107 NCBI chr 5:147,453,702...147,513,455
Ensembl chr 5:147,453,712...147,513,452 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12172548), (PMID:15024691)
MGI:102570|MGI:1278315|MGI:4412057 (PMID:19837032)
GO_REF:0000033		 RGD
GO_Central		 PMID:12172548 PMID:15024691 PMID:19837032 GO_REF:0000033 NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within IMP
ISO		 MGI:102570|MGI:108520|MGI:2183279|MGI:3774282 (PMID:11956231), (PMID:18263894), (PMID:19837032) RGD PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 RGD:40902996 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:108520|MGI:1278315|MGI:2676199 (PMID:18978344), (PMID:19837032) RGD PMID:18978344 PMID:19837032 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:5562961|PMID:24401374) RGD PMID:24401374 MGI:5562961 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within ISO MGI:4365246 (PMID:22535667) RGD PMID:22535667 NCBI chr 6:94,035,307...94,117,642
Ensembl chr 6:94,035,483...94,118,275 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (PMID:16249514) RGD PMID:16249514 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) RGD PMID:24467707 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO MGI:1890816 (PMID:18322081) RGD PMID:18322081 NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:3605621 (PMID:28199486) RGD PMID:28199486 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081) RGD PMID:14745032 PMID:15043821 PMID:18322081 NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO MGI:1856112 (PMID:8630490) RGD PMID:8630490 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (MGI:6214404|PMID:30146259) RGD PMID:30146259 MGI:6214404 NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:20818663) RGD PMID:20818663 NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4431324|PMID:20032512)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20032512 GO_REF:0000024 GO_REF:0000107 MGI:4431324 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO (MGI:3621833|PMID:15035989) RGD PMID:15035989 MGI:3621833 NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA		 (PMID:15024691), (PMID:15346351)
GO_REF:0000033
(MGI:6092915|PMID:27031698)		 RGD
GO_Central		 PMID:15024691 PMID:15346351 PMID:27031698 GO_REF:0000033 MGI:6092915 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:18978344), (PMID:22394677), (PMID:28575130) RGD PMID:18978344 PMID:22394677 PMID:28575130 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429 (PMID:14517994) RGD PMID:14517994 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:1857430 (PMID:10321489)		 Ensembl
RGD		 PMID:10321489 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of ISO MGI:3054837 (PMID:15363390) RGD PMID:15363390 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Faslg Fas ligand acts_upstream_of_or_within ISO MGI:1856384 (PMID:14517994) RGD PMID:14517994 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (PMID:16249514) RGD PMID:16249514 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:3608770 (PMID:21052544) RGD PMID:21052544 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) RGD PMID:23001562 MGI:5461109 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:20203194)
MGI:2664293 (PMID:20203194)		 RGD PMID:20203194 NCBI chr 6:129,285,747...129,287,608
Ensembl chr 6:129,285,749...129,286,660 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:17065522), (PMID:21052544) RGD PMID:17065522 PMID:21052544 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 2:49,495,771...49,899,983
Ensembl chr 2:49,495,771...49,899,774 		JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657) RGD PMID:21857657 NCBI chr15:38,842,014...38,842,098
Ensembl chr15:38,842,014...38,842,098 		JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO MGI:2676807 (PMID:21857657) RGD PMID:21857657 NCBI chr 2:100,134,866...100,134,974
Ensembl chr 2:100,134,866...100,134,974 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3652638|PMID:16574740)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 MGI:3652638 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:2676521 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Thrb thyroid hormone receptor beta involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
(PMID:20203194)		 Ensembl
RGD		 PMID:20203194 GO_REF:0000107 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISS
ISO		 GO_REF:0000024
(MGI:1349255|PMID:10567740)		 UniProt
RGD		 PMID:10567740 GO_REF:0000024 MGI:1349255 NCBI chr 8:44,389,495...44,394,688
Ensembl chr 8:44,389,513...44,394,659 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) RGD PMID:36125046 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779|MGI:95779 (PMID:19815523) RGD PMID:19815523 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:95778 (PMID:19815523) RGD PMID:19815523 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO MGI:1933835|MGI:3052237 (PMID:16452096) RGD PMID:16452096 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:23844226), (PMID:25991857) RGD PMID:23844226 PMID:25991857 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO (MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:2158098 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:5789479 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:9071226) RGD PMID:9071226 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:84247|PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4440463 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within ISO MGI:5811600 (PMID:33064130) RGD PMID:33064130 NCBI chr 1:143,006,343...143,279,824
Ensembl chr 1:143,006,344...143,221,171 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:16000322) RGD PMID:16000322 NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (PMID:15173597) RGD PMID:15173597 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (PMID:17255172) RGD PMID:17255172 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) RGD PMID:17921253 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO MGI:3665263 (PMID:16877424) RGD PMID:16877424 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:17712420) RGD PMID:17712420 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2152376 (PMID:11694879)		 GO_Central
RGD		 PMID:11694879 GO_REF:0000033 NCBI chr15:29,007,059...29,011,480
Ensembl chr15:29,008,104...29,009,832 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3039928 (PMID:10516311)		 Ensembl
RGD		 PMID:10516311 GO_REF:0000107 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16574740 PMID:19805139 GO_REF:0000024 GO_REF:0000107 MGI:3652638 MGI:4366105 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:2676521 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpgrip1l Rpgrip1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (MGI:6512737|PMID:33603070) RGD PMID:33603070 MGI:6512737 NCBI chr 5:166,831,681...166,859,805
Ensembl chr 5:166,831,663...166,850,009 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (MGI:6512737|PMID:33603070) RGD PMID:33603070 MGI:6512737 NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within ISO MGI:4421441 (PMID:19966281) RGD PMID:19966281 NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) RGD PMID:36125046 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
(PMID:15207851)		 Ensembl
RGD		 PMID:15207851 GO_REF:0000107 NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779|MGI:95779 (PMID:19815523) RGD PMID:19815523 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:95778 (PMID:19815523) RGD PMID:19815523 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:9071226) RGD PMID:9071226 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rorb RAR-related orphan receptor B acts_upstream_of_or_within ISO MGI:2158692 (PMID:25296752) RGD PMID:25296752 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:98371 (PMID:19490914)		 UniProt
RGD		 PMID:19490914 GO_REF:0000024 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:98370 (PMID:19490914)		 UniProt
RGD		 PMID:19490914 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15207851)		 Ensembl
RGD		 PMID:15207851 GO_REF:0000107 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:26607664) RGD PMID:26607664 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4947230 (PMID:32960171)		 Ensembl
RGD		 PMID:32960171 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
trabecular meshwork development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5544856|PMID:23979599)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:23979599 GO_REF:0000024 GO_REF:0000107 MGI:5544856 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
ISO		 PMID:17064680
(MGI:3703484|PMID:17064680)		 RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:20568247) RGD PMID:20568247 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    developmental process 7068
      anatomical structure development 6575
        animal organ development 3686
          sensory organ development 739
            eye development 489
              Bolwig's organ development + 0
              camera-type eye development + 438
              compound eye development + 0
              eye morphogenesis + 198
Path 2
Term Annotations click to browse term
  biological_process 20413
    developmental process 7068
      anatomical structure development 6575
        multicellular organism development 5290
          system development 4576
            sensory system development 499
              visual system development 492
                eye development 489
                  Bolwig's organ development + 0
                  camera-type eye development + 438
                  compound eye development + 0
                  eye morphogenesis + 198
paths to the root