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ONTOLOGY REPORT - ANNOTATIONS


Term:osteoblast differentiation
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Accession:GO:0001649 term browser browse the term
Definition:The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
Synonyms:exact_synonym: osteoblast cell differentiation



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osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 NOT|involved_in ISO (MGI:5291888|PMID:21784188) RGD PMID:21784188 MGI:5291888 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182767|MGI:3032439 (MGI:5464240|PMID:23123729)
Ensembl
RGD
PMID:23123729 GO_REF:0000107 MGI:5464240 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO MGI:88177|MGI:96440 (MGI:3837587|PMID:19208758) RGD PMID:19208758 MGI:3837587 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO MGI:1097686|MGI:1101768 (MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:5430686 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in TAS
ISO
IBA
IEP
(PMID:17023519)
PMID:21873635
RGD PMID:17023519 PMID:15456860 PMID:21873635 PMID:20022632 RGD:1578394, RGD:13792537, RGD:2316140 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15150273), (PMID:22705305)
(MGI:4829746|PMID:20551513), (MGI:6500778|PMID:7798324)
MGI:101948|MGI:1922667|MGI:87986|MGI:88182|MGI:96440|MGI:99829 (MGI:3528208|PMID:15565649), (MGI:3607617|PMID:16109715), (MGI:3837587|PMID:19208758), (MGI:3850932|PMID:19213727)
Ensembl
RGD
PMID:7798324 PMID:15150273 PMID:15565649 PMID:16109715 PMID:19208758 More... GO_REF:0000107 MGI:3528208 MGI:3607617 MGI:3837587 MGI:3850932 MGI:4829746 MGI:6500778 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp3 bone morphogenetic protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:10,712,489...10,737,153
Ensembl chr14:10,712,489...10,737,153
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
ISO
ISS
IEA
(PMID:17720811)
(MGI:3525426|PMID:15381701)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:15381701 PMID:17720811 GO_REF:0000024 GO_REF:0000107 MGI:3525426 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 acts_upstream_of_or_within IEP
ISO
MGI:88177 (MGI:3607617|PMID:16109715) RGD PMID:16109715 PMID:11995934 MGI:3607617, RGD:2289023 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bmp8a bone morphogenetic protein 8a involved_in ISO (MGI:5487540|PMID:12925636) RGD PMID:12925636 MGI:5487540 NCBI chr 5:135,589,839...135,617,785
Ensembl chr 5:135,591,716...135,617,785
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:6500778|PMID:7798324) RGD PMID:7798324 MGI:6500778 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in ISO (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (MGI:6500778|PMID:7798324) RGD PMID:7798324 MGI:6500778 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Cbfb core-binding factor subunit beta acts_upstream_of_or_within ISO MGI:2447293 (MGI:2446761|PMID:12434156) RGD PMID:12434156 MGI:2446761 NCBI chr19:33,049,162...33,092,752
Ensembl chr19:33,049,172...33,092,751
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:21403648)
UniProt
RGD
PMID:21403648 GO_REF:0000024 NCBI chr10:68,451,388...68,452,938
Ensembl chr10:68,451,388...68,452,938
JBrowse link
G Ccn1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:98956 (MGI:3620470|PMID:16581771)
Ensembl
RGD
PMID:16581771 GO_REF:0000107 MGI:3620470 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Ccn4 cellular communication network factor 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:6294593|PMID:15331410)
Ensembl
RGD
PMID:15331410 GO_REF:0000107 MGI:6294593 NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248
JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO (MGI:3525426|PMID:15381701) RGD PMID:15381701 MGI:3525426 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Col11a2 collagen type XI alpha 2 chain IEP RGD PMID:11780999 RGD:1342432 NCBI chr20:4,786,929...4,816,598
Ensembl chr20:4,786,929...4,815,985
JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO (PMID:16311053) RGD PMID:16311053 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4438316|PMID:19767743)
UniProt
RGD
PMID:19767743 GO_REF:0000024 MGI:4438316 NCBI chr 3:77,952,589...77,993,513
Ensembl chr 3:77,952,540...77,993,456
JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 involved_in ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 3:159,275,947...159,290,383
