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ONTOLOGY REPORT - ANNOTATIONS


Term:osteoblast differentiation
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Accession:GO:0001649 term browser browse the term
Definition:The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
Synonyms:exact_synonym: osteoblast cell differentiation


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osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 NOT ISO (MGI:MGI:5291888|PMID:21784188) RGD PMID:21784188 MGI:MGI:5291888 NCBI chr 1:220,120,532...220,136,460
Ensembl chr 1:220,120,533...220,136,470
JBrowse link
G Adar adenosine deaminase, RNA-specific ISO
IEA
MGI:MGI:2182767|MGI:MGI:3032439 (MGI:MGI:5464240|PMID:23123729)
GO_REF:0000107
RGD
Ensembl
PMID:23123729 GO_REF:0000107, MGI:MGI:5464240 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO MGI:MGI:88177|MGI:MGI:96440 (MGI:MGI:3837587|PMID:19208758) RGD PMID:19208758 MGI:MGI:3837587 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO MGI:MGI:1097686|MGI:MGI:1101768 (MGI:MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:MGI:5430686 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Bglap bone gamma-carboxyglutamate protein TAS
IBA
ISO
IEP
PMID:21873635
(PMID:17023519)
RGD PMID:17023519, PMID:15456860, PMID:21873635, PMID:20022632 RGD:1578394, RGD:13792537, RGD:2316140 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Bmp2 bone morphogenetic protein 2 IEA
ISO
GO_REF:0000107
MGI:MGI:101948|MGI:MGI:1922667|MGI:MGI:87986|MGI:MGI:88182|MGI:MGI:96440|MGI:MGI:99829 (MGI:MGI:3528208|PMID:15565649), (MGI:MGI:3607617|PMID:16109715), (MGI:MGI:3837587|PMID:19208758), (MGI:MGI:3850932|PMID:19213727)
(PMID:15150273), (PMID:22705305)
Ensembl
RGD
PMID:15150273, PMID:15565649, PMID:16109715, PMID:19208758, PMID:19213727, PMID:22705305 GO_REF:0000107, MGI:MGI:3528208, MGI:MGI:3607617, MGI:MGI:3837587, MGI:MGI:3850932 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp3 bone morphogenetic protein 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:12,362,912...12,387,572
Ensembl chr14:12,359,363...12,387,102
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO
ISS
IEA
(PMID:17720811)
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:3525426|PMID:15381701)
RGD
UniProt
Ensembl
PMID:15381701, PMID:17720811 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3525426 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp6 bone morphogenetic protein 6 IEP
ISO
MGI:MGI:88177 (MGI:MGI:3607617|PMID:16109715) RGD PMID:16109715, PMID:11995934 MGI:MGI:3607617, RGD:2289023 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Bmp8a bone morphogenetic protein 8a ISO (MGI:MGI:5487540|PMID:12925636) RGD PMID:12925636 MGI:MGI:5487540 NCBI chr 5:141,007,462...141,033,511
Ensembl chr 5:141,007,462...141,033,511
JBrowse link
G Cbfb core-binding factor subunit beta ISO MGI:MGI:2447293 (MGI:MGI:2446761|PMID:12434156) RGD PMID:12434156 MGI:MGI:2446761 NCBI chr19:37,127,508...37,171,075
Ensembl chr19:37,127,508...37,171,069
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO
ISS
(PMID:21403648)
GO_REF:0000024
RGD
UniProt
PMID:21403648 GO_REF:0000024 NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
JBrowse link
G Ccn1 cellular communication network factor 1 ISO
IEA
MGI:MGI:98956 (MGI:MGI:3620470|PMID:16581771)
GO_REF:0000107
RGD
Ensembl
PMID:16581771 GO_REF:0000107, MGI:MGI:3620470 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Ccn4 cellular communication network factor 4 IEA
ISO
GO_REF:0000107
(MGI:MGI:6294593|PMID:15331410)
Ensembl
RGD
PMID:15331410 GO_REF:0000107, MGI:MGI:6294593 NCBI chr 7:107,695,227...107,723,759
Ensembl chr 7:107,695,215...107,723,772
JBrowse link
G Chrd chordin ISO
IEA
(MGI:MGI:3525426|PMID:15381701)
GO_REF:0000107
RGD
Ensembl
PMID:15381701 GO_REF:0000107, MGI:MGI:3525426 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Col11a2 collagen type XI alpha 2 chain IEP RGD PMID:11780999 RGD:1342432 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO (PMID:16311053) RGD PMID:16311053 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 ISO
ISS
(MGI:MGI:4438316|PMID:19767743)
GO_REF:0000024
RGD
UniProt
PMID:19767743 GO_REF:0000024, MGI:MGI:4438316 NCBI chr 3:80,892,433...80,933,283
Ensembl chr 3:80,892,435...80,933,283
JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 3:168,097,484...168,111,920
Ensembl chr 3:168,097,485...168,111,920
JBrowse link
G Dhh desert hedgehog signaling molecule ISO (MGI:MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:MGI:5698232 NCBI chr 7:140,575,288...140,580,783
Ensembl chr 7:140,575,288...140,580,783
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO MGI:MGI:3526402 (MGI:MGI:5780798|PMID:21308776) RGD PMID:21308776 MGI:MGI:5780798 NCBI chr 6:133,576,513...133,583,751
Ensembl chr 6:133,552,821...133,583,751
JBrowse link
G Dlx5 distal-less homeobox 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3522068|PMID:15383550)
Ensembl
UniProt
RGD
PMID:15383550 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3522068 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Epha2 Eph receptor A2 ISO (MGI:MGI:5284751|PMID:19299512) RGD PMID:19299512 MGI:MGI:5284751 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:MGI:2135961 (MGI:MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:MGI:3716021 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Fhl2 four and a half LIM domains 2 ISO (PMID:16311053) RGD PMID:16311053 NCBI chr 9:49,920,611...49,994,906
Ensembl chr 9:49,920,854...49,950,093
JBrowse link
G Fignl1 fidgetin-like 1 ISO
ISS
(MGI:MGI:4943395|PMID:17352653)
GO_REF:0000024
RGD
UniProt
PMID:17352653 GO_REF:0000024, MGI:MGI:4943395 NCBI chr14:91,895,902...91,904,474
Ensembl chr14:91,895,909...91,904,433
JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IMP RGD PMID:12054677 RGD:625463 NCBI chr20:1,955,344...1,984,907
Ensembl chr20:1,955,359...1,984,863
JBrowse link
G Gdf10 growth differentiation factor 10 IEP
IEA
GO_REF:0000002 InterPro PMID:15994055 GO_REF:0000002, RGD:2316368 NCBI chr16:10,250,508...10,262,383
Ensembl chr16:10,250,404...10,263,150
JBrowse link
G Gdf2 growth differentiation factor 2 ISO MGI:MGI:1341800|MGI:MGI:96396|MGI:MGI:96397|MGI:MGI:96398 (MGI:MGI:3050935|PMID:15161906), (MGI:MGI:3836510|PMID:18986983) RGD PMID:15161906, PMID:18986983 MGI:MGI:3050935, MGI:MGI:3836510 NCBI chr16:10,267,510...10,293,545
