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ONTOLOGY REPORT - ANNOTATIONS


Term:eye development
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Accession:GO:0001654 term browser browse the term
Definition:The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.
Synonyms:alt_id: GO:0042460
 xref: Wikipedia:Eye_development



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eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 involved_in IMP (MGI:5585659|PMID:25030174) UniProt PMID:25030174 MGI:5585659 NCBI chr12:118,867,486...118,966,434
Ensembl chr12:118,867,824...118,966,421
JBrowse link
G Adamts18 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:113,697,123...113,849,343
Ensembl chr 8:113,697,126...113,848,738
JBrowse link
G Atf6 activating transcription factor 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:170,704,457...170,868,585
Ensembl chr 1:170,704,674...170,867,771
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 (human) acts_upstream_of_or_within IGI (MGI:5314314|PMID:22228099) MGI PMID:22228099 MGI:5314314 NCBI chr 3:36,573,142...36,613,492
Ensembl chr 3:36,573,142...36,613,477
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,505,783...19,508,380
Ensembl chr 7:19,504,486...19,508,367
JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT|involved_in IGI (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IGI (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chr13:38,345,716...38,500,314
Ensembl chr13:38,345,107...38,500,302
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IMP (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IMP (MGI:2181740|PMID:12117821) MGI PMID:12117821 MGI:2181740 NCBI chr 3:141,837,135...142,169,585
Ensembl chr 3:141,837,136...142,169,425
JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:143,285,674...143,394,263
Ensembl chr  X:143,285,674...143,394,262
JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within IMP (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr 1:65,100,389...65,103,363
Ensembl chr 1:65,100,389...65,103,373
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within IMP (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr 1:65,080,222...65,082,290
Ensembl chr 1:65,080,219...65,082,288
JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within IMP (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr 1:65,071,525...65,073,532
Ensembl chr 1:65,071,525...65,073,689
JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within IMP (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr 1:65,061,838...65,063,440
Ensembl chr 1:65,061,872...65,063,452
JBrowse link
G Cryge crystallin, gamma E acts_upstream_of_or_within IMP (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr 1:65,048,555...65,051,816
Ensembl chr 1:65,048,554...65,051,149
JBrowse link
G Crygf crystallin, gamma F acts_upstream_of_or_within IMP (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr 1:65,926,522...65,928,311
Ensembl chr 1:65,926,520...65,928,307
JBrowse link
G Cst3 cystatin C ISO RGD PMID:11431459 RGD:2306512 NCBI chr 2:148,871,722...148,875,512
Ensembl chr 2:148,871,722...148,875,692
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in IMP (MGI:5291533|PMID:21858205) CACAO PMID:21858205 MGI:5291533 NCBI chr14:58,070,671...58,112,854
Ensembl chr14:58,070,547...58,112,720
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IMP
ISO
(MGI:1335260|PMID:10072431)
(MGI:1314784|PMID:9792859)
(MGI:1261705|PMID:9635428)
MGI PMID:9635428 PMID:9792859 PMID:10072431 MGI:1261705 MGI:1314784 MGI:1335260 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:1352262|PMID:10652278) MGI PMID:10652278 GO_REF:0000096 MGI:1352262 MGI:4834177 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Frem2 Fras1 related extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
IMP
ISO
(MGI:6368066|PMID:30802441)
(MGI:5646594|PMID:26234751)
UniProt
MGI
PMID:26234751 PMID:30802441 GO_REF:0000096 MGI:4834177 MGI:5646594 MGI:6368066 NCBI chr 3:53,513,938...53,658,593
Ensembl chr 3:53,513,938...53,657,355
JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:122,605,403...122,610,087
Ensembl chr 6:122,605,403...122,610,087
JBrowse link
G Gm7298 predicted gene 7298 involved_in ISO (PMID:27839872) UniProt PMID:27839872 NCBI chr 6:121,734,495...121,784,639
Ensembl chr 6:121,732,932...121,789,084
JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within IMP (MGI:1339514|PMID:10391216) MGI PMID:10391216 MGI:1339514 NCBI chr 5:149,046,702...149,053,057
Ensembl chr 5:149,046,702...149,184,489
JBrowse link
G Hsf4 heat shock transcription factor 4 acts_upstream_of_or_within IMP (MGI:3056236|PMID:15343150) MGI PMID:15343150 MGI:3056236 NCBI chr 8:105,269,414...105,275,845
Ensembl chr 8:105,269,801...105,275,845
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IGI (MGI:5314314|PMID:22228099) MGI PMID:22228099 MGI:5314314 NCBI chr14:57,424,064...57,517,936
Ensembl chr14:57,424,062...57,517,936
JBrowse link
G Inhbb inhibin beta-B involved_in TAS (MGI:1861888|PMID:10932194) UniProt PMID:10932194 MGI:1861888 NCBI chr 1:119,415,463...119,422,248
Ensembl chr 1:119,415,465...119,422,248
JBrowse link
G Mab21l1 mab-21-like 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:55,782,510...55,785,287
Ensembl chr 3:55,782,510...55,785,001
JBrowse link
G Mab21l2 mab-21-like 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:86,546,050...86,548,283
Ensembl chr 3:86,545,581...86,548,629
JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:18,880,428...19,019,651
Ensembl chr11:18,879,817...19,018,985
JBrowse link
G Meis2 Meis homeobox 2 involved_in
acts_upstream_of_or_within
IBA
IGI
(MGI:6201960|PMID:21873635)
(MGI:2384485|PMID:12183364)
GO_Central
MGI
PMID:12183364 PMID:21873635 MGI:2384485 MGI:6201960 NCBI chr 2:115,861,264...116,067,537
Ensembl chr 2:115,863,064...116,065,839
JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:16,174,012...16,186,510
Ensembl chr 7:16,175,090...16,186,504
JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:168,119,364...168,432,365
Ensembl chr 1:168,119,364...168,432,270
JBrowse link
G Pbx2 pre B cell leukemia homeobox 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:34,592,259...34,597,400
Ensembl chr17:34,591,266...34,597,400
JBrowse link
G Pbx3 pre B cell leukemia homeobox 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:34,171,457...34,372,045
Ensembl chr 2:34,171,457...34,373,142
JBrowse link
G Pbx4 pre B cell leukemia homeobox 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:69,832,476...69,872,292
Ensembl chr 8:69,832,491...69,872,292
JBrowse link
G Rbp4 retinol binding protein 4, plasma involved_in ISO
IMP
(MGI:3604178|PMID:15994349) MGI
BHF-UCL
PMID:15994349 GO_REF:0000096 MGI:3604178 MGI:4834177 NCBI chr19:38,116,620...38,125,321
Ensembl chr19:38,116,629...38,125,281
JBrowse link
G Sall2 spalt like transcription factor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:52,311,177...52,328,670
Ensembl chr14:52,311,172...52,328,762
JBrowse link
G Sco2 SCO2 cytochrome c oxidase assembly protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:89,371,630...89,373,891
Ensembl chr15:89,371,637...89,373,846
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO
IMP
(MGI:4439252|PMID:20137777) MGI
UniProt
PMID:20137777 GO_REF:0000096 MGI:4439252 MGI:4834177 NCBI chr11:32,347,773...32,428,189
Ensembl chr11:32,347,820...32,428,173
JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 involved_in IMP (MGI:5697095|PMID:26231217) UniProt PMID:26231217 MGI:5697095 NCBI chr 7:29,320,372...29,519,161
Ensembl chr 7:29,320,372...29,518,641
JBrowse link
G Six3 sine oculis-related homeobox 3 acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
(MGI:2182264|PMID:12050133)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12050133 PMID:21873635 GO_REF:0000096 MGI:2182264 MGI:4834177 MGI:6201960 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Six6 sine oculis-related homeobox 6 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:72,939,882...72,944,899
Ensembl chr12:72,939,892...72,944,899
JBrowse link
G Slc39a5 solute carrier family 39 (metal ion transporter), member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:128,395,927...128,401,276
Ensembl chr10:128,395,931...128,401,229
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in IMP (MGI:5775676|PMID:27018474) UniProt PMID:27018474 MGI:5775676 NCBI chr 7:24,397,517...24,422,777
Ensembl chr 7:24,399,619...24,422,778
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in IMP
ISO
(MGI:4939981|PMID:21194678) UniProt
MGI
PMID:21194678 GO_REF:0000096 MGI:4834177 MGI:4939981 NCBI chr12:81,026,808...81,186,414
Ensembl chr12:81,026,808...81,186,414
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 involved_in ISO (PMID:18285410) UniProt PMID:18285410 NCBI chr 3:34,649,995...34,652,461
Ensembl chr 3:34,650,405...34,652,461
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Zdhhc16 zinc finger, DHHC domain containing 16 involved_in IMP (MGI:5706675|PMID:26644582) UniProt PMID:26644582 MGI:5706675 NCBI chr19:41,933,445...41,944,104
Ensembl chr19:41,933,480...41,944,104
JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 involved_in IMP (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chr 5:114,254,164...114,274,418
Ensembl chr 5:114,254,164...114,273,807
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IDA (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr11:11,684,962...11,772,930
Ensembl chr11:11,685,003...11,772,926
JBrowse link
G Miat myocardial infarction associated transcript (non-protein coding) acts_upstream_of_or_within IMP (MGI:4458994|PMID:20459797) MGI PMID:20459797 MGI:4458994 NCBI chr 5:112,213,228...112,228,948
Ensembl chr 5:112,213,228...112,229,395
JBrowse link
G Neurod1 neurogenic differentiation 1 involved_in IDA (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chr 2:79,452,637...79,456,636
Ensembl chr 2:79,452,521...79,456,751
JBrowse link
G Neurod4 neurogenic differentiation 4 involved_in IDA (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chr10:130,268,152...130,280,254
Ensembl chr10:130,268,152...130,280,240
JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in IMP (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr 2:19,445,663...19,447,501
Ensembl chr 2:19,445,663...19,447,501
JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chr19:18,930,609...19,111,196
Ensembl chr19:18,930,605...19,111,196
JBrowse link
avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsdma3 gasdermin A3 acts_upstream_of_or_within IMP (MGI:1206161|PMID:9617549) MGI PMID:9617549 MGI:1206161 NCBI chr11:98,626,349...98,638,801
Ensembl chr11:98,626,360...98,638,226
JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 acts_upstream_of_or_within IMP (MGI:3525751|PMID:15572692) MGI PMID:15572692 MGI:3525751 NCBI chr 1:60,405,768...60,481,945
Ensembl chr 1:60,409,619...60,481,158
JBrowse link
G Ahr aryl-hydrocarbon receptor involved_in IMP (MGI:1889403|PMID:10973493) DFLAT PMID:10973493 MGI:1889403 NCBI chr12:35,497,979...35,534,989
Ensembl chr12:35,497,974...35,535,038
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (MGI:3612223|PMID:16368932)
(MGI:3055706|PMID:15366004)
MGI PMID:15366004 PMID:16368932 MGI:3055706 MGI:3612223 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within IMP (MGI:1926242|PMID:11044403) MGI PMID:11044403 MGI:1926242 NCBI chr 7:16,494,473...16,614,993
Ensembl chr 7:16,493,719...16,614,993
JBrowse link
G B9d1 B9 protein domain 1 acts_upstream_of_or_within IMP (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr11:61,505,144...61,512,931
Ensembl chr11:61,505,144...61,512,931
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP
IGI
(MGI:1095762|PMID:9268572)
(MGI:3043486|PMID:14681194)
MGI PMID:9268572 PMID:14681194 MGI:1095762 MGI:3043486 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IGI (MGI:3574003|PMID:15673568) MGI PMID:15673568 MGI:3574003 NCBI chr 3:141,837,135...142,169,585
Ensembl chr 3:141,837,136...142,169,425
JBrowse link
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:118,587,240...119,197,384
Ensembl chr 6:118,587,240...119,196,890
Ensembl chr 6:118,587,240...119,196,890
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within IMP (MGI:5696765|PMID:24947469) MGI PMID:24947469 MGI:5696765 NCBI chr 5:43,662,374...43,740,975
Ensembl chr 5:43,662,346...43,740,972
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C (P57) acts_upstream_of_or_within IMP (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr 7:143,458,339...143,461,059
Ensembl chr 7:143,458,339...143,461,050
JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IMP (MGI:3611161|PMID:16207732) MGI PMID:16207732 MGI:3611161 NCBI chr 4:8,690,402...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IGI (MGI:2682441|PMID:12546709) MGI PMID:12546709 MGI:2682441 NCBI chr17:31,677,931...31,681,730
Ensembl chr17:31,677,807...31,681,733
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within IGI (MGI:2682441|PMID:12546709) MGI PMID:12546709 MGI:2682441 NCBI chr 9:50,745,951...50,756,636
Ensembl chr 9:50,751,325...50,756,636
JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within IMP (MGI:1350675|PMID:10585769) MGI PMID:10585769 MGI:1350675 NCBI chr11:77,718,614...77,725,293
Ensembl chr11:77,718,615...77,725,283
JBrowse link
G Cryba4 crystallin, beta A4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:112,246,492...112,263,625
Ensembl chr 5:112,246,493...112,252,518
JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within IMP
ISO
(MGI:2137502|PMID:11381063) MGI
RGD
PMID:8706714 PMID:11381063 MGI:2137502 RGD:1298813 NCBI chr 5:113,058,258...113,070,117
Ensembl chr 5:113,058,258...113,070,117
JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within IMP (MGI:2156903|PMID:11773036) MGI PMID:11773036 MGI:2156903 NCBI chr 1:65,071,525...65,073,532
Ensembl chr 1:65,071,525...65,073,689
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO RGD PMID:15967433 RGD:2306661 NCBI chr 9:57,687,928...57,703,824
Ensembl chr 9:57,687,928...57,703,824
JBrowse link
G Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr11:28,853,154...28,926,743
Ensembl chr11:28,853,204...28,926,743
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IMP (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 8:44,933,100...45,052,257
Ensembl chr 8:44,935,447...45,052,257
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 2:125,300,594...125,506,485
Ensembl chr 2:125,300,594...125,507,993
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr18:58,008,623...58,210,572
Ensembl chr18:58,008,623...58,210,487
JBrowse link
G Fkbp8 FK506 binding protein 8 acts_upstream_of_or_within IMP (MGI:3039989|PMID:15105374) MGI PMID:15105374 MGI:3039989 NCBI chr 8:70,527,721...70,535,328
Ensembl chr 8:70,527,724...70,535,328
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IMP (MGI:1355577|PMID:10767326)
(MGI:1340945|PMID:10395790)
MGI PMID:10395790 PMID:10767326 MGI:1340945 MGI:1355577 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (MGI:1355577|PMID:10767326) MGI PMID:10767326 MGI:1355577 NCBI chr 8:121,116,171...121,118,895
Ensembl chr 8:121,116,171...121,118,895
JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within IMP (MGI:1932584|PMID:11309658) MGI PMID:11309658 MGI:1932584 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within IMP (MGI:3723373|PMID:17619227) MGI PMID:17619227 MGI:3723373 NCBI chr 6:14,901,349...15,441,977
Ensembl chr 6:14,901,349...15,441,977
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP (MGI:3713422|PMID:17525797) MGI PMID:17525797 MGI:3713422 NCBI chr13:60,174,405...60,177,535
Ensembl chr13:60,174,405...60,177,365
JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within IMP (MGI:2156142|PMID:11782410)
(MGI:3047041|PMID:15253273)
MGI PMID:11782410 PMID:15253273 MGI:2156142 MGI:3047041 NCBI chr 3:96,913,566...96,926,051
Ensembl chr 3:96,913,566...96,926,020
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Gpd2 glycerol phosphate dehydrogenase 2, mitochondrial acts_upstream_of_or_within IGI (MGI:4947900|PMID:21296886) MGI PMID:21296886 MGI:4947900 NCBI chr 2:57,237,678...57,370,719
Ensembl chr 2:57,237,635...57,370,719
JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (MGI:4943100|PMID:21377456) MGI PMID:21377456 MGI:4943100 NCBI chr15:37,232,821...37,363,569
Ensembl chr15:37,233,036...37,363,569
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in IMP (MGI:3703278|PMID:17331197) UniProt PMID:17331197 MGI:3703278 NCBI chr 4:154,960,626...154,962,372
Ensembl chr 4:154,960,923...154,962,371
JBrowse link
G Hesx1 homeobox gene expressed in ES cells acts_upstream_of_or_within IMP (MGI:3821905|PMID:19093031) MGI PMID:19093031 MGI:3821905 NCBI chr14:26,994,419...27,002,329
Ensembl chr14:26,994,416...27,002,329
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chr13:58,391,132...58,403,343
Ensembl chr13:58,391,142...58,403,343
JBrowse link
G Hsf4 heat shock transcription factor 4 acts_upstream_of_or_within IMP (MGI:3721138|PMID:16595169)
(MGI:3056833|PMID:15483628)
MGI PMID:15483628 PMID:16595169 MGI:3056833 MGI:3721138 NCBI chr 8:105,269,414...105,275,845
Ensembl chr 8:105,269,801...105,275,845
JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
G Jag1 jagged 1 acts_upstream_of_or_within IMP (MGI:1336582|PMID:10196361) MGI PMID:10196361 MGI:1336582 NCBI chr 2:137,081,451...137,116,520
Ensembl chr 2:137,081,456...137,116,644
JBrowse link
G Lama1 laminin, alpha 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:67,697,127...67,822,645
Ensembl chr17:67,697,259...67,822,647
JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within IMP (MGI:1197732|PMID:9238094) MGI PMID:9238094 MGI:1197732 NCBI chr 7:43,430,099...43,435,996
Ensembl chr 7:43,430,088...43,435,996
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within IMP (MGI:1353150|PMID:10660670)
(MGI:4461349|PMID:20568247)
MGI PMID:10660670 PMID:20568247 MGI:1353150 MGI:4461349 NCBI chr 2:33,560,965...33,641,208
Ensembl chr 2:33,560,965...33,640,511
Ensembl chr 2:33,560,965...33,640,511
JBrowse link
G Mab21l1 mab-21-like 1 acts_upstream_of_or_within IMP (MGI:2652201|PMID:12642482) MGI PMID:12642482 MGI:2652201 NCBI chr 3:55,782,510...55,785,287
Ensembl chr 3:55,782,510...55,785,001
JBrowse link
G Mab21l2 mab-21-like 2 acts_upstream_of_or_within IMP (MGI:3510098|PMID:15385160) MGI PMID:15385160 MGI:3510098 NCBI chr 3:86,546,050...86,548,283
Ensembl chr 3:86,545,581...86,548,629
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within IMP (MGI:2674169|PMID:12941696) MGI PMID:12941696 MGI:2674169 NCBI chr13:111,746,428...111,818,269
Ensembl chr13:111,746,428...111,808,993
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (MGI:2682174|PMID:14500757) MGI PMID:14500757 MGI:2682174 NCBI chr11:98,152,154...98,193,313
Ensembl chr11:98,152,154...98,193,293
JBrowse link
G Mitf melanogenesis associated transcription factor acts_upstream_of_or_within IGI (MGI:3512656|PMID:15576400) MGI PMID:15576400 MGI:3512656 NCBI chr 6:97,807,002...98,021,360
Ensembl chr 6:97,807,052...98,021,349
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within IMP (MGI:5287350|PMID:21531335) MGI PMID:21531335 MGI:5287350 NCBI chr 1:93,301,205...93,305,879
Ensembl chr 1:93,299,211...93,305,915
JBrowse link
G Mtnr1a melatonin receptor 1A ISO RGD PMID:12890503 RGD:9588674 NCBI chr 8:45,069,107...45,089,233
Ensembl chr 8:45,069,137...45,088,506
JBrowse link
G Mtnr1b melatonin receptor 1B ISO RGD PMID:12890503 RGD:9588674 NCBI chr 9:15,862,614...15,874,556
Ensembl chr 9:15,824,528...15,874,556
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (MGI:3849775|PMID:19531352) MGI PMID:19531352 MGI:3849775 NCBI chr10:107,482,908...107,486,927
Ensembl chr10:107,482,908...107,486,134
JBrowse link
G Neurod1 neurogenic differentiation 1 acts_upstream_of_or_within IGI (MGI:2158684|PMID:11861467) MGI PMID:11861467 MGI:2158684 NCBI chr 2:79,452,637...79,456,636
Ensembl chr 2:79,452,521...79,456,751
JBrowse link
G Neurod4 neurogenic differentiation 4 acts_upstream_of_or_within IGI (MGI:2158684|PMID:11861467) MGI PMID:11861467 MGI:2158684 NCBI chr10:130,268,152...130,280,254
Ensembl chr10:130,268,152...130,280,240
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IMP (MGI:3582135|PMID:16000615)
(MGI:3054148|PMID:15371513)
MGI PMID:15371513 PMID:16000615 MGI:3054148 MGI:3582135 NCBI chr10:42,561,963...42,583,590
Ensembl chr10:42,561,963...42,583,632
JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within IMP (MGI:2662558|PMID:12756174) MGI PMID:12756174 MGI:2662558 NCBI chr19:44,746,601...44,838,269
Ensembl chr19:44,756,045...44,837,871
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI
IMP
(MGI:2181466|PMID:12072567)
(MGI:2654287|PMID:12648492), (MGI:3584303|PMID:16080917)
(MGI:2384485|PMID:12183364)
(MGI:2662558|PMID:12756174)
(MGI:1927276|PMID:11069887)
(MGI:1928799|PMID:11062307)
MGI PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... MGI:1927276 MGI:1928799 MGI:2181466 MGI:2384485 MGI:2654287 MGI:2662558 MGI:3584303 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pcnt pericentrin (kendrin) acts_upstream_of_or_within IMP (MGI:5696764|PMID:25220058) MGI PMID:25220058 MGI:5696764 NCBI chr10:76,351,254...76,442,912
Ensembl chr10:76,351,263...76,442,786
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Pknox1 Pbx/knotted 1 homeobox acts_upstream_of_or_within IMP (MGI:3653971|PMID:16847320) MGI PMID:16847320 MGI:3653971 NCBI chr17:31,564,722...31,607,693
Ensembl chr17:31,564,734...31,607,693
JBrowse link
G Prss56 protease, serine 56 acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:5441705|PMID:21532570) MGI PMID:21532570 GO_REF:0000096 MGI:4834177 MGI:5441705 NCBI chr 1:87,183,102...87,188,405
Ensembl chr 1:87,183,313...87,188,405
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein subunit 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:127,868,755...127,943,876
Ensembl chr 1:127,868,773...127,943,868
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (MGI:1096258|PMID:9376317) MGI PMID:9376317 MGI:1096258 NCBI chr15:102,234,938...102,257,522
Ensembl chr15:102,234,938...102,257,517
JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within IMP (MGI:48767|PMID:17247120), (MGI:54439|PMID:640224), (MGI:61292|PMID:13970081)
(MGI:1929394|PMID:11105055), (MGI:3575215|PMID:15789424)
MGI PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 MGI:1929394 MGI:3575215 MGI:48767 MGI:54439 MGI:61292 NCBI chr18:65,934,639...65,939,089
Ensembl chr18:65,928,277...65,939,787
JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within IMP (MGI:4355498|PMID:19474196) MGI PMID:19474196 MGI:4355498 NCBI chr 2:105,385,948...105,399,319
Ensembl chr 2:105,386,291...105,399,319
JBrowse link
G Rpe65 retinal pigment epithelium 65 ISO RGD PMID:9512345 RGD:633787 NCBI chr 3:159,599,075...159,625,307
Ensembl chr 3:159,599,175...159,625,321
JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within IMP (MGI:3715393|PMID:17553904), (MGI:3716248|PMID:17558409) MGI PMID:17553904 PMID:17558409 MGI:3715393 MGI:3716248 NCBI chr 8:91,217,030...91,313,291
Ensembl chr 8:91,217,030...91,313,262
JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within IGI (MGI:1096258|PMID:9376317) MGI PMID:9376317 MGI:1096258 NCBI chr 2:27,676,445...27,763,319
Ensembl chr 2:27,676,440...27,762,957
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP
IGI
IDA
(MGI:2662556|PMID:12756179)
(MGI:3807419|PMID:18582859)
(MGI:3608482|PMID:16236765)
(MGI:2385969|PMID:12195432)
MGI PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 MGI:2385969 MGI:2662556 MGI:3608482 MGI:3807419 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chr  X:152,609,509...152,770,788
Ensembl chr  X:152,609,509...152,769,465
JBrowse link
G Six3 sine oculis-related homeobox 3 acts_upstream_of_or_within IGI (MGI:2181466|PMID:12072567) MGI PMID:12072567 MGI:2181466 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Slc25a25 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 acts_upstream_of_or_within IGI (MGI:4947900|PMID:21296886) MGI PMID:21296886 MGI:4947900 NCBI chr 2:32,414,487...32,451,470
Ensembl chr 2:32,414,487...32,451,445
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IMP (MGI:5513052|PMID:23543054) MGI PMID:23543054 MGI:5513052 NCBI chr14:110,747,338...110,755,204
Ensembl chr14:110,748,580...110,755,149
JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within IMP (MGI:3029604|PMID:14757819) MGI PMID:14757819 MGI:3029604 NCBI chr 2:152,293,826...152,313,994
Ensembl chr 2:152,293,828...152,313,996
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr10:56,014,293...56,228,968
Ensembl chr10:56,014,293...56,228,689
JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within IMP (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr 8:111,912,007...111,933,813
Ensembl chr 8:111,912,011...111,933,881
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within IMP (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chr 7:98,350,668...98,361,390
Ensembl chr 7:98,350,668...98,361,328
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within IGI (MGI:3043486|PMID:14681194) MGI PMID:14681194 MGI:3043486 NCBI chr17:65,923,065...65,951,187
Ensembl chr17:65,921,972...65,951,226
JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within IGI (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chr19:59,164,480...59,170,397