Ensembl chr 3:159,275,947...159,290,383
JBrowse link
G Dhh desert hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 7:130,050,910...130,056,406
Ensembl chr 7:130,050,910...130,056,406
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:3526402 (MGI:5780798|PMID:21308776) RGD PMID:21308776 MGI:5780798 NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522
JBrowse link
G Dlx5 distal-less homeobox 5 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:3522068|PMID:15383550)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15383550 GO_REF:0000024 GO_REF:0000107 MGI:3522068 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2183411|MGI:2385534 (MGI:3579968|PMID:15920156), (MGI:5297629|PMID:21930712) RGD PMID:15920156 PMID:21930712 MGI:3579968 MGI:5297629 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Epha2 Eph receptor A2 involved_in ISO (MGI:5284751|PMID:19299512) RGD PMID:19299512 MGI:5284751 NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fhl2 four and a half LIM domains 2 acts_upstream_of_or_within ISO (PMID:16311053) RGD PMID:16311053 NCBI chr 9:45,388,979...45,462,530
Ensembl chr 9:45,388,981...45,431,192
JBrowse link
G Fignl1 fidgetin-like 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4943395|PMID:17352653)
UniProt
RGD
PMID:17352653 GO_REF:0000024 MGI:4943395 NCBI chr14:86,368,670...86,381,728
Ensembl chr14:86,368,675...86,377,455
JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IMP RGD PMID:12054677 RGD:625463 NCBI chr20:1,464,534...1,494,114
Ensembl chr20:1,464,534...1,493,994
JBrowse link
G Gdf10 growth differentiation factor 10 involved_in IEP
IEA
GO_REF:0000002 InterPro
RGD
PMID:15994055 GO_REF:0000002, RGD:2316368 NCBI chr16:9,237,182...9,250,537
Ensembl chr16:9,237,261...9,249,343
JBrowse link
G Gdf2 growth differentiation factor 2 acts_upstream_of_or_within ISO MGI:1341800|MGI:96396|MGI:96397|MGI:96398 (MGI:3050935|PMID:15161906), (MGI:3836510|PMID:18986983) RGD PMID:15161906 PMID:18986983 MGI:3050935 MGI:3836510 NCBI chr16:9,255,430...9,261,429
Ensembl chr16:9,255,430...9,261,429
JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177|MGI:2445468|MGI:3776013 (MGI:2656409|PMID:12606326), (MGI:5311551|PMID:21934140) RGD PMID:12606326 PMID:21934140 MGI:2656409 MGI:5311551 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
G Gli1 GLI family zinc finger 1 involved_in ISO (PMID:12165851) RGD PMID:12165851 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
JBrowse link
G Gli2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
ISO (PMID:12165851)
MGI:1915509 (MGI:5431249|PMID:22771375)
RGD PMID:12165851 PMID:22771375 MGI:5431249 NCBI chr13:29,946,809...30,163,901
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Glis1 GLIS family zinc finger 1 involved_in ISO (MGI:6294234|PMID:30544251) RGD PMID:30544251 MGI:6294234 NCBI chr 5:122,222,155...122,412,141
Ensembl chr 5:122,222,128...122,412,141
JBrowse link
G Gpnmb glycoprotein nmb IEP RGD PMID:11746512 RGD:632991 NCBI chr 4:78,010,247...78,031,491
Ensembl chr 4:78,010,197...78,049,367
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768|MGI:1913653|MGI:99430 (MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:5430686 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686|MGI:1913653|MGI:99430 (MGI:5430686|PMID:22705305) RGD PMID:22705305 MGI:5430686 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G Hira histone cell cycle regulator acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1097686|MGI:1101768|MGI:3650546 (MGI:5430686|PMID:22705305)
GO_REF:0000107
RGD
Ensembl
PMID:22705305 GO_REF:0000107 MGI:5430686 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529
JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein acts_upstream_of_or_within ISO (MGI:4818501|PMID:20628571) RGD PMID:20628571 MGI:4818501 NCBI chr17:16,389,387...16,391,956
Ensembl chr17:16,389,387...16,392,470
JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3689350|MGI:5818514|MGI:95728 (MGI:5431249|PMID:22771375), (MGI:5807019|PMID:26996322) RGD PMID:22771375 PMID:26996322 MGI:5431249 MGI:5807019 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024
JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of_or_within ISO (PMID:16311053) RGD PMID:16311053 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Igf2 insulin-like growth factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16311053)
Ensembl
RGD