Ensembl chr16:10,267,482...10,273,239
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:MGI:1857177|MGI:MGI:2445468|MGI:MGI:3776013 (MGI:MGI:2656409|PMID:12606326), (MGI:MGI:5311551|PMID:21934140) RGD PMID:12606326, PMID:21934140 MGI:MGI:2656409, MGI:MGI:5311551 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gli1 GLI family zinc finger 1 ISO (PMID:12165851) RGD PMID:12165851 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1915509 (MGI:MGI:5431249|PMID:22771375)
(PMID:12165851)
RGD PMID:12165851, PMID:22771375 MGI:MGI:5431249 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Glis1 GLIS family zinc finger 1 ISO (MGI:MGI:6294234|PMID:30544251) RGD PMID:30544251 MGI:MGI:6294234 NCBI chr 5:127,043,344...127,233,395
Ensembl chr 5:127,160,495...127,233,078
JBrowse link
G Gpnmb glycoprotein nmb IEP RGD PMID:11746512 RGD:632991 NCBI chr 4:78,694,447...78,715,685
Ensembl chr 4:78,694,447...78,715,683
JBrowse link
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768|MGI:MGI:1913653|MGI:MGI:99430 (MGI:MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:MGI:5430686 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686|MGI:MGI:1913653|MGI:MGI:99430 (MGI:MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:MGI:5430686 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Hira histone cell cycle regulator ISO MGI:MGI:1097686|MGI:MGI:1101768|MGI:MGI:3650546 (MGI:MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:MGI:5430686 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein ISO (MGI:MGI:4818501|PMID:20628571) RGD PMID:20628571 MGI:MGI:4818501 NCBI chr17:16,692,557...16,695,126
Ensembl chr17:16,692,557...16,695,126
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:MGI:3689350|MGI:MGI:5818514|MGI:MGI:95728 (MGI:MGI:5431249|PMID:22771375), (MGI:MGI:5807019|PMID:26996322) RGD PMID:22771375, PMID:26996322 MGI:MGI:5431249, MGI:MGI:5807019 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Igf1 insulin-like growth factor 1 ISO (PMID:16311053) RGD PMID:16311053 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Igf2 insulin-like growth factor 2 ISO
IEA
(PMID:16311053)
GO_REF:0000107
RGD
Ensembl
PMID:16311053 GO_REF:0000107 NCBI chr 1:215,828,102...215,839,081
Ensembl chr 1:215,828,102...215,846,911
JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 ISO
IEA
(PMID:16311053)
GO_REF:0000107
RGD
Ensembl
PMID:16311053 GO_REF:0000107 NCBI chr14:87,457,647...87,465,374
Ensembl chr14:87,457,647...87,465,374
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 ISO (PMID:16311053) RGD PMID:16311053 NCBI chr 9:80,154,230...80,166,813
Ensembl chr 9:80,150,211...80,167,033
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1928765|MGI:MGI:1934258 (MGI:MGI:3036410|PMID:14973297), (MGI:MGI:5698232|PMID:25639508) RGD PMID:14973297, PMID:25639508 MGI:MGI:3036410, MGI:MGI:5698232 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Il18 interleukin 18 IEP RGD PMID:18165223 RGD:4889468 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO
IEA
MGI:MGI:2176174|MGI:MGI:3036209 (MGI:MGI:3029146|PMID:14769860)
GO_REF:0000107
RGD
Ensembl
PMID:14769860 GO_REF:0000107, MGI:MGI:3029146 NCBI chr19:26,092,972...26,094,756
Ensembl chr19:26,092,974...26,094,756
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IEA
ISO
GO_REF:0000107
(PMID:20128911)
Ensembl
RGD
PMID:20128911 GO_REF:0000107 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 ISO
ISS
(MGI:MGI:4360132|PMID:19605502)
GO_REF:0000024
RGD
UniProt
PMID:19605502 GO_REF:0000024, MGI:MGI:4360132 NCBI chr 3:101,051,960...101,152,119
Ensembl chr 3:101,051,955...101,152,119
JBrowse link
G Lox lysyl oxidase ISO MGI:MGI:3610732 (MGI:MGI:5603515|PMID:19458888) RGD PMID:19458888 MGI:MGI:5603515 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Lrrc17 leucine rich repeat containing 17 NOT ISO (MGI:MGI:3850892|PMID:19336404) RGD PMID:19336404 MGI:MGI:3850892 NCBI chr 4:10,108,184...10,138,652
Ensembl chr 4:10,108,192...10,138,652
JBrowse link
G Mef2c myocyte enhancer factor 2C IEA
ISO
GO_REF:0000107
MGI:MGI:99533 (MGI:MGI:3701381|PMID:17336904), (PMID:21652706)
Ensembl
RGD
PMID:17336904, PMID:21652706 GO_REF:0000107, MGI:MGI:3701381 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mef2d myocyte enhancer factor 2D ISO
IEA
MGI:MGI:99458 (MGI:MGI:3701381|PMID:17336904)
GO_REF:0000107
RGD
Ensembl
PMID:17336904 GO_REF:0000107, MGI:MGI:3701381 NCBI chr 2:187,511,775...187,541,285
Ensembl chr 2:187,512,164...187,538,026
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEP RGD PMID:10528234 RGD:10043160 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Msx2 msh homeobox 2 ISO
ISS
(MGI:MGI:3522068|PMID:15383550)
GO_REF:0000024
RGD
UniProt
PMID:15383550 GO_REF:0000024, MGI:MGI:3522068 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Myoc myocilin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5503270|PMID:23629661)
(PMID:23629661)
Ensembl
UniProt
RGD
PMID:23629661 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5503270 NCBI chr13:80,517,531...80,527,928
Ensembl chr13:80,517,536...80,527,928
JBrowse link
G Nf1 neurofibromin 1 ISO
ISS
IEA
MGI:MGI:1857478 (MGI:MGI:3690406|PMID:16893911)
GO_REF:0000024
GO_REF:0000107
RGD
HGNC
Ensembl
PMID:16893911 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3690406 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Nog noggin ISO
IBA
ISS
IEA
(MGI:MGI:3810620|PMID:10780858)
PMID:21873635
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:10780858, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3810620, RGD:13792537 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nr1i3 nuclear receptor subfamily 1, group I, member 3 IEP RGD PMID:19702932 RGD:9835391 NCBI chr13:89,585,072...89,591,278
Ensembl chr13:89,586,283...89,591,277
JBrowse link
G Pcp4 Purkinje cell protein 4 IEP RGD PMID:18008138 RGD:9850248 NCBI chr11:36,851,035...36,912,272
Ensembl chr11:36,851,038...36,912,229
JBrowse link
G Penk proenkephalin IEP RGD PMID:8584038 RGD:10003035 NCBI chr 5:17,056,412...17,061,762
Ensembl chr 5:17,056,419...17,061,837
JBrowse link
G Rack1 receptor for activated C kinase 1 HDA PMID:16210410 UniProt PMID:16210410 RGD:8655526 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Rps11 ribosomal protein S11 HDA PMID:16210410 UniProt PMID:16210410 RGD:8655526 NCBI chr 1:101,116,641...101,118,749