Ensembl chr19:59,166,187...59,170,056
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IGI (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chr 6:83,711,239...83,738,313
Ensembl chr 6:83,711,264...83,738,313
JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IGI (MGI:3512656|PMID:15576400) MGI PMID:15576400 MGI:3512656 NCBI chr12:84,569,828...84,595,457
Ensembl chr12:84,569,762...84,595,457
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within IMP (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chr11:21,571,969...21,898,687
Ensembl chr11:21,572,235...21,898,989
JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of_or_within IMP (MGI:2176638|PMID:11889045)
(MGI:3574744|PMID:15716344)
MGI PMID:11889045 PMID:15716344 MGI:2176638 MGI:3574744 NCBI chr 2:105,126,529...105,173,614
Ensembl chr 2:105,126,529...105,173,616
JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 acts_upstream_of_or_within IMP (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr 6:55,336,299...55,348,555
Ensembl chr 6:55,336,432...55,348,555
JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within IMP (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr15:99,591,028...99,594,829
Ensembl chr15:99,590,782...99,594,829
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IMP (MGI:3701027|PMID:16854970)
(MGI:3610441|PMID:16154126)
MGI PMID:16154126 PMID:16854970 MGI:3610441 MGI:3701027 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Col8a1 collagen, type VIII, alpha 1 acts_upstream_of_or_within IGI (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr16:57,624,256...57,754,737
Ensembl chr16:57,624,258...57,754,737
JBrowse link
G Col8a2 collagen, type VIII, alpha 2 acts_upstream_of_or_within IGI (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr 4:126,286,794...126,314,330
Ensembl chr 4:126,286,793...126,314,330
JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within IMP (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 9:101,922,128...102,354,693
Ensembl chr 9:101,922,128...102,354,693
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within IMP (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 4:136,647,536...136,836,326
Ensembl chr 4:136,647,539...136,835,988
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IMP (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 8:44,933,100...45,052,257
Ensembl chr 8:44,935,447...45,052,257
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IMP (MGI:3581514|PMID:15976303) MGI PMID:15976303 MGI:3581514 NCBI chr10:128,880,524...128,891,718
Ensembl chr10:128,882,295...128,891,718
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:52587|PMID:8387379) MGI PMID:8387379 MGI:52587 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:124,739,183...124,741,069
Ensembl chr 6:124,739,183...124,741,374
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IGI (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within IMP (MGI:3589043|PMID:16104381) MGI PMID:16104381 MGI:3589043 NCBI chr 4:147,873,586...147,904,909
Ensembl chr 4:147,873,599...147,904,704
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 9:43,737,075...43,807,461
Ensembl chr 9:43,743,984...43,832,658
Ensembl chr 9:43,743,984...43,832,658
JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within IMP (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chr11:79,339,590...79,581,609
Ensembl chr11:79,339,693...79,581,612
JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within IGI (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr17:34,020,792...34,024,680
Ensembl chr17:34,020,792...34,024,680
JBrowse link
G Scrib scribbled planar cell polarity involved_in TAS (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr15:76,047,162...76,069,784
Ensembl chr15:76,047,158...76,069,784
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chr  X:152,609,509...152,770,788
Ensembl chr  X:152,609,509...152,769,465
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:48,225,665...49,522,824
Ensembl chr 8:48,227,682...48,843,951
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IGI
IMP
(MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within IGI (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr12:108,792,945...108,820,148
Ensembl chr12:108,792,973...108,820,148
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in IMP
ISO
IBA
(MGI:3838023|PMID:19228982)
(MGI:6201960|PMID:21873635)
UniProt
MGI
GO_Central
PMID:19228982 PMID:21873635 GO_REF:0000096 MGI:3838023 MGI:4834177 MGI:6201960 NCBI chr 5:43,993,621...44,102,047
Ensembl chr 5:43,993,620...44,102,032
JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr19:8,927,382...8,929,356
Ensembl chr19:8,927,391...8,929,356
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in IDA (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr11:113,776,374...114,067,029
Ensembl chr11:113,776,374...114,067,046
JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr14:14,703,011...14,799,944
Ensembl chr14:14,702,279...14,799,940
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IMP (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chr12:98,920,537...98,983,250
Ensembl chr12:98,920,574...98,983,238
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Jag1 jagged 1 acts_upstream_of_or_within IMP (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chr 2:137,081,451...137,116,520
Ensembl chr 2:137,081,456...137,116,644
JBrowse link
G Notch2 notch 2 acts_upstream_of_or_within IMP (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chr 3:98,013,538...98,150,367
Ensembl chr 3:98,013,527...98,150,361
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within IMP (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chr 7:98,350,668...98,361,390
Ensembl chr 7:98,350,668...98,361,328
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IMP (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in IMP (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chr 4:132,355,922...132,422,446
Ensembl chr 4:132,355,923...132,422,489
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Kera keratocan acts_upstream_of_or_within IMP (MGI:1855733|PMID:10802664) MGI PMID:10802664 MGI:1855733 NCBI chr10:97,606,962...97,613,688
Ensembl chr10:97,606,879...97,613,692
JBrowse link
G Krt12 keratin 12 involved_in
acts_upstream_of_or_within
IMP
ISO
(MGI:5752087|PMID:26758872)
(MGI:85415|PMID:8977471)
UniProt
MGI
PMID:8977471 PMID:26758872 GO_REF:0000096 MGI:4834177 MGI:5752087 MGI:85415 NCBI chr11:99,415,664...99,422,593
Ensembl chr11:99,415,666...99,422,259
JBrowse link
G Limk2 LIM motif-containing protein kinase 2 acts_upstream_of_or_within IMP (MGI:5646594|PMID:26234751) MGI PMID:26234751 MGI:5646594 NCBI chr11:3,343,297...3,409,276
Ensembl chr11:3,344,256...3,409,189
JBrowse link
G Pax6 paired box 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:3610667|PMID:16186342) MGI PMID:16186342 MGI:3610667 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 acts_upstream_of_or_within IMP (MGI:4949824|PMID:20574024) MGI PMID:20574024 MGI:4949824 NCBI chr 1:91,801,461...91,848,034
Ensembl chr 1:91,801,461...91,848,028
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IGI (MGI:3700411|PMID:17184764) MGI PMID:17184764 MGI:3700411 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within
involved_in
IGI
IMP
(MGI:3700411|PMID:17184764)
(MGI:3042765|PMID:14623956)
MGI
UniProt
PMID:14623956 PMID:17184764 MGI:3042765 MGI:3700411 NCBI chr 7:66,390,892...66,427,477
Ensembl chr 7:66,390,890...66,427,517
JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within IMP (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr13:64,432,319...64,439,722
Ensembl chr13:64,432,314...64,441,773
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:3588480|PMID:15958512) MGI PMID:15958512 MGI:3588480 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within IMP (MGI:3821812|PMID:18791178) MGI PMID:18791178 MGI:3821812 NCBI chr 1:64,730,558...64,737,750
Ensembl chr 1:64,730,558...64,737,751
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr17:25,016,083...25,099,499
Ensembl chr17:25,016,085...25,099,495
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (MGI:1344731|PMID:10498698)
(MGI:1347482|PMID:10572050)
MGI PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within IMP (MGI:3530389|PMID:15661756) MGI PMID:15661756 MGI:3530389 NCBI chr 7:19,359,724...19,378,540
Ensembl chr 7:19,359,749...19,378,533
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IGI (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chr11:98,927,800...98,974,942
Ensembl chr11:98,927,818...98,974,942
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chr15:102,234,938...102,257,522
Ensembl chr15:102,234,938...102,257,517
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chr 1:16,105,882...16,132,550
Ensembl chr 1:16,105,774...16,133,734
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IMP (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr 1:91,494,590...91,529,307
Ensembl chr 1:91,494,647...91,529,307
JBrowse link
G Tulp3 tubby-like protein 3 acts_upstream_of_or_within IMP (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (MGI:5314316|PMID:22228095) MGI PMID:22228095 MGI:5314316 NCBI chr 5:65,199,696...65,260,415
Ensembl chr 5:65,199,696...65,260,415
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IMP (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IGI (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr10:17,723,228...17,725,674
Ensembl chr10:17,723,218...17,725,674
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (MGI:3775669|PMID:18056999) MGI PMID:18056999 MGI:3775669 NCBI chr17:31,677,931...31,681,730
Ensembl chr17:31,677,807...31,681,733
JBrowse link
G Foxf2 forkhead box F2 involved_in IMP (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chr13:31,625,816...31,631,406
Ensembl chr13:31,625,816...31,631,403
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IMP (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chr 1:64,730,558...64,737,750
Ensembl chr 1:64,730,558...64,737,751
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,739,815...103,791,894
Ensembl chr 3:103,739,815...103,791,563
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,687,512...38,876,331
Ensembl chr 6:38,694,390...38,876,165
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within IMP (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IMP (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 5:31,253,279...31,291,391
Ensembl chr 5:31,253,277...31,291,116
JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
G Kdm2b lysine (K)-specific demethylase 2B involved_in IMP (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr 5:122,870,664...122,989,270
Ensembl chr 5:122,870,665...122,989,823
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (MGI:4413396|PMID:19653321)
(MGI:3823171|PMID:18985738)
MGI PMID:18985738 PMID:19653321 MGI:3823171 MGI:4413396 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Sp1 trans-acting transcription factor 1 acts_upstream_of_or_within IGI (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr15:102,406,316...102,436,404
Ensembl chr15:102,406,143...102,436,404
JBrowse link
G Sp3 trans-acting transcription factor 3 acts_upstream_of_or_within IGI (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr 2:72,936,430...72,980,446
Ensembl chr 2:72,936,427...72,980,446
JBrowse link
G Tbx2 T-box 2 involved_in IMP (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chr11:85,832,615...85,841,948
Ensembl chr11:85,832,551...85,841,948
JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
G Th tyrosine hydroxylase involved_in IMP (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr 7:142,892,779...142,899,995
Ensembl chr 7:142,892,752...142,931,128
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chr18:5,591,327...5,775,468
Ensembl chr18:5,591,860...5,775,467
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IGI (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr19:20,492,583...20,643,463
Ensembl chr19:20,492,715...20,643,465
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within IGI
IMP
(MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)
MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 7:66,390,892...66,427,477
Ensembl chr 7:66,390,890...66,427,517
JBrowse link
G Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr11:28,853,154...28,926,743
Ensembl chr11:28,853,204...28,926,743
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 2:125,300,594...125,506,485
Ensembl chr 2:125,300,594...125,507,993