PMID:16311053 GO_REF:0000107 NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16311053)
Ensembl
RGD
PMID:16311053 GO_REF:0000107 NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 acts_upstream_of_or_within ISO (PMID:16311053) RGD PMID:16311053 NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1928765|MGI:1934258 (MGI:3036410|PMID:14973297), (MGI:5698232|PMID:25639508) RGD PMID:14973297 PMID:25639508 MGI:3036410 MGI:5698232 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Il18 interleukin 18 IEP RGD PMID:18165223 RGD:4889468 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176174|MGI:3036209 (MGI:3029146|PMID:14769860)
Ensembl
RGD
PMID:14769860 GO_REF:0000107 MGI:3029146 NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in ISO
IEA
(PMID:20128911)
GO_REF:0000107
RGD
Ensembl
PMID:20128911 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:4360132|PMID:19605502)
UniProt
RGD
PMID:19605502 GO_REF:0000024 MGI:4360132 NCBI chr 3:96,447,385...96,550,006
Ensembl chr 3:96,447,858...96,548,899
JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO MGI:3610732 (MGI:5603515|PMID:19458888) RGD PMID:19458888 MGI:5603515 NCBI chr18:45,964,311...46,041,477
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Lrrc17 leucine rich repeat containing 17 NOT|involved_in ISO (MGI:3850892|PMID:19336404) RGD PMID:19336404 MGI:3850892 NCBI chr 4:13,501,428...13,531,845
Ensembl chr 4:13,501,436...13,531,845
JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 involved_in ISO (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr10:95,373,304...95,490,406
Ensembl chr10:95,373,204...95,488,293
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in ISO (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 7:120,218,471...120,225,488
Ensembl chr 7:120,218,478...120,225,395
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO
GO_REF:0000107
MGI:3696052 (MGI:4829746|PMID:20551513)
Ensembl
RGD
PMID:20551513 GO_REF:0000107 MGI:4829746 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (MGI:3701381|PMID:17336904), (PMID:21652706) RGD PMID:17336904 PMID:21652706 MGI:3701381 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mef2d myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99458 (MGI:3701381|PMID:17336904)
Ensembl
RGD
PMID:17336904 GO_REF:0000107 MGI:3701381 NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEP RGD PMID:10528234 RGD:10043160 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Msx2 msh homeobox 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3522068|PMID:15383550)
UniProt
RGD
PMID:15383550 GO_REF:0000024 MGI:3522068 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Myoc myocilin involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5503270|PMID:23629661)
(PMID:23629661)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23629661 GO_REF:0000024 GO_REF:0000107 MGI:5503270 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:1857478 (MGI:3690406|PMID:16893911)
GO_REF:0000024
Ensembl
RGD
HGNC-UCL
PMID:16893911 GO_REF:0000024 GO_REF:0000107 MGI:3690406 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Nog noggin involved_in IEA
ISO
ISS
IBA
GO_REF:0000107
(MGI:3810620|PMID:10780858)
GO_REF:0000024
PMID:21873635
Ensembl
RGD
UniProt
PMID:10780858 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3810620, RGD:13792537 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Nr1i3 nuclear receptor subfamily 1, group I, member 3 IEP RGD PMID:19702932 RGD:9835391 NCBI chr13:83,632,940...83,638,193
Ensembl chr13:83,632,899...83,637,906
JBrowse link
G Pcp4 Purkinje cell protein 4 IEP RGD PMID:18008138 RGD:9850248 NCBI chr11:35,759,711...35,861,725
Ensembl chr11:35,800,713...35,861,725
JBrowse link
G Penk proenkephalin IEP RGD PMID:8584038 RGD:10003035 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in HDA PMID:16210410 UniProt PMID:16210410 RGD:8655526 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975
JBrowse link
G Rps11 ribosomal protein S11 involved_in HDA PMID:16210410 UniProt PMID:16210410 RGD:8655526 NCBI chr 1:95,605,690...95,607,798
Ensembl chr 1:95,605,692...95,607,874
JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO MGI:88177 (MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:3850932 NCBI chr 7:74,096,378...74,239,398
Ensembl chr 7:74,103,090...74,238,933
JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within
involved_in
IMP
ISO