Ensembl chr 1:101,116,635...101,118,825
JBrowse link
G Rspo2 R-spondin 2 ISO MGI:MGI:88177 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 7:81,919,911...82,059,659
Ensembl chr 7:81,924,050...82,059,789
JBrowse link
G Runx2 RUNX family transcription factor 2 IMP
ISO
MGI:MGI:1917649|MGI:MGI:2183833|MGI:MGI:88177 (MGI:MGI:3528197|PMID:15389629), (MGI:MGI:3528208|PMID:15565649), (MGI:MGI:3587162|PMID:16099986)
(PMID:20128911)
RGD PMID:15389629, PMID:15565649, PMID:16099986, PMID:20128911, PMID:19940863 MGI:MGI:3528197, MGI:MGI:3528208, MGI:MGI:3587162, RGD:12880052 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEP
ISO
IEA
PMID:16149051
(PMID:16149051)
GO_REF:0000107
RGD
Ensembl
PMID:16149051, PMID:16149051 GO_REF:0000107, RGD:4107087 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:MGI:3626291 (MGI:MGI:3805084|PMID:18514492) RGD PMID:18514492 MGI:MGI:3805084 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Sirt7 sirtuin 7 ISS
ISO
GO_REF:0000024
(MGI:MGI:6209006|PMID:30026585)
UniProt
RGD
PMID:30026585 GO_REF:0000024, MGI:MGI:6209006 NCBI chr10:109,796,046...109,802,821
Ensembl chr10:109,796,020...109,802,739
JBrowse link
G Smad3 SMAD family member 3 ISO (MGI:MGI:3654245|PMID:11585338) RGD PMID:11585338 MGI:MGI:3654245 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad4 SMAD family member 4 IMP RGD PMID:19940863 RGD:12880052 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smo smoothened, frizzled class receptor IEP
IEA
ISO
GO_REF:0000107
MGI:MGI:2176256 (MGI:MGI:3036410|PMID:14973297)
Ensembl
RGD
PMID:14973297, PMID:19649528 GO_REF:0000107, MGI:MGI:3036410, RGD:2324984 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO (PMID:20128911) RGD PMID:20128911 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO (PMID:20128911) RGD PMID:20128911 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (PMID:18187129) RGD PMID:18187129 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO
ISS
MGI:MGI:2154329 (MGI:MGI:3577129|PMID:15753123)
GO_REF:0000024
RGD
UniProt
PMID:15753123 GO_REF:0000024, MGI:MGI:3577129 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sp7 Sp7 transcription factor ISO MGI:MGI:2159411 (MGI:MGI:2158114|PMID:11792318)
(PMID:18932205)
RGD PMID:11792318, PMID:18932205 MGI:MGI:2158114 NCBI chr 7:143,957,316...143,967,488
Ensembl chr 7:143,958,858...143,967,484
JBrowse link
G Spp1 secreted phosphoprotein 1 IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:15598896, PMID:21873635 RGD:1581126, RGD:13792537 NCBI chr14:6,673,686...6,679,965
Ensembl chr14:6,673,686...6,679,901
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:MGI:5617089|PMID:25382630) RGD PMID:25382630 MGI:MGI:5617089 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Tmem119 transmembrane protein 119 ISO (MGI:MGI:4946996|PMID:21239498) RGD PMID:21239498 MGI:MGI:4946996 NCBI chr12:48,598,498...48,605,704
Ensembl chr12:48,598,647...48,605,704
JBrowse link
G Tmsb4x thymosin beta 4, X-linked IEP RGD PMID:2325669 RGD:729958 NCBI chr  X:28,593,405...28,617,267
Ensembl chr  X:28,593,405...28,595,395
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISO
IEA
(MGI:MGI:5314685|PMID:21467300)
GO_REF:0000107
RGD
Ensembl
PMID:21467300 GO_REF:0000107, MGI:MGI:5314685 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:MGI:1857265|MGI:MGI:3038818 (MGI:MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:MGI:3044412 (MGI:MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:MGI:3042355 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:MGI:1922667|MGI:MGI:88177 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:88613 (MGI:MGI:3620470|PMID:16581771) RGD PMID:16581771 MGI:MGI:3620470 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wwox WW domain-containing oxidoreductase ISO MGI:MGI:3704944 (MGI:MGI:3804353|PMID:18487609) RGD PMID:18487609 MGI:MGI:3804353 NCBI chr19:46,761,353...47,695,247 JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 ISO MGI:MGI:88177 (MGI:MGI:3587162|PMID:16099986) RGD PMID:16099986 MGI:MGI:3587162 NCBI chr 2:147,577,149...147,693,033
Ensembl chr 2:147,577,089...147,693,082
JBrowse link
canonical Wnt signaling pathway involved in osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd1 frizzled class receptor 1 ISO
IEA
(PMID:20039315)
GO_REF:0000107
RGD
Ensembl
PMID:20039315 GO_REF:0000107 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Wnt3 Wnt family member 3 ISO
IEA
(PMID:20039315)
GO_REF:0000107
RGD
Ensembl
PMID:20039315 GO_REF:0000107 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
negative regulation of canonical Wnt signaling pathway involved in osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnn tenascin N ISO (MGI:MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:MGI:3710297 NCBI chr13:77,829,384...77,896,831
Ensembl chr13:77,829,382...77,896,697
JBrowse link
negative regulation of osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor IDA RGD PMID:12193573 RGD:625678 NCBI chr 6:54,963,990...55,001,806
Ensembl chr 6:54,963,990...55,001,464
JBrowse link
G Areg amphiregulin IDA RGD PMID:15509566 RGD:1578718 NCBI chr14:18,521,921...18,531,179
Ensembl chr14:18,521,930...18,531,179
JBrowse link
G Axin2 axin 2 ISO
IEA
MGI:MGI:3579503 (MGI:MGI:3578608|PMID:15790973)
GO_REF:0000107
RGD
Ensembl
PMID:15790973 GO_REF:0000107, MGI:MGI:3578608 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Bambi BMP and activin membrane-bound inhibitor ISO
IEA
(PMID:21042576), (PMID:21743293)
GO_REF:0000107
RGD
Ensembl
PMID:21042576, PMID:21743293 GO_REF:0000107 NCBI chr17:56,905,419...56,909,675
Ensembl chr17:56,905,112...56,909,992
JBrowse link
G Cdk6 cyclin-dependent kinase 6 ISO (PMID:15254224) RGD PMID:15254224 NCBI chr 4:27,781,728...27,969,653
Ensembl chr 4:27,785,647...27,966,398
JBrowse link
G Chrd chordin ISO
IEA
(PMID:18533030)
GO_REF:0000107
(MGI:MGI:3577114|PMID:15780974)
RGD
Ensembl
PMID:15780974, PMID:18533030 GO_REF:0000107, MGI:MGI:3577114 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 ISO (MGI:MGI:4410428|PMID:18187554) RGD PMID:18187554 MGI:MGI:4410428 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Crim1 cysteine rich transmembrane BMP regulator 1 ISO
IEA
(PMID:21042576), (PMID:21743293)
GO_REF:0000107
RGD
Ensembl
PMID:21042576, PMID:21743293 GO_REF:0000107 NCBI chr 6:788,490...962,663
Ensembl chr 6:788,548...960,703
JBrowse link