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr18:58,008,623...58,210,572
Ensembl chr18:58,008,623...58,210,487
JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within IMP (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chr 9:98,955,607...98,958,126
Ensembl chr 9:98,955,288...98,958,543
JBrowse link
G Mfap2 microfibrillar-associated protein 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:141,010,424...141,015,976
Ensembl chr 4:141,010,418...141,015,984
JBrowse link
G Mfap5 microfibrillar associated protein 5 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:122,513,584...122,529,290
Ensembl chr 6:122,505,845...122,529,290
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within IGI (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr14:16,430,839...17,082,331
Ensembl chr14:16,430,839...16,819,156
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr15:102,234,938...102,257,522
Ensembl chr15:102,234,938...102,257,517
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IDA
IMP
(MGI:1349226|PMID:10595508)
(MGI:2157790|PMID:11830579)
MGI PMID:10595508 PMID:11830579 MGI:1349226 MGI:2157790 NCBI chr 6:83,711,239...83,738,313
Ensembl chr 6:83,711,264...83,738,313
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr 9:35,421,528...35,507,652
Ensembl chr 9:35,421,128...35,507,652
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,739,815...103,791,894
Ensembl chr 3:103,739,815...103,791,563
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,687,512...38,876,331
Ensembl chr 6:38,694,390...38,876,165
JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (MGI:4413396|PMID:19653321) MGI PMID:19653321 MGI:4413396 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Prox1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO
IEP
(PMID:12692551) BHF-UCL
BHF-UCL
PMID:12692551 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
G Rbp4 retinol binding protein 4, plasma involved_in IMP (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chr19:38,116,620...38,125,321
Ensembl chr19:38,116,629...38,125,281
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in IMP (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 8:44,933,100...45,052,257
Ensembl chr 8:44,935,447...45,052,257
JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium channel, voltage-dependent, L type, alpha 1S subunit acts_upstream_of_or_within IMP (MGI:3613415|PMID:14618389) MGI PMID:14618389 MGI:3613415 NCBI chr 1:136,052,806...136,119,822
Ensembl chr 1:136,052,750...136,119,822
JBrowse link
G Foxl2 forkhead box L2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:98,955,607...98,958,126
Ensembl chr 9:98,955,288...98,958,543
JBrowse link
G Myh15 myosin, heavy chain 15 ISO RGD PMID:19948655 RGD:2317122 NCBI chr16:49,057,400...49,199,563
Ensembl chr16:49,057,486...49,199,104
JBrowse link
G Myom1 myomesin 1 ISO RGD PMID:12878677 RGD:633368 NCBI chr17:71,003,332...71,126,856
Ensembl chr17:71,002,633...71,126,856
JBrowse link
G Myom2 myomesin 2 ISO RGD PMID:12878677 RGD:633368 NCBI chr 8:15,057,653...15,133,420
Ensembl chr 8:15,057,653...15,133,541
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (MGI:3624183|PMID:16638982)
(MGI:4881620|PMID:21035439)
MGI PMID:16638982 PMID:21035439 MGI:3624183 MGI:4881620 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen, type V, alpha 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:27,886,381...28,039,510
Ensembl chr 2:27,886,425...28,039,514
JBrowse link
G Col5a2 collagen, type V, alpha 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:45,374,331...45,503,282
Ensembl chr 1:45,374,321...45,503,282
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP (MGI:2138055|PMID:11456441) MGI PMID:11456441 MGI:2138055 NCBI chr13:60,174,405...60,177,535
Ensembl chr13:60,174,405...60,177,365
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 involved_in ISO RGD
MGI
PMID:22940085 GO_REF:0000096 MGI:4417868 RGD:10043154 NCBI chr 1:16,228,803...16,520,332
Ensembl chr 1:16,228,674...16,520,112
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IDA (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)
MGI PMID:12915475 PMID:21052544 MGI:2675211 MGI:4849309 NCBI chr 1:139,176,649...139,379,316
Ensembl chr 1:139,197,056...139,377,100
JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:144,470,555...144,527,507
Ensembl chr 2:144,470,557...144,527,414
JBrowse link
G Fscn2 fascin actin-bundling protein 2 acts_upstream_of_or_within IMP (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chr11:120,360,165...120,368,173
Ensembl chr11:120,361,534...120,368,168
JBrowse link
G Gabrr2 gamma-aminobutyric acid (GABA) C receptor, subunit rho 2 NOT|acts_upstream_of_or_within IMP (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chr 4:33,057,712...33,095,865
Ensembl chr 4:33,062,999...33,095,865
JBrowse link
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 acts_upstream_of_or_within IMP (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr 9:107,674,437...107,679,634
Ensembl chr 9:107,674,474...107,679,712
JBrowse link
G Gngt1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 acts_upstream_of_or_within IMP (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 6:3,989,082...3,997,436
Ensembl chr 6:3,993,792...3,997,436
JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 9:44,101,770...44,109,187
Ensembl chr 9:44,101,729...44,109,187
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 9:59,942,771...59,960,834
Ensembl chr 9:59,942,771...59,960,659
JBrowse link
G Olfm3 olfactomedin 3 involved_in ISO RGD
MGI
PMID:12019210 GO_REF:0000096 MGI:4417868 RGD:633402 NCBI chr 3:114,904,078...115,125,764
Ensembl chr 3:114,904,078...115,125,722
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr15:79,995,865...80,024,614
Ensembl chr15:79,995,874...80,014,977
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain acts_upstream_of_or_within IMP (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chr10:44,437,174...44,528,558
Ensembl chr10:44,437,177...44,528,501
JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within IMP (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chr 3:30,995,742...31,052,740
Ensembl chr 3:30,995,747...31,052,959
JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) acts_upstream_of_or_within IMP (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr 7:4,425,665...4,471,280
Ensembl chr 7:4,424,770...4,445,649
JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr19:18,930,609...19,111,196
Ensembl chr19:18,930,605...19,111,196
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IMP (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr  X:10,158,216...10,216,795
Ensembl chr  X:10,073,621...10,216,920
JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 acts_upstream_of_or_within IMP (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr14:52,104,241...52,161,339
Ensembl chr14:52,110,704...52,163,546
JBrowse link
G Th tyrosine hydroxylase involved_in IMP (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr 7:142,892,779...142,899,995
Ensembl chr 7:142,892,752...142,931,128
JBrowse link
G Tulp1 tubby like protein 1 involved_in IMP (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr17:28,351,515...28,365,216
Ensembl chr17:28,351,515...28,365,222
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 involved_in IMP (MGI:3614720|PMID:16465590) UniProt PMID:16465590 MGI:3614720 NCBI chr13:59,449,534...59,557,370
Ensembl chr13:59,445,742...59,585,227
JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within IMP (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr11:100,886,806...100,939,594
Ensembl chr11:100,885,098...100,939,540
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within IGI (MGI:85697|PMID:9030684) MGI PMID:9030684 MGI:85697 NCBI chr11:16,752,203...16,913,907
Ensembl chr11:16,752,203...16,918,158
JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within IMP (MGI:4947318|PMID:21262862) MGI PMID:21262862 MGI:4947318 NCBI chr 4:135,541,887...135,573,632
Ensembl chr 4:135,541,888...135,573,630
JBrowse link
G Hdac1 histone deacetylase 1 involved_in IGI (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hdac2 histone deacetylase 2 involved_in IGI (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Inhba inhibin beta-A involved_in IGI (MGI:2682175|PMID:14551263) UniProt PMID:14551263 MGI:2682175 NCBI chr13:16,004,256...16,031,609
Ensembl chr13:16,011,851...16,031,621
JBrowse link
G Jun jun proto-oncogene acts_upstream_of_or_within IMP (MGI:5608927|PMID:25224220) MGI PMID:25224220 MGI:5608927 NCBI chr 4:95,049,036...95,052,222
Ensembl chr 4:95,049,034...95,052,222
JBrowse link
G Kmt2c lysine (K)-specific methyltransferase 2C acts_upstream_of_or_within IMP (MGI:3692812|PMID:17021013) MGI PMID:17021013 MGI:3692812 NCBI chr 5:25,271,795...25,498,855
Ensembl chr 5:25,271,798...25,498,783
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within IMP (MGI:5467663|PMID:23201579), (MGI:5608927|PMID:25224220) MGI PMID:23201579 PMID:25224220 MGI:5467663 MGI:5608927 NCBI chr13:111,746,428...111,818,269
Ensembl chr13:111,746,428...111,808,993
JBrowse link
G Osr2 odd-skipped related 2 involved_in IMP (MGI:3848564|PMID:19389375) UniProt PMID:19389375 MGI:3848564 NCBI chr15:35,296,098...35,303,305
Ensembl chr15:35,296,098...35,303,305
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within IGI (MGI:85697|PMID:9030684) MGI PMID:9030684 MGI:85697 NCBI chr17:80,393,752...80,480,453
Ensembl chr17:80,393,751...80,480,453
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (MGI:4421610|PMID:20047077) MGI PMID:20047077 MGI:4421610 NCBI chr17:46,546,838...46,558,267
Ensembl chr17:46,548,329...46,556,175
JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in IMP (MGI:1313057|PMID:9811866) UniProt PMID:9811866 MGI:1313057 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox protein 1 involved_in IMP (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in IMP (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr 9:49,340,360...49,408,177
Ensembl chr 9:49,340,627...49,408,177
JBrowse link
G Flt1 FMS-like tyrosine kinase 1 involved_in IMP (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr 5:147,561,604...147,726,438
Ensembl chr 5:147,561,604...147,726,011
JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within IMP (MGI:4940188|PMID:19557008) MGI PMID:19557008 MGI:4940188 NCBI chr13:49,187,529...49,196,251
Ensembl chr13:49,187,485...49,196,244
JBrowse link
G Opn4 opsin 4 (melanopsin) involved_in IMP (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr14:34,590,618...34,600,142
Ensembl chr14:34,590,618...34,600,142
JBrowse link
G Opn5 opsin 5 involved_in IMP (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr17:42,556,779...42,611,430
Ensembl chr17:42,556,783...42,611,395
JBrowse link
G Slc17a6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 involved_in IMP (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr 7:51,621,830...51,671,126
Ensembl chr 7:51,622,006...51,671,119
JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 involved_in IDA (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr13:73,536,128...73,578,672
Ensembl chr13:73,536,747...73,578,672
JBrowse link
G Th tyrosine hydroxylase involved_in IMP (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr 7:142,892,779...142,899,995
Ensembl chr 7:142,892,752...142,931,128
JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IGI (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,739,815...103,791,894
Ensembl chr 3:103,739,815...103,791,563
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,687,512...38,876,331
Ensembl chr 6:38,694,390...38,876,165
JBrowse link
G Pax6 paired box 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IGI
IMP
(MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 6:113,623,994...113,631,634
Ensembl chr 6:113,623,959...113,631,633
JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc7 baculoviral IAP repeat-containing 7 (livin) acts_upstream_of_or_within IMP (MGI:5766584|PMID:26218911) MGI PMID:26218911 MGI:5766584 NCBI chr 2:180,928,609...180,934,010
Ensembl chr 2:180,929,023...180,934,010
JBrowse link
G Casp6 caspase 6 ISO RGD PMID:15161922 RGD:2301319 NCBI chr 3:129,901,415...129,914,112
Ensembl chr 3:129,901,425...129,914,103
JBrowse link
G Cdk2 cyclin-dependent kinase 2 ISO RGD PMID:10620399 RGD:724665 NCBI chr10:128,697,938...128,705,051
Ensembl chr10:128,697,939...128,705,031
JBrowse link
G Cdk4 cyclin-dependent kinase 4 ISO RGD PMID:10620399 RGD:724665 NCBI chr10:127,063,535...127,067,288
Ensembl chr10:127,063,534...127,067,920
JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr 9:35,421,528...35,507,652