MGI:1917649|MGI:2183833|MGI:88177 (MGI:3528197|PMID:15389629), (MGI:3528208|PMID:15565649), (MGI:3587162|PMID:16099986)
(PMID:20128911)
RGD PMID:15389629 PMID:15565649 PMID:16099986 PMID:20128911 PMID:19940863 MGI:3528197 MGI:3528208 MGI:3587162, RGD:12880052 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
IEP
ISO
GO_REF:0000107
PMID:16149051
(PMID:16149051)
Ensembl
RGD
PMID:16149051 PMID:16149051 GO_REF:0000107, RGD:4107087 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3626291 (MGI:3805084|PMID:18514492)
GO_REF:0000107
RGD
Ensembl
PMID:18514492 GO_REF:0000107 MGI:3805084 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:6209006|PMID:30026585)
UniProt
RGD
PMID:30026585 GO_REF:0000024 MGI:6209006 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Smad1 SMAD family member 1 involved_in ISO (MGI:6500778|PMID:7798324) RGD PMID:7798324 MGI:6500778 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (MGI:3654245|PMID:11585338) RGD PMID:11585338 MGI:3654245 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smad4 SMAD family member 4 IMP RGD PMID:19940863 RGD:12880052 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
MGI:2176256 (MGI:3036410|PMID:14973297)
GO_REF:0000107
RGD
Ensembl
PMID:14973297 PMID:19649528 GO_REF:0000107 MGI:3036410, RGD:2324984 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in ISO (PMID:20128911) RGD PMID:20128911 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:20128911) RGD PMID:20128911 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18187129) RGD PMID:18187129 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2154329 (MGI:3577129|PMID:15753123)
UniProt
RGD
PMID:15753123 GO_REF:0000024 MGI:3577129 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
JBrowse link
G Sp7 Sp7 transcription factor involved_in
acts_upstream_of_or_within
ISO (PMID:18932205)
MGI:2159411 (MGI:2158114|PMID:11792318)
RGD PMID:11792318 PMID:18932205 MGI:2158114 NCBI chr 7:133,484,609...133,494,788
Ensembl chr 7:133,484,609...133,494,847
JBrowse link
G Spp1 secreted phosphoprotein 1 involved_in IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:15598896 PMID:21873635 RGD:1581126, RGD:13792537 NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (MGI:5617089|PMID:25382630) RGD PMID:25382630 MGI:5617089 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
JBrowse link
G Tmem119 transmembrane protein 119 acts_upstream_of_or_within ISO (MGI:4946996|PMID:21239498) RGD PMID:21239498 MGI:4946996 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
JBrowse link
G Tmsb4x thymosin beta 4, X-linked IEP RGD PMID:2325669 RGD:729958 NCBI chr  X:27,144,677...27,146,667
Ensembl chr  X:27,128,610...27,146,667
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5314685|PMID:21467300)
Ensembl
RGD
PMID:21467300 GO_REF:0000107 MGI:5314685 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265|MGI:3038818 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:1922667|MGI:88177 (MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:3850932 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:88613 (MGI:3620470|PMID:16581771) RGD PMID:16581771 MGI:3620470 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
JBrowse link
G Wwox WW domain-containing oxidoreductase acts_upstream_of_or_within ISO MGI:3704944 (MGI:3804353|PMID:18487609) RGD PMID:18487609 MGI:3804353 NCBI chr19:42,432,141...43,360,278 JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 acts_upstream_of_or_within ISO MGI:88177 (MGI:3587162|PMID:16099986) RGD PMID:16099986 MGI:3587162 NCBI chr 2:141,651,159...141,766,919
Ensembl chr 2:141,648,108...141,766,968
JBrowse link
canonical Wnt signaling pathway involved in osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in ISO (PMID:24023731) RGD PMID:24023731 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Fzd1 frizzled class receptor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20039315)
Ensembl
RGD
PMID:20039315 GO_REF:0000107 NCBI chr 4:29,310,303...29,314,701 JBrowse link
G Wnt3 Wnt family member 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:20039315)
Ensembl
RGD
PMID:20039315 GO_REF:0000107 NCBI chr10:88,680,248...88,724,170
Ensembl chr10:88,680,248...88,724,099
JBrowse link
negative regulation of canonical Wnt signaling pathway involved in osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA
(PMID:24023731)
GO_REF:0000107
RGD
Ensembl