G Fgf23 fibroblast growth factor 23 ISO (PMID:18282132) RGD PMID:18282132 NCBI chr 4:159,622,404...159,630,082
Ensembl chr 4:159,622,404...159,630,082
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:18690792 RGD:2325179 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Fndc3b fibronectin type III domain containing 3B ISO MGI:MGI:4822558 (MGI:MGI:4818857|PMID:20493170) RGD PMID:20493170 MGI:MGI:4818857 NCBI chr 2:113,109,949...113,415,171
Ensembl chr 2:113,112,902...113,345,577
JBrowse link
G Gdf10 growth differentiation factor 10 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5545973|PMID:21712809)
Ensembl
UniProt
RGD
PMID:21712809 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5545973 NCBI chr16:10,250,508...10,262,383
Ensembl chr16:10,250,404...10,263,150
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO
IMP
ISS
(PMID:27036124)
PMID:27910957
GO_REF:0000024
RGD
UniProt
PMID:27036124, PMID:27910957 GO_REF:0000024, RGD:38501075 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 ISO
IEA
MGI:MGI:2653307 (MGI:MGI:3830408|PMID:19144722)
GO_REF:0000107
RGD
Ensembl
PMID:19144722 GO_REF:0000107, MGI:MGI:3830408 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hdac4 histone deacetylase 4 ISO (MGI:MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:MGI:3584056 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 ISO (MGI:MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:MGI:3584056 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac7 histone deacetylase 7 IEA
ISO
GO_REF:0000107
(PMID:17997710)
Ensembl
RGD
PMID:17997710 GO_REF:0000107 NCBI chr 7:139,280,396...139,319,108
Ensembl chr 7:139,281,187...139,318,455
JBrowse link
G Hdac8 histone deacetylase 8 IMP RGD PMID:25019367 RGD:13208813 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044
JBrowse link
G Hoxa2 homeobox A2 ISO (MGI:MGI:4948784|PMID:21324897) RGD PMID:21324897 MGI:MGI:4948784 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Id1 inhibitor of DNA binding 1, HLH protein ISO MGI:MGI:1321394 (MGI:MGI:3050935|PMID:15161906) RGD PMID:15161906 MGI:MGI:3050935 NCBI chr 3:148,214,623...148,216,715
Ensembl chr 3:148,215,540...148,216,718
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO MGI:MGI:1321394 (MGI:MGI:3050908|PMID:15246553) RGD PMID:15246553 MGI:MGI:3050908 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Id3 inhibitor of DNA binding 3, HLH protein ISO MGI:MGI:1321394 (MGI:MGI:3050935|PMID:15161906) RGD PMID:15161906 MGI:MGI:3050935 NCBI chr 5:154,489,603...154,491,172
Ensembl chr 5:154,489,590...154,491,223
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 ISO MGI:MGI:87986|MGI:MGI:88177 (MGI:MGI:3837587|PMID:19208758) RGD PMID:19208758 MGI:MGI:3837587 NCBI chr 9:80,154,230...80,166,813
Ensembl chr 9:80,150,211...80,167,033
JBrowse link
G Limd1 LIM domains containing 1 ISO
ISS
(MGI:MGI:3807091|PMID:18657804)
GO_REF:0000024
RGD
UniProt
PMID:18657804 GO_REF:0000024, MGI:MGI:3807091 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (PMID:17680723) RGD PMID:17680723 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Men1 menin 1 ISO MGI:MGI:1316736 (PMID:15563473)
MGI:MGI:96648 (MGI:MGI:3056877|PMID:15150273), (MGI:MGI:3573815|PMID:15563473)
RGD PMID:15150273, PMID:15563473 MGI:MGI:3056877, MGI:MGI:3573815 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Mir125a microRNA 125a IMP RGD PMID:29319166 RGD:26884461 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Mir133a1 microRNA 133a-1 ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr18:2,052,478...2,052,564 JBrowse link
G Mir137 microRNA 137 ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr 2:221,658,106...221,658,207
Ensembl chr 2:221,658,106...221,658,207
JBrowse link
G Mir204 microRNA 204 ISO
IMP
(MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588, PMID:29319166 MGI:MGI:5013854, RGD:26884461 NCBI chr 1:240,403,000...240,403,109
Ensembl chr 1:240,403,000...240,403,109
JBrowse link
G Mir205 microRNA 205 ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr13:112,233,283...112,233,390
Ensembl chr13:112,233,283...112,233,390
JBrowse link
G Mir217 microRNA 217 ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr14:113,119,529...113,119,633
Ensembl chr14:113,119,529...113,119,633
JBrowse link
G Mir23a microRNA 23a ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
G Mir30c1 microRNA 30c-1 ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr 5:139,699,877...139,699,965
Ensembl chr 5:139,699,877...139,699,965
JBrowse link
G Mir30c2 microRNA 30c-2 ISO (MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:MGI:5013854 NCBI chr 9:29,562,376...29,562,459
Ensembl chr 9:29,562,376...29,562,459
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor ISO
IEA
(MGI:MGI:4818844|PMID:20616007)
GO_REF:0000107
RGD
Ensembl
PMID:20616007 GO_REF:0000107, MGI:MGI:4818844 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 ISO (MGI:MGI:4398991|PMID:19463978) RGD PMID:19463978 MGI:MGI:4398991 NCBI chr18:77,203,517...77,322,690
Ensembl chr18:77,203,525...77,322,690
JBrowse link
G Noct nocturnin ISO
ISS
(MGI:MGI:4457955|PMID:20498072)
GO_REF:0000024
RGD
UniProt
PMID:20498072 GO_REF:0000024, MGI:MGI:4457955 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Nog noggin ISO
IEA
(PMID:20675382)
GO_REF:0000107
RGD
Ensembl
PMID:20675382 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:4412151|PMID:19695258) RGD PMID:19695258 MGI:MGI:4412151 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Ostn osteocrin ISO (MGI:MGI:2683819|PMID:14523025) RGD PMID:14523025 MGI:MGI:2683819 NCBI chr11:76,851,923...76,888,140
Ensembl chr11:76,851,322...76,888,178
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO
IEA
(PMID:21042576), (PMID:21743293)
GO_REF:0000107
RGD
Ensembl
PMID:21042576, PMID:21743293 GO_REF:0000107 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Ptch1 patched 1 ISO (PMID:16229683) RGD PMID:16229683 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Ranbp3l RAN binding protein 3-like ISO (MGI:MGI:5883200|PMID:25755279) RGD PMID:25755279 MGI:MGI:5883200 NCBI chr 2:58,221,773...58,458,072
Ensembl chr 2:58,448,917...58,458,517
JBrowse link
G Riox1 ribosomal oxygenase 1 ISO (MGI:MGI:4418587|PMID:19927124) RGD PMID:19927124 MGI:MGI:4418587 NCBI chr 6:107,428,508...107,431,126
Ensembl chr 6:107,428,508...107,431,116
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5554363|PMID:22189870)