Ensembl chr 9:35,421,128...35,507,652
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IGI
ISO
IMP
(MGI:3617146|PMID:16439475)
(MGI:3617146|PMID:16439475), (MGI:85598|PMID:9023351)
(MGI:2154010|PMID:11687536)
MGI
RGD
PMID:8187157 PMID:9023351 PMID:11687536 PMID:16439475 MGI:2154010 MGI:3617146 MGI:85598 RGD:1600991 NCBI chr17:31,677,931...31,681,730
Ensembl chr17:31,677,807...31,681,733
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within IGI (MGI:3617146|PMID:16439475) MGI PMID:16439475 MGI:3617146 NCBI chr 9:50,745,951...50,756,636
Ensembl chr 9:50,751,325...50,756,636
JBrowse link
G Cryba1 crystallin, beta A1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
RGD
PMID:2753045 PMID:21873635 MGI:6201960 RGD:1298814 NCBI chr11:77,718,614...77,725,293
Ensembl chr11:77,718,615...77,725,283
JBrowse link
G Cryba2 crystallin, beta A2 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:4950336|PMID:21212184)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21212184 PMID:21873635 MGI:4950336 MGI:6201960 NCBI chr 1:74,889,934...74,898,842
Ensembl chr 1:74,889,934...74,893,143
JBrowse link
G Cryba4 crystallin, beta A4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:112,246,492...112,263,625
Ensembl chr 5:112,246,493...112,252,518
JBrowse link
G Crybb1 crystallin, beta B1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:112,254,563...112,269,585
Ensembl chr 5:112,255,815...112,269,585
JBrowse link
G Crybb2 crystallin, beta B2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:113,058,258...113,070,117
Ensembl chr 5:113,058,258...113,070,117
JBrowse link
G Crybb3 crystallin, beta B3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:113,075,839...113,082,236
Ensembl chr 5:113,075,839...113,081,584
JBrowse link
G Crybg3 beta-gamma crystallin domain containing 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:59,492,088...59,601,047
Ensembl chr16:59,490,775...59,600,979
JBrowse link
G Cryga crystallin, gamma A involved_in
acts_upstream_of_or_within
IBA
IMP
ISO
(MGI:6201960|PMID:21873635)
(MGI:65639|PMID:8034315), (MGI:71783|PMID:7088001)
(MGI:1333159|PMID:6510713), (MGI:69851|PMID:6877261)
GO_Central
MGI
RGD
PMID:2338125 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 More... MGI:1333159 MGI:6201960 MGI:65639 MGI:69851 MGI:71783 RGD:2303725 NCBI chr 1:65,100,389...65,103,363
Ensembl chr 1:65,100,389...65,103,373
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090)
(MGI:6201960|PMID:21873635)
(MGI:3776178|PMID:18172107)
MGI
RGD
GO_Central
PMID:2338125 PMID:8626090 PMID:12426373 PMID:18172107 PMID:21873635 MGI:3691890 MGI:3776178 MGI:6201960 MGI:81294 RGD:2303725 NCBI chr 1:65,080,222...65,082,290
Ensembl chr 1:65,080,219...65,082,288
JBrowse link
G Crygc crystallin, gamma C involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
RGD
PMID:2338125 PMID:21873635 MGI:6201960 RGD:2303725 NCBI chr 1:65,071,525...65,073,532
Ensembl chr 1:65,071,525...65,073,689
JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(MGI:3762268|PMID:17652744)
(MGI:6201960|PMID:21873635)
(MGI:1354024|PMID:10704279)
MGI
RGD
GO_Central
PMID:2338125 PMID:10704279 PMID:17652744 PMID:21873635 MGI:1354024 MGI:3762268 MGI:6201960 RGD:2303725 NCBI chr 1:65,061,838...65,063,440
Ensembl chr 1:65,061,872...65,063,452
JBrowse link
G Cryge crystallin, gamma E acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:65639|PMID:8034315)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:8034315 PMID:21873635 MGI:6201960 MGI:65639 NCBI chr 1:65,048,555...65,051,816
Ensembl chr 1:65,048,554...65,051,149
JBrowse link
G Crygf crystallin, gamma F involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:65,926,522...65,928,311
Ensembl chr 1:65,926,520...65,928,307
JBrowse link
G Crygn crystallin, gamma N involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:24,751,002...24,757,848
Ensembl chr 5:24,751,003...24,758,008
JBrowse link
G Crygs crystallin, gamma S acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:65639|PMID:8034315), (MGI:69851|PMID:6877261)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:6877261 PMID:8034315 PMID:21873635 MGI:6201960 MGI:65639 MGI:69851 NCBI chr16:22,805,203...22,811,410
Ensembl chr16:22,805,203...22,811,577
JBrowse link
G Ctns cystinosis, nephropathic acts_upstream_of_or_within IMP (MGI:5302597|PMID:21897743) MGI PMID:21897743 MGI:5302597 NCBI chr11:73,183,133...73,199,115
Ensembl chr11:73,183,596...73,199,042
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within IMP (MGI:2682188|PMID:14645510) MGI PMID:14645510 MGI:2682188 NCBI chr16:31,663,443...31,873,356
Ensembl chr16:31,663,443...31,875,129
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IMP (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 8:44,933,100...45,052,257
Ensembl chr 8:44,935,447...45,052,257
JBrowse link
G Foxe3 forkhead box E3 involved_in IMP
ISO
(MGI:3703484|PMID:17064680) UniProt
MGI
PMID:17064680 GO_REF:0000096 MGI:3703484 MGI:4834177 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (MGI:4354418|PMID:19623612) MGI PMID:19623612 MGI:4354418 NCBI chr 2:9,857,078...9,887,953
Ensembl chr 2:9,857,078...9,890,034
JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within IMP (MGI:1267300|PMID:9620080) MGI PMID:9620080 MGI:1267300 NCBI chr10:56,377,300...56,390,419
Ensembl chr10:56,377,330...56,402,513
JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within IMP (MGI:69851|PMID:6877261) MGI PMID:6877261 MGI:69851 NCBI chr 3:96,913,566...96,926,051
Ensembl chr 3:96,913,566...96,926,020
JBrowse link
G Gje1 gap junction protein, epsilon 1 acts_upstream_of_or_within IMP (MGI:3795311|PMID:18385072) MGI PMID:18385072 MGI:3795311 NCBI chr10:14,715,626...14,718,214
Ensembl chr10:14,715,623...14,718,214
JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within IMP (MGI:1333159|PMID:6510713), (MGI:69851|PMID:6877261), (MGI:71783|PMID:7088001), (MGI:82332|PMID:8812411) MGI PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 MGI:1333159 MGI:69851 MGI:71783 MGI:82332 NCBI chr 7:43,430,099...43,435,996
Ensembl chr 7:43,430,088...43,435,996
JBrowse link
G Maf avian musculoaponeurotic fibrosarcoma oncogene homolog acts_upstream_of_or_within IMP (MGI:1350584|PMID:10603348)
(MGI:1340085|PMID:10383433)
(MGI:3760711|PMID:12835653)
MGI PMID:10383433 PMID:10603348 PMID:12835653 MGI:1340085 MGI:1350584 MGI:3760711 NCBI chr 8:115,703,253...115,706,894
Ensembl chr 8:115,682,942...115,707,794
JBrowse link
G Med1 mediator complex subunit 1 involved_in IMP (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chr11:98,152,154...98,193,313
Ensembl chr11:98,152,154...98,193,293
JBrowse link
G Mip major intrinsic protein of lens fiber acts_upstream_of_or_within IMP (MGI:55175|PMID:7333462) MGI PMID:7333462 MGI:55175 NCBI chr10:128,225,810...128,231,812
Ensembl chr10:128,225,838...128,231,812
JBrowse link
G Nhs NHS actin remodeling regulator involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:64544|PMID:8282045)
GO_Central
MGI
PMID:8282045 PMID:21873635 MGI:6201960 MGI:64544 NCBI chr  X:161,833,290...162,159,441
Ensembl chr  X:161,833,296...162,159,730
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (MGI:69851|PMID:6877261) MGI PMID:6877261 MGI:69851 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within IMP (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 5:65,605,719...65,698,236
Ensembl chr 5:65,605,721...65,698,273
JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within IMP (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 5:150,673,713...150,810,669
Ensembl chr 5:150,673,739...150,810,690
JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 involved_in IMP (MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279) UniProt PMID:19007884 PMID:19334279 MGI:3831639 MGI:4353482 NCBI chr19:46,135,281...46,148,325
Ensembl chr19:46,135,685...46,148,326
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:8812486) BHF-UCL PMID:8812486 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
G Pygo2 pygopus 2 acts_upstream_of_or_within IMP (MGI:3712628|PMID:17425782) MGI PMID:17425782 MGI:3712628 NCBI chr 3:89,430,114...89,435,131
Ensembl chr 3:89,430,214...89,435,128
JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IDA (MGI:1929788|PMID:11139622) UniProt PMID:11139622 MGI:1929788 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Six5 sine oculis-related homeobox 5 acts_upstream_of_or_within IMP (MGI:1855730|PMID:10802668)
(MGI:1855731|PMID:10802667)
MGI PMID:10802667 PMID:10802668 MGI:1855730 MGI:1855731 NCBI chr 7:19,094,544...19,098,549
Ensembl chr 7:19,094,594...19,098,549
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IMP (MGI:5513052|PMID:23543054) MGI PMID:23543054 MGI:5513052 NCBI chr14:110,747,338...110,755,204
Ensembl chr14:110,748,580...110,755,149
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within IMP (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chr 2:152,293,826...152,313,994
Ensembl chr 2:152,293,828...152,313,996
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr10:56,014,293...56,228,968
Ensembl chr10:56,014,293...56,228,689
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (MGI:2151112|PMID:11641223) MGI PMID:11641223 MGI:2151112 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (MGI:2151112|PMID:11641223) MGI PMID:11641223 MGI:2151112 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1, in lens-CP94 acts_upstream_of_or_within
involved_in
IDA
IBA
(MGI:2673300|PMID:15037121)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15037121 PMID:21873635 MGI:2673300 MGI:6201960 NCBI chr 2:143,826,528...143,915,219
Ensembl chr 2:143,826,528...143,863,173
JBrowse link
G Bfsp2 beaded filament structural protein 2, phakinin acts_upstream_of_or_within IMP (MGI:2673300|PMID:15037121), (MGI:3717045|PMID:17065509) MGI PMID:15037121 PMID:17065509 MGI:2673300 MGI:3717045 NCBI chr 9:103,424,924...103,480,405
Ensembl chr 9:103,424,924...103,480,420
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within IMP (MGI:3776178|PMID:18172107) MGI PMID:18172107 MGI:3776178 NCBI chr 1:65,080,222...65,082,290
Ensembl chr 1:65,080,219...65,082,288
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IGI
IMP
(MGI:3796810|PMID:18455718)
(MGI:5447585|PMID:23136392)
MGI PMID:18455718 PMID:23136392 MGI:3796810 MGI:5447585 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within IGI (MGI:3796810|PMID:18455718) MGI PMID:18455718 MGI:3796810 NCBI chr 5:33,721,724...33,737,068
Ensembl chr 5:33,721,674...33,737,068
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IGI
IMP
(MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IMP (MGI:4888440|PMID:21118511) MGI PMID:21118511 MGI:4888440 NCBI chr 9:21,616,106...21,704,230
Ensembl chr 9:21,616,169...21,704,230
JBrowse link
G Tmod1 tropomodulin 1 involved_in IGI (MGI:5475090|PMID:23144950) CACAO PMID:23144950 MGI:5475090 NCBI chr 4:46,038,940...46,116,032
Ensembl chr 4:46,038,935...46,116,032
JBrowse link
G Vim vimentin acts_upstream_of_or_within IDA (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr 2:13,574,311...13,582,826
Ensembl chr 2:13,573,927...13,582,826
JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:3762268|PMID:17652744) MGI
RGD
PMID:8575616 PMID:17652744 GO_REF:0000096 MGI:3762268 MGI:4417868 RGD:1601018 NCBI chr 1:65,061,838...65,063,440
Ensembl chr 1:65,061,872...65,063,452
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within IMP (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr10:81,366,879...81,378,370
Ensembl chr10:81,366,222...81,378,516
JBrowse link
G Kdm5b lysine (K)-specific demethylase 5B ISO RGD PMID:24142921 RGD:9587771 NCBI chr 1:134,560,178...134,632,878
Ensembl chr 1:134,560,171...134,635,285
JBrowse link
G Maf avian musculoaponeurotic fibrosarcoma oncogene homolog acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:1340085|PMID:10383433)
(MGI:6201960|PMID:21873635)
(MGI:3760711|PMID:12835653)
MGI
GO_Central
PMID:10383433 PMID:12835653 PMID:21873635 MGI:1340085 MGI:3760711 MGI:6201960 NCBI chr 8:115,703,253...115,706,894
Ensembl chr 8:115,682,942...115,707,794
JBrowse link
G Nf2 neurofibromin 2 involved_in IMP (MGI:4457460|PMID:20181838) UniProt PMID:20181838 MGI:4457460 NCBI chr11:4,757,639...4,849,544
Ensembl chr11:4,765,845...4,849,536
JBrowse link
G Ntrk3 neurotrophic tyrosine kinase, receptor, type 3 acts_upstream_of_or_within IGI (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chr 7:78,179,986...78,581,034
Ensembl chr 7:78,175,959...78,738,012
JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 involved_in IMP (MGI:3831639|PMID:19007884) UniProt PMID:19007884 MGI:3831639 NCBI chr19:46,135,281...46,148,325
Ensembl chr19:46,135,685...46,148,326
JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 involved_in IMP (MGI:6710184|PMID:33854238) UniProt PMID:33854238 MGI:6710184 NCBI chr19:7,557,459...7,588,545
Ensembl chr19:7,557,459...7,588,545
JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IDA (MGI:2181466|PMID:12072567) UniProt PMID:12072567 MGI:2181466 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Skil SKI-like acts_upstream_of_or_within IDA (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr 3:31,095,058...31,122,923
Ensembl chr 3:31,095,058...31,122,577
JBrowse link
G Slc7a11 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 ISO RGD PMID:16043861 RGD:2315033 NCBI chr 3:50,364,936...50,499,087
Ensembl chr 3:49,892,526...50,443,614
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IMP (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4943339|PMID:21436445)
MGI
GO_Central
UniProt
PMID:21436445 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:4943339 MGI:6201960 NCBI chr 4:45,965,027...46,034,766
Ensembl chr 4:45,965,334...46,034,761
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in IMP (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chr 1:60,405,768...60,481,945
Ensembl chr 1:60,409,619...60,481,158
JBrowse link
G Atf4 activating transcription factor 4 involved_in IMP (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chr15:80,255,184...80,257,545
Ensembl chr15:80,255,184...80,257,541
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (MGI:3655912|PMID:16799046)
(MGI:3775669|PMID:18056999)
MGI PMID:16799046 PMID:18056999 MGI:3655912 MGI:3775669 NCBI chr17:31,677,931...31,681,730
Ensembl chr17:31,677,807...31,681,733
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within IMP (MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090) MGI PMID:8626090 PMID:12426373 MGI:3691890 MGI:81294 NCBI chr 1:65,080,222...65,082,290
Ensembl chr 1:65,080,219...65,082,288
JBrowse link
G Epha2 Eph receptor A2 involved_in IDA (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chr 4:141,301,221...141,329,384
Ensembl chr 4:141,301,240...141,329,384
JBrowse link
G Prox1 prospero homeobox 1 involved_in IMP (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within IMP (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chr 2:152,293,826...152,313,994
Ensembl chr 2:152,293,828...152,313,996
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (MGI:1316914|PMID:9851982) MGI PMID:9851982 MGI:1316914 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,739,815...103,791,894
Ensembl chr 3:103,739,815...103,791,563
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,687,512...38,876,331
Ensembl chr 6:38,694,390...38,876,165
JBrowse link
G Pou2f1 POU domain, class 2, transcription factor 1 acts_upstream_of_or_within IGI (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 1:165,865,150...166,002,749
Ensembl chr 1:165,865,154...166,002,678
JBrowse link
G Six3 sine oculis-related homeobox 3 acts_upstream_of_or_within IMP (MGI:3692850|PMID:17066077) MGI PMID:17066077 MGI:3692850 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of_or_within IGI (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 3:34,649,995...34,652,461
Ensembl chr 3:34,650,405...34,652,461
JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:1347707|PMID:10571739) MGI PMID:10571739 MGI:1347707 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 breast cancer anti-estrogen resistance 3 acts_upstream_of_or_within IMP (MGI:4358852|PMID:19365570) MGI PMID:19365570 MGI:4358852 NCBI chr 3:122,419,757...122,530,191
Ensembl chr 3:122,294,136...122,530,191
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr10:17,723,228...17,725,674
Ensembl chr10:17,723,218...17,725,674
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (MGI:82388|PMID:8812430)
(MGI:3655912|PMID:16799046)
MGI PMID:8812430 PMID:16799046 MGI:3655912 MGI:82388 NCBI chr17:31,677,931...31,681,730
Ensembl chr17:31,677,807...31,681,733
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:3603687|PMID:16102745) MGI PMID:16102745 MGI:3603687 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within IMP (MGI:1933072|PMID:11290300) MGI PMID:11290300 MGI:1933072 NCBI chr 5:33,721,724...33,737,068
Ensembl chr 5:33,721,674...33,737,068
JBrowse link
G Lctl lactase-like involved_in IMP (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chr 9:64,117,123...64,138,118
Ensembl chr 9:64,117,147...64,138,118
JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within IMP (MGI:3028436|PMID:14713950) MGI PMID:14713950 MGI:3028436 NCBI chr11:18,880,428...19,019,651
Ensembl chr11:18,879,817...19,018,985
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 9:43,737,075...43,807,461
Ensembl chr 9:43,743,984...43,832,658
Ensembl chr 9:43,743,984...43,832,658
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within IMP (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr16:46,387,665...46,498,535
Ensembl chr16:46,387,706...46,498,525
JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 involved_in IMP (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chr19:46,135,281...46,148,325
Ensembl chr19:46,135,685...46,148,326
JBrowse link
G Prox1 prospero homeobox 1 involved_in IMP (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chr  X:152,609,509...152,770,788
Ensembl chr  X:152,609,509...152,769,465
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 acts_upstream_of_or_within IMP (MGI:1201714|PMID:9512512) MGI PMID:9512512 MGI:1201714 NCBI chr 8:12,395,519...12,399,555
Ensembl chr 8:12,395,295...12,400,126
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IMP
IBA
ISO
(MGI:4943339|PMID:21436445)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:21436445 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:4943339 MGI:6201960 NCBI chr 4:45,965,027...46,034,766
Ensembl chr 4:45,965,334...46,034,761
JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:1329246|PMID:9918694), (MGI:3774683|PMID:18224708) MGI PMID:9918694 PMID:18224708 MGI:1329246 MGI:3774683 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within IEP (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 4:148,804,366...148,954,893
Ensembl chr 4:148,804,429...148,954,889
JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 involved_in IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 8:78,433,009...78,436,647
Ensembl chr 8:78,433,010...78,436,645
JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (MGI:1352262|PMID:10652278), (MGI:1861492|PMID:10890982), (MGI:3603877|PMID:16199865) UniProt PMID:10652278 PMID:10890982 PMID:16199865 MGI:1352262 MGI:1861492 MGI:3603877 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Spred1 sprouty protein with EVH-1 domain 1, related sequence involved_in IDA (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr 2:117,121,071...117,182,279
Ensembl chr 2:117,121,374...117,182,279
JBrowse link
G Spred2 sprouty-related EVH1 domain containing 2 involved_in IDA (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr11:19,924,442...20,024,026
Ensembl chr11:19,924,375...20,024,026
JBrowse link
G Spred3 sprouty-related EVH1 domain containing 3 involved_in IDA (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr 7:29,157,783...29,170,070
Ensembl chr 7:29,158,829...29,170,411
JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in IDA (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr 3:37,639,947...37,644,599
Ensembl chr 3:37,639,947...37,644,598
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in IDA (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr14:105,891,947...105,896,819
Ensembl chr14:105,891,947...105,896,819
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:1336407|PMID:10321489) MGI PMID:10321489 MGI:1336407 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within IMP (MGI:3054140|PMID:15363390) MGI PMID:15363390 MGI:3054140 NCBI chr 2:180,774,381...180,776,900
Ensembl chr 2:180,774,381...180,776,900
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 4:148,804,366...148,954,893
Ensembl chr 4:148,804,429...148,954,889
JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin-like 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:148,495,181...148,500,462
Ensembl chr 4:148,495,183...148,500,460
JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 3:32,708,546...32,726,973
Ensembl chr 3:32,706,298...32,726,973
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within ISO
IMP
(MGI:5288596|PMID:21441919) MGI PMID:21441919 GO_REF:0000008 MGI:2154458 MGI:5288596 NCBI chr10:63,099,785...63,101,280
Ensembl chr10:63,099,651...63,101,279
JBrowse link
G Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chr10:98,914,630...99,026,143
Ensembl chr10:98,914,406...99,026,143
JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 6:113,743,831...114,042,613
Ensembl chr 6:113,743,831...114,042,613
JBrowse link
G Atp2b3 ATPase, Ca++ transporting, plasma membrane 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chr  X:73,502,749...73,573,275
Ensembl chr  X:73,503,086...73,571,005
JBrowse link
G Atp2b4 ATPase, Ca++ transporting, plasma membrane 4 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 1:133,702,674...133,801,059
Ensembl chr 1:133,699,457...133,801,041
JBrowse link
G Bsg basigin involved_in IMP (MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760) UniProt PMID:10967074 PMID:11273674 PMID:11853760 MGI:1888850 MGI:1932603 MGI:3610672 NCBI chr10:79,704,358...79,711,979
Ensembl chr10:79,704,491...79,711,969
JBrowse link
G Casp2 caspase 2 ISO RGD PMID:9809666 RGD:4107085 NCBI chr 6:42,264,902...42,282,508
Ensembl chr 6:42,264,985...42,282,508
JBrowse link
G Gpm6a glycoprotein m6a involved_in IDA (MGI:3811956|PMID:18776950) UniProt PMID:18776950 MGI:3811956 NCBI chr 8:54,779,434...55,060,878
Ensembl chr 8:54,954,843...55,060,871
JBrowse link
G Optn optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chr 2:5,020,521...5,064,399
Ensembl chr 2:5,020,642...5,064,051
JBrowse link
G Psen1 presenilin 1 ISO RGD PMID:12401445 RGD:729595 NCBI chr12:83,688,152...83,735,095
Ensembl chr12:83,688,152...83,735,199
JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 (class II) acts_upstream_of_or_within IMP (MGI:3694624|PMID:17089410) MGI PMID:17089410 MGI:3694624 NCBI chr11:79,591,021...79,698,016
Ensembl chr11:79,591,212...79,698,023
JBrowse link
G Rpe65 retinal pigment epithelium 65 involved_in ISO RGD
MGI
PMID:2631392 GO_REF:0000096 MGI:4417868 RGD:9585660 NCBI chr 3:159,599,075...159,625,307
Ensembl chr 3:159,599,175...159,625,321
JBrowse link
G Slc17a6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chr 7:51,621,830...51,671,126
Ensembl chr 7:51,622,006...51,671,119
JBrowse link
G Slc17a7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chr 7:45,163,921...45,176,139
Ensembl chr 7:45,163,949...45,176,142
JBrowse link
G Slc17a8 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 ISO RGD PMID:18482716 RGD:9999162 NCBI chr10:89,574,020...89,621,249
Ensembl chr10:89,574,020...89,621,253
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 9:21,616,106...21,704,230
Ensembl chr 9:21,616,169...21,704,230
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in
acts_upstream_of_or_within
ISO
IEP
(PMID:18816825) BHF-UCL
BHF-UCL
PMID:18816825 NCBI chr 5:24,592,622...24,624,456
Ensembl chr 5:24,590,818...24,624,411
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT rich interactive domain 1A (SWI-like) acts_upstream_of_or_within IMP (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 4:133,679,008...133,756,769
Ensembl chr 4:133,679,008...133,756,769
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IGI (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr19:20,492,583...20,643,463
Ensembl chr19:20,492,715...20,643,465
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within IGI (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 7:66,390,892...66,427,477
Ensembl chr 7:66,390,890...66,427,517
JBrowse link
G Pax2 paired box 2 involved_in IMP (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr19:44,746,601...44,838,269
Ensembl chr19:44,756,045...44,837,871
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2, alpha involved_in IMP (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 sine oculis-related homeobox 3 involved_in IDA (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in IMP (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 2:71,528,113...71,533,981
Ensembl chr 2:71,528,113...71,533,981
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IMP (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 2:71,543,408...71,546,754
Ensembl chr 2:71,543,408...71,546,754
JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