PMID:24023731 GO_REF:0000107 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Tnn tenascin N involved_in ISO (MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:3710297 NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
JBrowse link
negative regulation of osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor IDA RGD PMID:12193573 RGD:625678 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Areg amphiregulin IDA RGD PMID:15509566 RGD:1578718 NCBI chr14:16,972,185...16,981,443
Ensembl chr14:16,972,187...16,981,535
JBrowse link
G Axin2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3579503 (MGI:3578608|PMID:15790973)
Ensembl
RGD
PMID:15790973 GO_REF:0000107 MGI:3578608 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
G Bambi BMP and activin membrane-bound inhibitor acts_upstream_of ISO (PMID:21042576), (PMID:21743293) RGD PMID:21042576 PMID:21743293 NCBI chr17:54,121,251...54,125,816
Ensembl chr17:54,121,255...54,126,060
JBrowse link
G Cdk6 cyclin-dependent kinase 6 involved_in ISO (PMID:15254224) RGD PMID:15254224 NCBI chr 4:30,637,650...30,829,688
Ensembl chr 4:30,646,460...30,829,634
JBrowse link
G Chrd chordin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3577114|PMID:15780974)
(PMID:18533030)
Ensembl
RGD
PMID:15780974 PMID:18533030 GO_REF:0000107 MGI:3577114 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISO (MGI:4410428|PMID:18187554) RGD PMID:18187554 MGI:4410428 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Crim1 cysteine rich transmembrane BMP regulator 1 acts_upstream_of ISO (PMID:21042576), (PMID:21743293) RGD PMID:21042576 PMID:21743293 NCBI chr 6:16,695,864...16,870,264
Ensembl chr 6:16,697,829...16,870,259
JBrowse link
G Fgf23 fibroblast growth factor 23 involved_in ISO (PMID:18282132) RGD PMID:18282132 NCBI chr 4:159,914,393...159,922,073
Ensembl chr 4:159,914,272...159,923,821
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:18690792 RGD:2325179 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Fndc3b fibronectin type III domain containing 3B acts_upstream_of_or_within ISO MGI:4822558 (MGI:4818857|PMID:20493170) RGD PMID:20493170 MGI:4818857 NCBI chr 2:110,311,439...110,617,504
Ensembl chr 2:110,312,694...110,547,830
JBrowse link
G Gdf10 growth differentiation factor 10 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5545973|PMID:21712809)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21712809 GO_REF:0000024 GO_REF:0000107 MGI:5545973 NCBI chr16:9,237,182...9,250,537
Ensembl chr16:9,237,261...9,249,343
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within
ISO
ISS
IMP
(PMID:27036124)
GO_REF:0000024
PMID:27910957
RGD
UniProt
PMID:27036124 PMID:27910957 GO_REF:0000024, RGD:38501075 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2653307 (MGI:3830408|PMID:19144722)
Ensembl
RGD
PMID:19144722 GO_REF:0000107 MGI:3830408 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hdac4 histone deacetylase 4 acts_upstream_of_or_within ISO (MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:3584056 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
JBrowse link
G Hdac5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:3584056 NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
JBrowse link
G Hdac7 histone deacetylase 7 involved_in ISO
IEA
(PMID:17997710)
GO_REF:0000107
RGD
Ensembl
PMID:17997710 GO_REF:0000107 NCBI chr 7:128,923,918...128,962,025
Ensembl chr 7:128,923,920...128,962,072
JBrowse link
G Hdac8 histone deacetylase 8 IMP RGD PMID:25019367 RGD:13208813 NCBI chr  X:67,385,288...67,593,014
Ensembl chr  X:67,385,289...67,592,923
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4948784|PMID:21324897)
GO_REF:0000107
RGD
Ensembl
PMID:21324897 GO_REF:0000107 MGI:4948784
G Id1 inhibitor of DNA binding 1, HLH protein acts_upstream_of_or_within ISO MGI:1321394 (MGI:3050935|PMID:15161906) RGD PMID:15161906 MGI:3050935 NCBI chr 3:141,210,666...141,212,420
Ensembl chr 3:141,211,267...141,212,419
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:1321394 (MGI:3050908|PMID:15246553) RGD PMID:15246553 MGI:3050908 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
JBrowse link
G Id3 inhibitor of DNA binding 3, HLH protein acts_upstream_of_or_within ISO MGI:1321394 (MGI:3050935|PMID:15161906) RGD PMID:15161906 MGI:3050935 NCBI chr 5:148,372,784...148,374,353
Ensembl chr 5:148,372,762...148,374,349