Ensembl
UniProt
RGD
PMID:22189870 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5554363 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Sema4d semaphorin 4D ISO (MGI:MGI:5297297|PMID:22019888) RGD PMID:22019888 MGI:MGI:5297297 NCBI chr17:13,516,276...13,538,513
Ensembl chr17:13,488,376...13,553,974
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:3045799 (MGI:MGI:3040721|PMID:14976225)
GO_REF:0000107
RGD
Ensembl
PMID:14976225 GO_REF:0000107, MGI:MGI:3040721 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Ski SKI proto-oncogene ISO (PMID:14699069) RGD PMID:14699069 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:MGI:3056877 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad6 SMAD family member 6 ISO (PMID:22275001) RGD PMID:22275001 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (MGI:MGI:3577701|PMID:15781477) RGD PMID:15781477 MGI:MGI:3577701 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO
GO_REF:0000024
(MGI:MGI:5317468|PMID:22421045), (MGI:MGI:6323929|PMID:31121357), (MGI:MGI:6414737|PMID:32103177)
UniProt
RGD
PMID:22421045, PMID:31121357, PMID:32103177 GO_REF:0000024, MGI:MGI:5317468, MGI:MGI:6323929, MGI:MGI:6414737 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tmem64 transmembrane protein 64 ISO (MGI:MGI:5643786|PMID:25979161) RGD PMID:25979161 MGI:MGI:5643786 NCBI chr 5:28,850,864...28,898,203
Ensembl chr 5:28,850,950...28,867,227
JBrowse link
G Tnf tumor necrosis factor ISO (MGI:MGI:5285024|PMID:21689636) RGD PMID:21689636 MGI:MGI:5285024 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tnn tenascin N ISO (MGI:MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:MGI:3710297 NCBI chr13:77,829,384...77,896,831
Ensembl chr13:77,829,382...77,896,697
JBrowse link
G Tob1 transducer of ErbB-2.1 ISO
IEA
MGI:MGI:1933294 (MGI:MGI:1928565|PMID:11163184)
GO_REF:0000107
RGD
Ensembl
PMID:11163184 GO_REF:0000107, MGI:MGI:1928565 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 IMP RGD PMID:23081848 RGD:10003033 NCBI chr 1:101,293,300...101,323,484
Ensembl chr 1:101,293,409...101,323,960
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (MGI:MGI:3042355|PMID:15030764)
(PMID:16888803)
RGD PMID:15030764, PMID:16888803 MGI:MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO
ISS
MGI:MGI:3044412 (MGI:MGI:3042355|PMID:15030764)
GO_REF:0000024
(PMID:11062344)
RGD
UniProt
PMID:11062344, PMID:15030764 GO_REF:0000024, MGI:MGI:3042355 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 ISO (MGI:MGI:3577114|PMID:15780974) RGD PMID:15780974 MGI:MGI:3577114 NCBI chr 9:113,699,151...113,732,601
Ensembl chr 9:113,699,170...113,732,622
JBrowse link
G Ucma upper zone of growth plate and cartilage matrix associated ISO (MGI:MGI:3784758|PMID:18156182) RGD PMID:18156182 MGI:MGI:3784758 NCBI chr17:77,252,099...77,262,301
Ensembl chr17:77,252,100...77,261,731
JBrowse link
G Vegfc vascular endothelial growth factor C ISO (MGI:MGI:6378108|PMID:26934950) RGD PMID:26934950 MGI:MGI:6378108 NCBI chr16:40,440,371...40,555,178
Ensembl chr16:40,440,207...40,555,576
JBrowse link
osteoblast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Ache acetylcholinesterase ISO
IEA
(PMID:15454088)
GO_REF:0000107
RGD
Ensembl
PMID:15454088 GO_REF:0000107 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEP RGD PMID:20020468 RGD:2316141 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha IEP RGD PMID:1377818 RGD:69946 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Clec5a C-type lectin domain containing 5A ISO (MGI:MGI:3839503|PMID:19251634) RGD PMID:19251634 MGI:MGI:3839503 NCBI chr 4:68,810,330...68,819,921
Ensembl chr 4:68,808,359...68,819,928
JBrowse link
G Esr1 estrogen receptor 1 IEP RGD PMID:9528993 RGD:2313676 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Gli2 GLI family zinc finger 2 ISO (MGI:MGI:3653954|PMID:16880529) RGD PMID:16880529 MGI:MGI:3653954 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Hdac4 histone deacetylase 4 ISO (MGI:MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:MGI:3584056 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 ISO (MGI:MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:MGI:3584056 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:MGI:99829 (MGI:MGI:3836510|PMID:18986983) RGD PMID:18986983 MGI:MGI:3836510 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:MGI:2679336 (MGI:MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:MGI:3692344 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit ISO MGI:MGI:1316736 (MGI:MGI:3573815|PMID:15563473) RGD PMID:15563473 MGI:MGI:3573815 NCBI chr16:20,485,028...20,486,707
Ensembl chr16:20,485,029...20,486,707
JBrowse link
G Limd1 LIM domains containing 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:3698661|PMID:17092936), (MGI:MGI:3807091|PMID:18657804)
UniProt
RGD
PMID:17092936, PMID:18657804 GO_REF:0000024, MGI:MGI:3698661, MGI:MGI:3807091 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G LOC102554748 nidogen-2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO
IBA
MGI:MGI:3612485 (MGI:MGI:3694400|PMID:16790443), (MGI:MGI:4835143|PMID:17700537)
PMID:21873635
RGD PMID:16790443, PMID:17700537, PMID:21873635 MGI:MGI:3694400, MGI:MGI:4835143, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Men1 menin 1 ISO MGI:MGI:1316736 (PMID:15563473)
MGI:MGI:1201674|MGI:MGI:96648 (MGI:MGI:3056877|PMID:15150273), (MGI:MGI:3573815|PMID:15563473)
RGD PMID:15150273, PMID:15563473 MGI:MGI:3056877, MGI:MGI:3573815 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Msx2 msh homeobox 2 IEP
IEA
ISO
GO_REF:0000107
MGI:MGI:1926381 (MGI:MGI:1355063|PMID:10742104)
Ensembl
RGD
PMID:10742104, PMID:11336915 GO_REF:0000107, MGI:MGI:1355063, RGD:5132630 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Pth1r parathyroid hormone 1 receptor ISO MGI:MGI:2154519 (MGI:MGI:3624906|PMID:9832460) RGD PMID:9832460 MGI:MGI:3624906 NCBI chr 8:118,984,531...119,012,803
Ensembl chr 8:118,988,053...119,012,671
JBrowse link
G Pthlh parathyroid hormone-like hormone TAS
IBA
ISO
PMID:21873635
MGI:MGI:2154515 (MGI:MGI:3624906|PMID:9832460)
RGD PMID:9832460, PMID:12706025, PMID:21873635 MGI:MGI:3624906, RGD:1601570, RGD:13792537 NCBI chr 4:181,663,425...181,674,181 JBrowse link
G Runx2 RUNX family transcription factor 2 ISO
IEA
MGI:MGI:1341800 (MGI:MGI:3836510|PMID:18986983)
GO_REF:0000107
RGD