IMP
ISO
(MGI:5635365|PMID:22527307)
(MGI:1352262|PMID:10652278), (MGI:3603877|PMID:16199865)
UniProt
MGI
PMID:10652278 PMID:16199865 PMID:22527307 GO_REF:0000096 MGI:1352262 MGI:3603877 MGI:4834177 MGI:5635365 NCBI chr 4:114,924,443...114,926,067
Ensembl chr 4:114,925,147...114,926,013
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:37,348,477...37,410,106
Ensembl chr 3:37,348,346...37,410,108
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in IMP (MGI:3604916|PMID:16162653) UniProt PMID:16162653 MGI:3604916 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 involved_in ISO RGD
MGI
PMID:12917395 GO_REF:0000096 MGI:4417868 RGD:2301324 NCBI chr 3:129,901,415...129,914,112
Ensembl chr 3:129,901,425...129,914,103
JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (MGI:2662810|PMID:12717433) MGI PMID:12717433 MGI:2662810 NCBI chr12:107,910,403...108,004,145
Ensembl chr12:107,910,403...108,003,602
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within
involved_in
IMP (MGI:3821812|PMID:18791178)
(MGI:3826935|PMID:18832390)
MGI
CACAO
PMID:18791178 PMID:18832390 MGI:3821812 MGI:3826935 NCBI chr 1:64,730,558...64,737,750
Ensembl chr 1:64,730,558...64,737,751
JBrowse link
G Klf4 Kruppel-like factor 4 (gut) acts_upstream_of_or_within IMP (MGI:3697243|PMID:17060454) MGI PMID:17060454 MGI:3697243 NCBI chr 4:55,527,137...55,532,475
Ensembl chr 4:55,527,143...55,532,466
JBrowse link
G Krtap21-1 keratin associated protein 21-1 acts_upstream_of_or_within IMP (MGI:3695523|PMID:17151017) MGI PMID:17151017 MGI:3695523 NCBI chr16:89,403,027...89,403,774
Ensembl chr16:89,403,218...89,403,868
JBrowse link
G Muc4 mucin 4 ISO RGD PMID:11120573 RGD:2303744 NCBI chr16:32,735,886...32,782,391
Ensembl chr16:32,735,886...32,782,391
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (MGI:1339868|PMID:10229225) MGI PMID:10229225 MGI:1339868 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within IGI (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr17:27,019,812...27,028,627
Ensembl chr17:27,019,810...27,029,009
JBrowse link
G Bax BCL2-associated X protein acts_upstream_of_or_within IGI (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr 7:45,461,695...45,466,903
Ensembl chr 7:45,461,697...45,466,898
JBrowse link
G Flt1 FMS-like tyrosine kinase 1 acts_upstream_of_or_within IGI (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr 5:147,561,604...147,726,438
Ensembl chr 5:147,561,604...147,726,011
JBrowse link
G Hmgn1 high mobility group nucleosomal binding domain 1 acts_upstream_of_or_within IMP (MGI:3614611|PMID:16466397) MGI PMID:16466397 MGI:3614611 NCBI chr16:96,121,588...96,127,725
Ensembl chr16:96,120,618...96,127,729
JBrowse link
G Kdr kinase insert domain protein receptor acts_upstream_of_or_within IGI (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr 5:75,932,827...75,979,072
Ensembl chr 5:75,932,827...75,978,458
JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within IDA (MGI:5516374|PMID:24101522) MGI PMID:24101522 MGI:5516374 NCBI chr 8:84,208,518...84,208,592
Ensembl chr 8:84,208,518...84,208,592
JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within IMP (MGI:3054140|PMID:15363390) MGI PMID:15363390 MGI:3054140 NCBI chr 2:180,774,381...180,776,900
Ensembl chr 2:180,774,381...180,776,900
JBrowse link
G Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr11:28,853,154...28,926,743
Ensembl chr11:28,853,204...28,926,743
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 2:125,300,594...125,506,485
Ensembl chr 2:125,300,594...125,507,993
JBrowse link
G Mfap2 microfibrillar-associated protein 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 4:141,010,424...141,015,976
Ensembl chr 4:141,010,418...141,015,984
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 acts_upstream_of_or_within IMP (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr14:27,481,090...27,508,510
Ensembl chr14:27,481,090...27,508,460
JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated involved_in
acts_upstream_of_or_within
IMP (MGI:2675211|PMID:12915475)
(MGI:3051713|PMID:15316081), (MGI:3690408|PMID:16885194)
MGI PMID:12915475 PMID:15316081 PMID:16885194 MGI:2675211 MGI:3051713 MGI:3690408 NCBI chr 1:139,176,649...139,379,316
Ensembl chr 1:139,197,056...139,377,100
JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within IMP (MGI:3768917|PMID:18216855) MGI PMID:18216855 MGI:3768917 NCBI chr16:96,587,452...97,171,113
Ensembl chr16:96,590,840...97,170,752
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within IMP (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr 8:13,405,081...13,421,951
Ensembl chr 8:13,405,081...13,421,951
JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within IGI (MGI:1309707|PMID:9784491) MGI PMID:9784491 MGI:1309707 NCBI chr 6:134,920,401...134,925,525
Ensembl chr 6:134,920,401...134,925,513
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C (P57) acts_upstream_of_or_within IGI (MGI:1309707|PMID:9784491) MGI PMID:9784491 MGI:1309707 NCBI chr 7:143,458,339...143,461,059
Ensembl chr 7:143,458,339...143,461,050
JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in IMP (MGI:5314555|PMID:22323600) UniProt PMID:22323600 MGI:5314555 NCBI chr 2:119,325,784...119,335,666
Ensembl chr 2:119,325,784...119,335,962
JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in IMP (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr 2:19,445,663...19,447,501
Ensembl chr 2:19,445,663...19,447,501
JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IMP (MGI:4837018|PMID:20890044) UniProt PMID:20890044 MGI:4837018 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within IEP (MGI:5523751|PMID:23932931) MGI PMID:23932931 MGI:5523751 NCBI chr18:25,477,620...25,754,520
Ensembl chr18:25,477,632...25,754,157
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor acts_upstream_of_or_within IDA (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr 2:109,674,700...109,727,043
Ensembl chr 2:109,674,700...109,727,007
JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of_or_within IDA (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr19:12,763,528...12,765,632
Ensembl chr19:12,763,660...12,765,632
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within IDA (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr 3:37,348,477...37,410,106
Ensembl chr 3:37,348,346...37,410,108
JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase acts_upstream_of_or_within IMP (MGI:3603700|PMID:15579149) MGI PMID:15579149 MGI:3603700 NCBI chr 5:137,288,247...137,294,466
Ensembl chr 5:137,287,519...137,294,466
JBrowse link
G Actb actin, beta ISO RGD PMID:22916200 RGD:9587758 NCBI chr 5:142,903,115...142,907,976
Ensembl chr 5:142,903,115...142,906,754
JBrowse link
G Agtpbp1 ATP/GTP binding protein 1 acts_upstream_of_or_within IMP (MGI:5754679|PMID:24791901)
(MGI:4849309|PMID:21052544)
MGI PMID:21052544 PMID:24791901 MGI:4849309 MGI:5754679 NCBI chr13:59,449,534...59,557,370
Ensembl chr13:59,445,742...59,585,227
JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within IMP (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (MGI:3699582|PMID:10982921) MGI PMID:10982921 MGI:3699582 NCBI chr18:34,220,297...34,322,190
Ensembl chr18:34,220,924...34,322,552
JBrowse link
G Bax BCL2-associated X protein acts_upstream_of_or_within IMP (MGI:1277631|PMID:9699561) MGI PMID:9699561 MGI:1277631 NCBI chr 7:45,461,695...45,466,903
Ensembl chr 7:45,461,697...45,466,898
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IMP (MGI:2654391|PMID:12654290) MGI PMID:12654290 MGI:2654391 NCBI chr 3:141,837,135...142,169,585
Ensembl chr 3:141,837,136...142,169,425
JBrowse link
G Bmpr2 bone morphogenetic protein receptor, type II (serine/threonine kinase) ISO RGD PMID:10482474 RGD:5129487 NCBI chr 1:59,764,279...59,878,081
Ensembl chr 1:59,763,400...59,879,014
JBrowse link
G C3 complement component 3 acts_upstream_of_or_within IGI (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chr17:57,203,967...57,228,136
Ensembl chr17:57,203,970...57,228,136
JBrowse link
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr  X:7,607,103...7,635,196
Ensembl chr  X:7,607,083...7,635,196
JBrowse link
G Calb1 calbindin 1 acts_upstream_of_or_within IEP (PMID:10741426) UniProt PMID:10741426 NCBI chr 4:15,881,264...15,906,709
Ensembl chr 4:15,881,264...15,908,064
JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840
JBrowse link
G Cfd complement factor D (adipsin) acts_upstream_of_or_within IGI (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chr10:79,890,853...79,892,655
Ensembl chr10:79,890,853...79,892,655
JBrowse link
G Cfh complement component factor h acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IMP
IGI
(MGI:3760334|PMID:17921253), (MGI:5883383|PMID:28057640)
(MGI:5883383|PMID:28057640)
(MGI:6304909|PMID:30705315)
MGI PMID:17921253 PMID:28057640 PMID:30705315 MGI:3760334 MGI:5883383 MGI:6304909 NCBI chr 1:140,085,855...140,183,411
Ensembl chr 1:140,084,708...140,183,764
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:8,690,402...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Clcn2 chloride channel, voltage-sensitive 2 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr16:20,702,435...20,717,746
Ensembl chr16:20,702,964...20,717,746
JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within IMP (MGI:3695117|PMID:15565184)
(MGI:4849309|PMID:21052544)
MGI PMID:15565184 PMID:21052544 MGI:3695117 MGI:4849309 NCBI chr 8:14,881,335...14,901,720
Ensembl chr 8:14,881,335...14,901,720
JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (MGI:5315300|PMID:22447858), (MGI:5608935|PMID:25147295) MGI PMID:22447858 PMID:25147295 MGI:5315300 MGI:5608935 NCBI chr 1:139,176,649...139,379,316
Ensembl chr 1:139,197,056...139,377,100
JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 7:15,865,947...15,879,955
Ensembl chr 7:15,865,947...15,879,968
JBrowse link
G Dcx doublecortin involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr  X:143,855,842...143,933,396
Ensembl chr  X:143,855,842...143,933,311
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chr 7:141,291,974...141,296,464
Ensembl chr 7:141,292,006...141,296,464
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO RGD PMID:23954924 RGD:11251759 NCBI chr13:44,922,079...45,002,096
Ensembl chr13:44,922,075...45,002,147
JBrowse link
G Gdnf glial cell line derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chr15:7,810,048...7,837,580
Ensembl chr15:7,810,846...7,837,575
JBrowse link
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 9:107,674,437...107,679,634
Ensembl chr 9:107,674,474...107,679,712
JBrowse link
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 4:155,491,300...155,559,269
Ensembl chr 4:155,491,361...155,559,269
JBrowse link
G Grm6 glutamate receptor, metabotropic 6 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr11:50,850,369...50,866,208
Ensembl chr11:50,850,685...50,866,208
JBrowse link
G Grn granulin acts_upstream_of_or_within IMP (MGI:6101836|PMID:28728022) MGI PMID:28728022 MGI:6101836 NCBI chr11:102,430,507...102,436,809
Ensembl chr11:102,430,315...102,437,048
JBrowse link
G Hpca hippocalcin ISO RGD PMID:7789406 RGD:9686441 NCBI chr 4:129,111,570...129,125,919
Ensembl chr 4:129,111,570...129,122,036
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr19:42,755,190...42,780,015
Ensembl chr19:42,755,105...42,779,978
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (MGI:3831471|PMID:18940586) MGI PMID:18940586 MGI:3831471 NCBI chr11:11,684,962...11,772,930
Ensembl chr11:11,685,003...11,772,926
JBrowse link
G Il4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chr11:53,612,460...53,618,665
Ensembl chr11:53,602,982...53,618,669
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 6:29,200,436...29,216,364
Ensembl chr 6:29,200,434...29,216,364
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 9:108,560,436...108,565,577
Ensembl chr 9:108,560,286...108,565,584
JBrowse link
G Jmjd6 jumonji domain containing 6 acts_upstream_of_or_within IMP (MGI:3580691|PMID:15345036) MGI PMID:15345036 MGI:3580691 NCBI chr11:116,837,432...116,843,767
Ensembl chr11:116,837,432...116,843,449
JBrowse link
G Lama1 laminin, alpha 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr17:67,697,127...67,822,645
Ensembl chr17:67,697,259...67,822,647
JBrowse link
G Lamb2 laminin, beta 2 acts_upstream_of_or_within IGI (MGI:4454394|PMID:19907020) MGI PMID:19907020 MGI:4454394 NCBI chr 9:108,479,847...108,490,530
Ensembl chr 9:108,479,736...108,490,530
JBrowse link
G Lamc3 laminin gamma 3 acts_upstream_of_or_within IGI (MGI:4454394|PMID:19907020) MGI PMID:19907020 MGI:4454394 NCBI chr 2:31,887,281...31,949,083