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 acts_upstream_of_or_within ISO MGI:87986|MGI:88177 (MGI:3837587|PMID:19208758) RGD PMID:19208758 MGI:3837587 NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156
JBrowse link
G Limd1 LIM domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3807091|PMID:18657804)
UniProt
RGD
PMID:18657804 GO_REF:0000024 MGI:3807091 NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:17680723) RGD PMID:17680723 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:96648 (MGI:3056877|PMID:15150273), (MGI:3573815|PMID:15563473)
MGI:1316736 (PMID:15563473)
RGD PMID:15150273 PMID:15563473 MGI:3056877 MGI:3573815 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Mir125a microRNA 125a IMP RGD PMID:29319166 RGD:26884461 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710
JBrowse link
G Mir133a1 microRNA 133a-1 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr18:1,885,082...1,885,168 JBrowse link
G Mir137 microRNA 137 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985
JBrowse link
G Mir204 microRNA 204 acts_upstream_of_or_within IMP
ISO
(MGI:5013854|PMID:21628588) RGD PMID:21628588 PMID:29319166 MGI:5013854, RGD:26884461 NCBI chr 1:220,316,931...220,317,040
Ensembl chr 1:220,316,931...220,317,040
JBrowse link
G Mir205 microRNA 205 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr13:105,035,878...105,035,985
Ensembl chr13:105,035,878...105,035,985
JBrowse link
G Mir217 microRNA 217 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr14:102,531,505...102,531,609
Ensembl chr14:102,531,505...102,531,609
JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
JBrowse link
G Mir30c1 microRNA 30c-1 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr 5:134,349,237...134,349,325
Ensembl chr 5:134,349,237...134,349,325
JBrowse link
G Mir30c2 microRNA 30c-2 acts_upstream_of_or_within ISO (MGI:5013854|PMID:21628588) RGD PMID:21628588 MGI:5013854 NCBI chr 9:25,757,342...25,757,425
Ensembl chr 9:25,757,342...25,757,425
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor involved_in IEA
ISO
GO_REF:0000107
(MGI:4818844|PMID:20616007)
Ensembl
RGD
PMID:20616007 GO_REF:0000107 MGI:4818844 NCBI chr10:86,477,775...86,506,418
Ensembl chr10:86,478,290...86,506,412
JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 acts_upstream_of_or_within ISO (MGI:4398991|PMID:19463978) RGD PMID:19463978 MGI:4398991 NCBI chr18:74,046,421...74,156,041
Ensembl chr18:74,046,904...74,156,028
JBrowse link
G Noct nocturnin involved_in ISS
ISO
GO_REF:0000024
(MGI:4457955|PMID:20498072)
UniProt
RGD
PMID:20498072 GO_REF:0000024 MGI:4457955 NCBI chr 2:135,271,189...135,291,407
Ensembl chr 2:135,271,189...135,291,400
JBrowse link
G Nog noggin involved_in IEA
ISO
GO_REF:0000107
(PMID:20675382)
Ensembl
RGD
PMID:20675382 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:4412151|PMID:19695258) RGD PMID:19695258 MGI:4412151 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Ostn osteocrin acts_upstream_of_or_within ISO (MGI:2683819|PMID:14523025) RGD PMID:14523025 MGI:2683819 NCBI chr11:73,442,167...73,478,577
Ensembl chr11:73,442,487...73,468,603
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma acts_upstream_of ISO (PMID:21042576), (PMID:21743293) RGD PMID:21042576 PMID:21743293 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:16229683) RGD PMID:16229683 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
G Ranbp3l RAN binding protein 3-like involved_in ISO (MGI:5883200|PMID:25755279) RGD PMID:25755279 MGI:5883200 NCBI chr 2:58,057,887...58,113,158
Ensembl chr 2:58,058,263...58,113,172
JBrowse link
G Riox1 ribosomal oxygenase 1 involved_in ISO (MGI:4418587|PMID:19927124) RGD PMID:19927124 MGI:4418587 NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
JBrowse link
G Rorb RAR-related orphan receptor B involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5554363|PMID:22189870)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22189870 GO_REF:0000024 GO_REF:0000107 MGI:5554363 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Sema4d semaphorin 4D involved_in ISO (MGI:5297297|PMID:22019888) RGD PMID:22019888 MGI:5297297 NCBI chr17:13,430,324...13,537,146
Ensembl chr17:13,430,379...13,537,138
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3045799 (MGI:3040721|PMID:14976225)
Ensembl
RGD