Ensembl
PMID:18986983 GO_REF:0000107, MGI:MGI:3836510 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Satb2 SATB homeobox 2 ISO MGI:MGI:3692768|MGI:MGI:96174 (MGI:MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:MGI:3692344 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
IEA
(MGI:MGI:3653954|PMID:16880529)
GO_REF:0000107
RGD
Ensembl
PMID:16880529 GO_REF:0000107, MGI:MGI:3653954 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:MGI:3056877 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tnn tenascin N ISO (MGI:MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:MGI:3710297 NCBI chr13:77,829,384...77,896,831
Ensembl chr13:77,829,382...77,896,697
JBrowse link
osteoblast fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Men1 menin 1 ISO MGI:MGI:109452|MGI:MGI:1328787|MGI:MGI:99829 (MGI:MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:MGI:3056877 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO
IEA
MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273)
GO_REF:0000107
RGD
Ensembl
PMID:15150273 GO_REF:0000107, MGI:MGI:3056877 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B ISO (MGI:MGI:5800302|PMID:27711054) RGD PMID:27711054 MGI:MGI:5800302 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Smad1 SMAD family member 1 ISO
IEA
MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273)
GO_REF:0000107
RGD
Ensembl
PMID:15150273 GO_REF:0000107, MGI:MGI:3056877 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad5 SMAD family member 5 ISO MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:MGI:3056877 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
positive regulation of osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr2a activin A receptor type 2A ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Atp6ap1 ATPase H+ transporting accessory protein 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5575464|PMID:22467241)
Ensembl
UniProt
RGD
PMID:22467241 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5575464 NCBI chr  X:156,407,973...156,415,053
Ensembl chr  X:156,407,937...156,415,145
JBrowse link
G Atraid all-trans retinoic acid-induced differentiation factor ISO (PMID:21723284) RGD PMID:21723284 NCBI chr 6:26,680,628...26,685,185
Ensembl chr 6:26,680,598...26,685,235
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:3050916|PMID:15175325), (MGI:MGI:3587162|PMID:16099986), (MGI:MGI:5009350|PMID:20675382)
(PMID:15254224), (PMID:16433617), (PMID:18436533), (PMID:20576608)
UniProt
RGD
PMID:15175325, PMID:15254224, PMID:16099986, PMID:16433617, PMID:18436533, PMID:20576608, PMID:20675382 GO_REF:0000024, MGI:MGI:3050916, MGI:MGI:3587162, MGI:MGI:5009350 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 IMP
ISO
ISS
IEA
IDA
(PMID:14749725), (PMID:18436533)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:14749725, PMID:18436533, PMID:17112416, PMID:16245174 GO_REF:0000024, GO_REF:0000107, RGD:1643600, RGD:2289011 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp6 bone morphogenetic protein 6 IMP
ISO
(PMID:18436533) RGD PMID:18436533, PMID:9202223 RGD:2289027 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (PMID:18436533) RGD PMID:18436533 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Ccn1 cellular communication network factor 1 ISO
IEA
(PMID:20675382)
GO_REF:0000107
RGD
Ensembl
PMID:20675382 GO_REF:0000107 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Ccn4 cellular communication network factor 4 IEA
ISO
GO_REF:0000107
(PMID:20684029)
Ensembl
RGD
PMID:20684029 GO_REF:0000107 NCBI chr 7:107,695,227...107,723,759
Ensembl chr 7:107,695,215...107,723,772
JBrowse link
G Cd276 Cd276 molecule ISO MGI:MGI:3033707 (MGI:MGI:3052626|PMID:15317945) RGD PMID:15317945 MGI:MGI:3052626 NCBI chr 8:63,312,060...63,350,411
Ensembl chr 8:63,318,019...63,350,269
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha ISO
IEA
(MGI:MGI:3050916|PMID:15175325)
GO_REF:0000107
RGD
Ensembl
PMID:15175325 GO_REF:0000107, MGI:MGI:3050916 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta ISO (MGI:MGI:3050916|PMID:15175325) RGD PMID:15175325 MGI:MGI:3050916 NCBI chr 3:164,424,502...164,425,933
Ensembl chr 3:164,424,515...164,425,910
JBrowse link
G Cebpd CCAAT/enhancer binding protein delta ISO (MGI:MGI:3050916|PMID:15175325) RGD PMID:15175325 MGI:MGI:3050916 NCBI chr11:89,008,008...89,009,146
Ensembl chr11:89,008,008...89,009,146
JBrowse link
G Clic1 chloride intracellular channel 1 ISO (MGI:MGI:4410403|PMID:19703605) RGD PMID:19703605 MGI:MGI:4410403 NCBI chr20:5,040,314...5,049,166
Ensembl chr20:5,040,337...5,049,166
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 ISO MGI:MGI:3830252 (MGI:MGI:3829514|PMID:18779865) RGD PMID:18779865 MGI:MGI:3829514 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148591|MGI:MGI:2148594|MGI:MGI:2450929 (MGI:MGI:3578464|PMID:15866163)
GO_REF:0000107
RGD
Ensembl
PMID:15866163 GO_REF:0000107, MGI:MGI:3578464 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 ISO (PMID:18977368) RGD PMID:18977368 NCBI chr 5:166,464,170...166,513,030
Ensembl chr 5:166,464,252...166,513,027
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (PMID:20564243) RGD PMID:20564243 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Dlx5 distal-less homeobox 5 IMP RGD PMID:12815054 RGD:1298882 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:6450489|PMID:25498833)
Ensembl
RGD
PMID:25498833 GO_REF:0000107, MGI:MGI:6450489 NCBI chr 2:251,912,432...251,970,699
Ensembl chr 2:251,912,368...251,970,768
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO (MGI:MGI:5427766|PMID:22615579) RGD PMID:22615579 MGI:MGI:5427766 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Fbn2 fibrillin 2 ISO (MGI:MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:MGI:4836762 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Fbxo5 F-box protein 5 ISO (PMID:29850565) RGD PMID:29850565 NCBI chr 1:42,461,277...42,467,646
Ensembl chr 1:42,461,291...42,467,586
JBrowse link
G Fermt2 fermitin family member 2 ISO (PMID:29496737)
(MGI:MGI:6149626|PMID:29496737)
RGD PMID:29496737 MGI:MGI:6149626 NCBI chr15:19,807,806...19,876,557
Ensembl chr15:19,807,808...19,876,408
JBrowse link
G Ffar4 free fatty acid receptor 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:6220333|PMID:26365922)
UniProt
RGD
PMID:26365922 GO_REF:0000024, MGI:MGI:6220333 NCBI chr 1:256,786,124...256,804,156