Ensembl chr 2:31,887,291...31,946,539
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IEP (PMID:10741426) UniProt PMID:10741426 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Lhx2 LIM homeobox protein 2 acts_upstream_of_or_within IGI (MGI:3836385|PMID:19146846) MGI PMID:19146846 MGI:3836385 NCBI chr 2:38,339,271...38,369,737
Ensembl chr 2:38,339,281...38,369,733
JBrowse link
G Lif leukemia inhibitory factor involved_in ISO RGD
MGI
PMID:16643897 GO_REF:0000096 MGI:4417868 RGD:2326157 NCBI chr11:4,257,568...4,272,514
Ensembl chr11:4,257,557...4,272,514
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr13:73,467,231...73,516,420
Ensembl chr13:73,467,197...73,516,422
JBrowse link
G Max Max protein ISO RGD PMID:14603520 RGD:2316820 NCBI chr12:76,937,269...76,962,323
Ensembl chr12:76,937,269...76,962,201
JBrowse link
G Mdm1 transformed mouse 3T3 cell double minute 1 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:4849309|PMID:21052544)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21052544 PMID:21873635 MGI:4849309 MGI:6201960 NCBI chr10:118,141,540...118,168,999
Ensembl chr10:118,141,811...118,168,997
JBrowse link
G Mertk MER proto-oncogene tyrosine kinase acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 2:128,698,915...128,803,162
Ensembl chr 2:128,698,956...128,802,894
JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 9:44,101,770...44,109,187
Ensembl chr 9:44,101,729...44,109,187
JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within IGI (MGI:5469752|PMID:23341629)
(MGI:6108693|PMID:28819115)
MGI PMID:23341629 PMID:28819115 MGI:5469752 MGI:6108693 NCBI chr 6:30,165,918...30,165,992
Ensembl chr 6:30,165,918...30,165,992
JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within IGI (MGI:5469752|PMID:23341629)
(MGI:6108693|PMID:28819115)
MGI PMID:23341629 PMID:28819115 MGI:5469752 MGI:6108693 NCBI chr 6:30,169,668...30,169,737
Ensembl chr 6:30,169,668...30,169,737
JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within IGI (MGI:6108693|PMID:28819115)
(MGI:5469752|PMID:23341629)
MGI PMID:23341629 PMID:28819115 MGI:5469752 MGI:6108693 NCBI chr 6:30,169,446...30,169,551
Ensembl chr 6:30,169,446...30,169,551
JBrowse link
G Musk muscle, skeletal, receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chr 4:58,285,729...58,377,848
Ensembl chr 4:58,285,960...58,374,303
JBrowse link
G Myh10 myosin, heavy polypeptide 10, non-muscle acts_upstream_of_or_within IMP (MGI:1099556|PMID:9356462), (MGI:1933038|PMID:11283949) MGI PMID:9356462 PMID:11283949 MGI:1099556 MGI:1933038 NCBI chr11:68,691,915...68,816,626
Ensembl chr11:68,691,559...68,816,632
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 9:43,737,075...43,807,461
Ensembl chr 9:43,743,984...43,832,658
Ensembl chr 9:43,743,984...43,832,658
JBrowse link
G Neurod4 neurogenic differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chr10:130,268,152...130,280,254
Ensembl chr10:130,268,152...130,280,240
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell ISO RGD PMID:16639026 RGD:7771562 NCBI chr 5:24,364,816...24,384,474
Ensembl chr 5:24,364,810...24,384,474
JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) involved_in IMP (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 2:127,740,732...127,788,913
Ensembl chr 2:127,740,732...127,788,897
JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 4:152,476,706...152,563,184
Ensembl chr 4:152,476,706...152,563,183
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IMP (MGI:2151063|PMID:11997145)
(MGI:3624573|PMID:16702404)
MGI PMID:11997145 PMID:16702404 MGI:2151063 MGI:3624573 NCBI chr10:42,561,963...42,583,590
Ensembl chr10:42,561,963...42,583,632
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IMP (MGI:3624051|PMID:12407160)
(MGI:4849309|PMID:21052544)
MGI PMID:12407160 PMID:21052544 MGI:3624051 MGI:4849309 NCBI chr 9:59,942,771...59,960,834
Ensembl chr 9:59,942,771...59,960,659
JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 ISO RGD PMID:22714110 RGD:124713571 NCBI chr 2:57,106,830...57,124,003
Ensembl chr 2:57,106,830...57,124,003
JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 acts_upstream_of_or_within IMP (MGI:5619875|PMID:25542970) MGI PMID:25542970 MGI:5619875 NCBI chr13:58,806,472...59,133,970
Ensembl chr13:58,806,569...59,133,970
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chr16:29,579,281...29,663,127
Ensembl chr16:29,579,334...29,654,884
JBrowse link
G Pax4 paired box 4 ISO RGD PMID:19012751 RGD:2311636 NCBI chr 6:28,442,334...28,449,340
Ensembl chr 6:28,442,334...28,449,353
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI
ISO
(MGI:3836385|PMID:19146846) MGI
RGD
PMID:19012751 PMID:19146846 MGI:3836385 RGD:2311636 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4849309|PMID:21052544)
GO_Central
MGI
PMID:21052544 PMID:21873635 MGI:4849309 MGI:6201960 NCBI chr18:61,220,474...61,289,750
Ensembl chr18:61,220,315...61,289,924
JBrowse link
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4849309|PMID:21052544)
GO_Central
MGI
PMID:21052544 PMID:21873635 MGI:4849309 MGI:6201960 NCBI chr 5:108,388,373...108,431,743
Ensembl chr 5:108,388,391...108,432,397
JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr15:79,995,865...80,024,614
Ensembl chr15:79,995,874...80,014,977
JBrowse link
G Pfdn5 prefoldin 5 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr15:102,326,116...102,331,490
Ensembl chr15:102,326,116...102,331,873
JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 acts_upstream_of_or_within IMP (MGI:80981|PMID:8637595)
(MGI:3621691|PMID:9630743)
MGI PMID:8637595 PMID:9630743 MGI:3621691 MGI:80981 NCBI chr 8:78,433,009...78,436,647
Ensembl chr 8:78,433,010...78,436,645
JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within IMP
IGI
(MGI:4849309|PMID:21052544)
(MGI:5905515|PMID:28053051)
(MGI:3610839|PMID:15964665)
MGI PMID:15964665 PMID:21052544 PMID:28053051 MGI:3610839 MGI:4849309 MGI:5905515 NCBI chr17:46,910,478...46,924,933
Ensembl chr17:46,910,459...46,924,933
JBrowse link
G Ptn pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chr 6:36,714,924...36,810,179
Ensembl chr 6:36,714,929...36,810,220
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within IGI (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chr14:16,430,839...17,082,331
Ensembl chr14:16,430,839...16,819,156
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chr15:102,234,938...102,257,522
Ensembl chr15:102,234,938...102,257,517
JBrowse link
G Rbp4 retinol binding protein 4, plasma acts_upstream_of_or_within IMP (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr19:38,116,620...38,125,321
Ensembl chr19:38,116,629...38,125,281
JBrowse link
G Rd3 retinal degeneration 3 involved_in
acts_upstream_of_or_within
IMP
IBA
(MGI:52860|PMID:8486383)
(MGI:4849309|PMID:21052544)
(MGI:6201960|PMID:21873635)
UniProt
MGI
GO_Central
PMID:8486383 PMID:21052544 PMID:21873635 MGI:4849309 MGI:52860 MGI:6201960 NCBI chr 1:191,956,490...191,988,282
Ensembl chr 1:191,977,370...191,988,283
JBrowse link
G Ret ret proto-oncogene ISO RGD PMID:16650834 RGD:2324945 NCBI chr 6:118,151,748...118,197,744
Ensembl chr 6:118,151,745...118,197,718
JBrowse link
G Rho rhodopsin acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 6:115,926,754...115,940,038
Ensembl chr 6:115,931,748...115,940,036
JBrowse link
G Rnpep arginyl aminopeptidase (aminopeptidase B) ISO RGD PMID:15500823 RGD:2325937 NCBI chr 1:135,262,699...135,284,423
Ensembl chr 1:135,262,712...135,284,084
JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IGI
IMP
(MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chr19:8,927,382...8,929,356
Ensembl chr19:8,927,391...8,929,356
JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chr19:18,930,609...19,111,196
Ensembl chr19:18,930,605...19,111,196
JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4849309|PMID:21052544)
GO_Central
MGI
PMID:21052544 PMID:21873635 MGI:4849309 MGI:6201960 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241
JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:63,992,431...64,033,506
Ensembl chr14:63,992,506...64,035,025
JBrowse link
G Rpe65 retinal pigment epithelium 65 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 3:159,599,075...159,625,307
Ensembl chr 3:159,599,175...159,625,321
JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr14:52,104,241...52,161,339
Ensembl chr14:52,110,704...52,163,546
JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within IMP (MGI:1097191|PMID:9331275), (MGI:1332363|PMID:10049578) MGI PMID:9331275 PMID:10049578 MGI:1097191 MGI:1332363 NCBI chr16:55,966,275...55,971,437
Ensembl chr16:55,966,275...55,971,435
JBrowse link
G Rrm1 ribonucleotide reductase M1 ISO RGD PMID:2647502 RGD:5133699 NCBI chr 7:102,441,695...102,469,771
Ensembl chr 7:102,441,695...102,469,771
JBrowse link
G Scaper S phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (MGI:6148507|PMID:28794130) MGI PMID:28794130 MGI:6148507 NCBI chr 9:55,549,879...55,938,221
Ensembl chr 9:55,549,879...55,938,119
JBrowse link
G Serpinf1 serine (or cysteine) peptidase inhibitor, clade F, member 1 ISO RGD PMID:21738387 RGD:8655555 NCBI chr11:75,410,029...75,422,623
Ensembl chr11:75,409,769...75,422,701
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Slc1a1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 involved_in IMP (MGI:6492417|PMID:28703795) MGI PMID:28703795 MGI:6492417 NCBI chr19:28,835,135...28,913,960
Ensembl chr19:28,835,049...28,913,960
JBrowse link
G Slc4a5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 acts_upstream_of_or_within IMP (MGI:5292606|PMID:21705333) MGI PMID:21705333 MGI:5292606 NCBI chr 6:83,207,580...83,304,945
Ensembl chr 6:83,219,828...83,304,945
JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of_or_within IGI (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:25,565,893...25,570,686
Ensembl chr17:25,565,892...25,570,686
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr10:56,014,293...56,228,968
Ensembl chr10:56,014,293...56,228,689
JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (MGI:4819740|PMID:20711468) MGI PMID:20711468 MGI:4819740 NCBI chr19:3,896,050...3,907,133
Ensembl chr19:3,896,050...3,907,133
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr13:93,145,855...93,192,435
Ensembl chr13:93,146,282...93,192,385
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IDA (MGI:3826282|PMID:18973577) MGI PMID:18973577 MGI:3826282 NCBI chr17:70,844,205...70,853,532
Ensembl chr17:70,844,205...70,853,546
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within IDA (MGI:3826300|PMID:18926818) MGI PMID:18926818 MGI:3826300 NCBI chr 2:156,839,817...156,855,570
Ensembl chr 2:156,840,007...156,855,570
JBrowse link
G Ttll5 tubulin tyrosine ligase-like family, member 5 acts_upstream_of_or_within ISO (MGI:5754679|PMID:24791901) MGI PMID:24791901 MGI:5754679 NCBI chr12:85,824,693...86,053,760
Ensembl chr12:85,824,659...86,061,893
JBrowse link
G Tub tubby bipartite transcription factor acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 7:109,010,880...109,034,459
Ensembl chr 7:108,950,338...109,034,460
JBrowse link
G Tulp1 tubby like protein 1 acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr17:28,351,515...28,365,216
Ensembl chr17:28,351,515...28,365,222
JBrowse link
G Uchl3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) acts_upstream_of_or_within IMP (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr14:101,653,892...101,696,125
Ensembl chr14:101,653,967...101,696,125
JBrowse link
G Ush2a usherin ISO RGD PMID:12160733 RGD:634438 NCBI chr 1:188,262,838...188,965,497
Ensembl chr 1:188,262,023...188,965,041
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IDA (MGI:1349226|PMID:10595508) MGI PMID:10595508 MGI:1349226 NCBI chr 6:83,711,239...83,738,313
Ensembl chr 6:83,711,264...83,738,313
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr 2:147,012,755...147,078,000
Ensembl chr 2:147,012,996...147,078,000
JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:31,198,981...31,202,663
Ensembl chr 5:31,198,981...31,202,303
JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IGI (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
G Arl6 ADP-ribosylation factor-like 6 acts_upstream_of_or_within IMP (MGI:4442100|PMID:20333246)
(MGI:5306530|PMID:22139371)
MGI PMID:20333246 PMID:22139371 MGI:4442100 MGI:5306530 NCBI chr16:59,612,949...59,639,409
Ensembl chr16:59,612,949...59,639,391
JBrowse link
G Atp8a2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 involved_in IMP (MGI:5574432|PMID:24413176) UniProt PMID:24413176 MGI:5574432 NCBI chr14:59,647,531...60,086,914
Ensembl chr14:59,638,540...60,197,179