PMID:14976225 GO_REF:0000107 MGI:3040721 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Ski SKI proto-oncogene involved_in ISO (PMID:14699069) RGD PMID:14699069 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:1316736 (MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:3056877 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:22275001) RGD PMID:22275001 NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3577701|PMID:15781477) RGD PMID:15781477 MGI:3577701 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:5317468|PMID:22421045), (MGI:6323929|PMID:31121357), (MGI:6414737|PMID:32103177)
UniProt
RGD
PMID:22421045 PMID:31121357 PMID:32103177 GO_REF:0000024 MGI:5317468 MGI:6323929 MGI:6414737 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tmem64 transmembrane protein 64 involved_in ISO (MGI:5643786|PMID:25979161) RGD PMID:25979161 MGI:5643786 NCBI chr 5:28,698,947...28,745,384
Ensembl chr 5:28,698,918...28,745,330
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (MGI:5285024|PMID:21689636) RGD PMID:21689636 MGI:5285024 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tnfaip6 TNF alpha induced protein 6 involved_in ISO
IEA
(PMID:16771708), (PMID:18586671)
GO_REF:0000107
RGD
Ensembl
PMID:16771708 PMID:18586671 GO_REF:0000107 NCBI chr 3:36,502,250...36,521,652
Ensembl chr 3:36,502,188...36,521,649
JBrowse link
G Tnn tenascin N involved_in ISO (MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:3710297 NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1933294 (MGI:1928565|PMID:11163184)
Ensembl
RGD
PMID:11163184 GO_REF:0000107 MGI:1928565 NCBI chr10:79,163,093...79,165,131
Ensembl chr10:79,160,154...79,165,215
JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 IMP RGD PMID:23081848 RGD:10003033 NCBI chr 1:95,781,805...95,812,095
Ensembl chr 1:95,782,000...95,812,532
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:16888803)
(MGI:3042355|PMID:15030764)
RGD PMID:15030764 PMID:16888803 MGI:3042355 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Twist2 twist family bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:11062344)
MGI:3044412 (MGI:3042355|PMID:15030764)
GO_REF:0000024
RGD
UniProt
PMID:11062344 PMID:15030764 GO_REF:0000024 MGI:3042355 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO (MGI:3577114|PMID:15780974) RGD PMID:15780974 MGI:3577114 NCBI chr 9:105,533,116...105,567,525
Ensembl chr 9:105,533,136...105,567,479
JBrowse link
G Ucma upper zone of growth plate and cartilage matrix associated acts_upstream_of_or_within ISO (MGI:3784758|PMID:18156182) RGD PMID:18156182 MGI:3784758 NCBI chr17:73,293,977...73,303,728
Ensembl chr17:73,293,978...73,303,611
JBrowse link
G Vegfc vascular endothelial growth factor C involved_in ISO (MGI:6378108|PMID:26934950) RGD PMID:26934950 MGI:6378108 NCBI chr16:37,712,408...37,827,657
Ensembl chr16:37,712,262...37,827,848
JBrowse link
osteoblast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07071701.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ache acetylcholinesterase involved_in ISO
IEA
(PMID:15454088)
GO_REF:0000107
RGD
Ensembl
PMID:15454088 GO_REF:0000107 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEP RGD PMID:20020468 RGD:2316141 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha IEP RGD PMID:1377818 RGD:69946 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Clec5a C-type lectin domain containing 5A involved_in ISO (MGI:3839503|PMID:19251634) RGD PMID:19251634 MGI:3839503 NCBI chr 4:69,407,125...69,416,872
Ensembl chr 4:69,407,835...69,416,859
JBrowse link
G Esr1 estrogen receptor 1 IEP RGD PMID:9528993 RGD:2313676 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3653954|PMID:16880529) RGD PMID:16880529 MGI:3653954 NCBI chr13:29,946,809...30,163,901
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Hdac4 histone deacetylase 4 acts_upstream_of_or_within ISO (MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:3584056 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
JBrowse link
G Hdac5 histone deacetylase 5 acts_upstream_of_or_within ISO (MGI:3584056|PMID:15990875) RGD PMID:15990875 MGI:3584056 NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:99829 (MGI:3836510|PMID:18986983) RGD PMID:18986983 MGI:3836510 NCBI chr 2:93,096,706...93,100,316
Ensembl chr 2:93,095,498...93,100,312
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2679336 (MGI:3692344|PMID:16751105)
GO_REF:0000107
RGD
Ensembl
PMID:16751105 GO_REF:0000107 MGI:3692344