Ensembl chr 1:256,786,124...256,804,156
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO MGI:MGI:95729 (MGI:MGI:4821204|PMID:20570969) RGD PMID:20570969 MGI:MGI:4821204 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Gdf10 growth differentiation factor 10 IDA RGD PMID:12559390 RGD:2316372 NCBI chr16:10,250,508...10,262,383
Ensembl chr16:10,250,404...10,263,150
JBrowse link
G Gdpd2 glycerophosphodiester phosphodiesterase domain containing 2 ISO (MGI:MGI:2679742|PMID:12933806) RGD PMID:12933806 MGI:MGI:2679742 NCBI chr  X:70,563,381...70,572,295
Ensembl chr  X:70,563,570...70,572,295
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276|MGI:MGI:95516 (MGI:MGI:4821204|PMID:20570969) RGD PMID:20570969 MGI:MGI:4821204 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gnas GNAS complex locus ISO MGI:MGI:3043361 (MGI:MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:MGI:3619837 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO MGI:MGI:1321394|MGI:MGI:99829 (MGI:MGI:3836510|PMID:18986983) RGD PMID:18986983 MGI:MGI:3836510 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Igf1 insulin-like growth factor 1 IDA
IEA
ISO
GO_REF:0000107
(PMID:16433617)
Ensembl
RGD
PMID:16433617, PMID:16897348 GO_REF:0000107, RGD:1598452 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Il6 interleukin 6 ISO (PMID:30545407) RGD PMID:30545407 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Il6st interleukin 6 signal transducer ISO
IEA
(PMID:12372336)
GO_REF:0000107
RGD
Ensembl
PMID:12372336 GO_REF:0000107 NCBI chr 2:44,279,199...44,319,427
Ensembl chr 2:44,289,393...44,314,944
JBrowse link
G Ilk integrin-linked kinase ISO (MGI:MGI:5009350|PMID:20675382) RGD PMID:20675382 MGI:MGI:5009350 NCBI chr 1:170,578,941...170,585,192
Ensembl chr 1:170,578,889...170,585,189
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO
IEA
(MGI:MGI:5522615|PMID:23980096)
GO_REF:0000107
RGD
Ensembl
PMID:23980096 GO_REF:0000107, MGI:MGI:5522615 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit ISO MGI:MGI:1316736 (MGI:MGI:3573815|PMID:15563473) RGD PMID:15563473 MGI:MGI:3573815 NCBI chr16:20,485,028...20,486,707
Ensembl chr16:20,485,029...20,486,707
JBrowse link
G Lmna lamin A/C IMP RGD PMID:22119912 RGD:10003161 NCBI chr 2:187,842,884...187,863,552
Ensembl chr 2:187,842,885...187,863,516
JBrowse link
G Lrp3 LDL receptor related protein 3 ISO (PMID:28340487) RGD PMID:28340487 NCBI chr 1:91,447,308...91,462,603
Ensembl chr 1:91,448,361...91,462,603
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (MGI:MGI:6162346|PMID:26891291) RGD PMID:26891291 MGI:MGI:6162346 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Ltf lactotransferrin ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Mef2c myocyte enhancer factor 2C IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5285459|PMID:21652706)
Ensembl
UniProt
RGD
PMID:21652706 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5285459 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Men1 menin 1 ISO MGI:MGI:88177 (MGI:MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:MGI:3056877 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Mir210 microRNA 210 ISO (MGI:MGI:3851892|PMID:19520079) RGD PMID:19520079 MGI:MGI:3851892 NCBI chr 1:214,208,355...214,208,464 JBrowse link
G Mnda myeloid cell nuclear differentiation antigen ISO MGI:MGI:88177 (MGI:MGI:3530710|PMID:15557274) RGD PMID:15557274 MGI:MGI:3530710 NCBI chr13:92,073,664...92,091,335
Ensembl chr13:92,073,668...92,089,980
JBrowse link
G Msx2 msh homeobox 2 ISO
IEA
(MGI:MGI:3050916|PMID:15175325)
GO_REF:0000107
RGD
Ensembl
PMID:15175325 GO_REF:0000107, MGI:MGI:3050916 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Nell1 neural EGFL like 1 ISO
ISS
(PMID:21723284)
GO_REF:0000024
RGD
UniProt
PMID:21723284 GO_REF:0000024 NCBI chr 1:105,348,577...106,218,970
Ensembl chr 1:105,349,069...106,218,958
JBrowse link
G Npnt nephronectin ISO (MGI:MGI:4414689|PMID:19944102), (MGI:MGI:5285024|PMID:21689636) RGD PMID:19944102, PMID:21689636 MGI:MGI:4414689, MGI:MGI:5285024 NCBI chr 2:238,001,767...238,068,886
Ensembl chr 2:238,002,990...238,068,694
JBrowse link
G Nppc natriuretic peptide C IDA RGD PMID:17562543 RGD:1642298 NCBI chr 9:93,731,436...93,735,636
Ensembl chr 9:93,731,436...93,735,636
JBrowse link
G Pdlim7 PDZ and LIM domain 7 IDA RGD PMID:9832452 RGD:632731 NCBI chr17:9,653,510...9,668,715
Ensembl chr17:9,653,561...9,668,712
JBrowse link
G Prkd1 protein kinase D1 ISO
ISS
(MGI:MGI:5306577|PMID:19029091)
GO_REF:0000024
RGD
UniProt
PMID:19029091 GO_REF:0000024, MGI:MGI:5306577 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:14751573 RGD:10043372 NCBI chr 2:54,951,625...54,966,470
Ensembl chr 2:54,952,821...54,963,448
JBrowse link
G Runx2 RUNX family transcription factor 2 IEA
ISO
ISS
GO_REF:0000107
MGI:MGI:1316736|MGI:MGI:1341800 (MGI:MGI:3050916|PMID:15175325), (MGI:MGI:3056877|PMID:15150273), (MGI:MGI:3836510|PMID:18986983)
GO_REF:0000024
(PMID:28703881)
Ensembl
RGD
UniProt
PMID:15150273, PMID:15175325, PMID:18986983, PMID:28703881 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3050916, MGI:MGI:3056877, MGI:MGI:3836510 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 ISO MGI:MGI:5698367|MGI:MGI:96533 (MGI:MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:MGI:5698232 NCBI chr 1:174,428,056...174,495,356
Ensembl chr 1:174,428,699...174,495,258
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:98956 (MGI:MGI:3772759|PMID:18166153) RGD PMID:18166153 MGI:MGI:3772759 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Smad1 SMAD family member 1 ISO
IEA
MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273)
GO_REF:0000107
RGD
Ensembl
PMID:15150273 GO_REF:0000107, MGI:MGI:3056877 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad5 SMAD family member 5 ISO MGI:MGI:1316736 (MGI:MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:MGI:3056877 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(PMID:20626275)
GO_REF:0000024
RGD
UniProt
PMID:20626275 GO_REF:0000024 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Suco SUN domain containing ossification factor IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4452525|PMID:20440000)
Ensembl
UniProt
RGD
PMID:20440000 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4452525 NCBI chr13:79,736,485...79,801,133
Ensembl chr13:79,736,482...79,801,561
JBrowse link
G Tmem119 transmembrane protein 119 ISO
IBA
(PMID:20025746)
(MGI:MGI:4418582|PMID:20025746), (MGI:MGI:5543589|PMID:22416756), (MGI:MGI:6294241|PMID:22579779)
PMID:21873635
RGD PMID:20025746, PMID:22416756, PMID:22579779, PMID:21873635 MGI:MGI:4418582, MGI:MGI:5543589, MGI:MGI:6294241, RGD:13792537 NCBI chr12:48,598,498...48,605,704
Ensembl chr12:48,598,647...48,605,704
JBrowse link
G Tp63 tumor protein p63 ISO (PMID:22521434) RGD PMID:22521434 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048 (MGI:MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:MGI:5461755 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Wnt10b Wnt family member 10B ISO (MGI:MGI:3574150|PMID:15728361), (MGI:MGI:4358631|PMID:19723499) RGD PMID:15728361, PMID:19723499 MGI:MGI:3574150, MGI:MGI:4358631 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
G Wnt4 Wnt family member 4 ISO
IEA
(PMID:17720811)
GO_REF:0000107
RGD
Ensembl
PMID:17720811 GO_REF:0000107 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
G Wnt7b Wnt family member 7B ISO (MGI:MGI:3511731|PMID:15576404) RGD PMID:15576404 MGI:MGI:3511731 NCBI chr 7:126,423,418...126,465,724
Ensembl chr 7:126,420,656...126,465,723
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 ISO UniProtKB:Q96AC1 (PMID:29496737) RGD PMID:29496737 NCBI chr 2:147,577,149...147,693,033
Ensembl chr 2:147,577,089...147,693,082
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO (PMID:29496737) RGD PMID:29496737 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
G Zhx3 zinc fingers and homeoboxes 3 ISO
ISS
(PMID:21174497)
GO_REF:0000024
RGD
UniProt
PMID:21174497 GO_REF:0000024 NCBI chr 3:156,759,820...156,868,173
Ensembl chr 3:156,764,751...156,777,999
JBrowse link
regulation of osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO MGI:MGI:1857966 (MGI:MGI:3584206|PMID:15802266) RGD PMID:15802266 MGI:MGI:3584206 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Atf4 activating transcription factor 4 ISO
ISS
(PMID:15109498)
(MGI:MGI:3040115|PMID:15109498)
GO_REF:0000024
RGD
UniProt
PMID:15109498 GO_REF:0000024, MGI:MGI:3040115 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Ctnnb1 catenin beta 1 ISO MGI:MGI:2148567|MGI:MGI:3044412 (MGI:MGI:3511731|PMID:15576404), (MGI:MGI:3584206|PMID:15802266) RGD PMID:15576404, PMID:15802266 MGI:MGI:3511731, MGI:MGI:3584206 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ddx5 DEAD-box helicase 5 ISO (MGI:MGI:5315698|PMID:17960593) RGD PMID:17960593 MGI:MGI:5315698 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:11381083 RGD:1625633 NCBI chr 1:222,168,729...222,178,842
Ensembl chr 1:222,168,730...222,178,725
JBrowse link
G Fzd1 frizzled class receptor 1 IEP RGD PMID:1334084 RGD:61590 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Gli1 GLI family zinc finger 1 ISO (MGI:MGI:5429486|PMID:22493482) RGD PMID:22493482 MGI:MGI:5429486 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta IMP RGD PMID:28731198 RGD:13792731 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Hemgn hemogen IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11161722, PMID:21873635 RGD:632552, RGD:13792537 NCBI chr 5:62,004,271...62,025,075
Ensembl chr 5:62,005,071...62,025,152
JBrowse link
G Mir188 microRNA 188 ISO (MGI:MGI:5643971|PMID:25751060) RGD PMID:25751060 MGI:MGI:5643971 NCBI chr  X:16,110,270...16,110,349
Ensembl chr  X:16,110,270...16,110,349
JBrowse link
G Nell1 neural EGFL like 1 IMP RGD PMID:12235118 RGD:633405 NCBI chr 1:105,348,577...106,218,970
Ensembl chr 1:105,349,069...106,218,958
JBrowse link
G Pias2 protein inhibitor of activated STAT, 2 ISO (MGI:MGI:3723333|PMID:17623776) RGD PMID:17623776 MGI:MGI:3723333 NCBI chr18:73,479,863...73,524,956
Ensembl chr18:73,378,662...73,524,956
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha ISO
IEA
(PMID:19949837)
GO_REF:0000107
RGD
Ensembl
PMID:19949837 GO_REF:0000107 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Ptk2 protein tyrosine kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:16927379)
Ensembl
UniProt
RGD
PMID:16927379 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:114,436,419...114,611,317
Ensembl chr 7:114,437,361...114,590,119
JBrowse link
G Rassf2 Ras association domain family member 2 ISO
IEA
MGI:MGI:5314787 (MGI:MGI:5314467|PMID:22227519)
GO_REF:0000107
RGD
Ensembl
PMID:22227519 GO_REF:0000107, MGI:MGI:5314467 NCBI chr 3:124,574,088...124,610,267
Ensembl chr 3:124,575,621...124,610,267
JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO
GO_REF:0000024
(MGI:MGI:5641106|PMID:25838543)
UniProt
RGD
PMID:25838543 GO_REF:0000024, MGI:MGI:5641106 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Runx2 RUNX family transcription factor 2 TAS
ISO
(MGI:MGI:5013854|PMID:21628588) RGD PMID:21628588, PMID:9651525 MGI:MGI:5013854, RGD:69800 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 ISO (PMID:20359165) RGD PMID:20359165 NCBI chr 6:104,718,403...104,879,611
Ensembl chr 6:104,718,512...104,877,980
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO (PMID:19756381), (PMID:21182836) RGD PMID:19756381, PMID:21182836 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5315781|PMID:22351931) RGD PMID:22351931 MGI:MGI:5315781 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    multicellular organismal process 9046
      ossification 432
        osteoblast differentiation 225
          canonical Wnt signaling pathway involved in osteoblast differentiation + 3
          negative regulation of osteoblast differentiation 63
          osteoblast development 25
          osteoblast fate commitment 5
          positive regulation of osteoblast differentiation 73
          regulation of osteoblast differentiation + 150
Path 2
Term Annotations click to browse term
  biological_process 20028
    cellular process 18800
      cellular developmental process 4459
        cell differentiation 4364
          osteoblast differentiation 225
            canonical Wnt signaling pathway involved in osteoblast differentiation + 3
            negative regulation of osteoblast differentiation 63
            osteoblast development 25
            osteoblast fate commitment 5
            positive regulation of osteoblast differentiation 73
            regulation of osteoblast differentiation + 150
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.