G Jund JunD proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:1316736 (MGI:3573815|PMID:15563473) RGD PMID:15563473 MGI:3573815 NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799
JBrowse link
G Limd1 LIM domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3698661|PMID:17092936), (MGI:3807091|PMID:18657804)
UniProt
RGD
PMID:17092936 PMID:18657804 GO_REF:0000024 MGI:3698661 MGI:3807091 NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
JBrowse link
G LOC102554748 nidogen-2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Lrp5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4835143|PMID:17700537)
MGI:3612485 (MGI:3694400|PMID:16790443)
RGD PMID:16790443 PMID:17700537 PMID:21873635 MGI:3694400 MGI:4835143, RGD:13792537 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:1201674|MGI:96648 (MGI:3056877|PMID:15150273), (MGI:3573815|PMID:15563473)
MGI:1316736 (PMID:15563473)
RGD PMID:15150273 PMID:15563473 MGI:3056877 MGI:3573815 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
MGI:1926381 (MGI:1355063|PMID:10742104)
GO_REF:0000107
RGD
Ensembl
PMID:10742104 PMID:11336915 GO_REF:0000107 MGI:1355063, RGD:5132630 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Pth1r parathyroid hormone 1 receptor acts_upstream_of_or_within ISO MGI:2154519 (MGI:3624906|PMID:9832460) RGD PMID:9832460 MGI:3624906 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729
JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within
involved_in
TAS
ISO
IBA
MGI:2154515 (MGI:3624906|PMID:9832460)
PMID:21873635
RGD PMID:9832460 PMID:12706025 PMID:21873635 MGI:3624906, RGD:1601570, RGD:13792537 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1341800 (MGI:3836510|PMID:18986983)
Ensembl
RGD
PMID:18986983 GO_REF:0000107 MGI:3836510 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768|MGI:96174 (MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:3692344 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3653954|PMID:16880529)
Ensembl
RGD
PMID:16880529 GO_REF:0000107 MGI:3653954 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:1316736 (MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:3056877 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Tnn tenascin N involved_in ISO (MGI:3710297|PMID:17395156) RGD PMID:17395156 MGI:3710297 NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
JBrowse link
osteoblast fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:109452|MGI:1328787|MGI:99829 (MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:3056877 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1316736 (MGI:3056877|PMID:15150273)
Ensembl
RGD
PMID:15150273 GO_REF:0000107 MGI:3056877 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (MGI:5800302|PMID:27711054) RGD PMID:27711054 MGI:5800302 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1316736 (MGI:3056877|PMID:15150273)
Ensembl
RGD
PMID:15150273 GO_REF:0000107 MGI:3056877 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:1316736 (MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:3056877 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
JBrowse link
positive regulation of osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
JBrowse link
G Acvr2a activin A receptor type 2A involved_in ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968
JBrowse link
G Acvr2b activin A receptor type 2B involved_in ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
JBrowse link
G Atp6ap1 ATPase H+ transporting accessory protein 1 involved_in ISS
IEA
GO_REF:0000024
GO_REF:0000107
CAFA
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr  X:152,079,954...152,087,034
Ensembl chr  X:152,079,865...152,087,034
JBrowse link
G Atraid all-trans retinoic acid-induced differentiation factor involved_in ISO
IBA
(PMID:21723284)
PMID:21873635
RGD PMID:21723284 PMID:21873635 RGD:13792537 NCBI chr 6:25,315,236...25,319,804 JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:15254224), (PMID:16433617), (PMID:18436533), (PMID:20576608)
(MGI:3050916|PMID:15175325), (MGI:3587162|PMID:16099986)
(MGI:5009350|PMID:20675382)
GO_REF:0000024
RGD
UniProt
PMID:15175325 PMID:15254224 PMID:16099986 PMID:16433617 PMID:18436533 More... GO_REF:0000024 MGI:3050916 MGI:3587162 MGI:5009350 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
IMP
ISO
ISS
IEA
IDA
(PMID:14749725)
(PMID:18436533)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:14749725 PMID:18436533 PMID:17112416 PMID:16245174 GO_REF:0000024 GO_REF:0000107, RGD:1643600, RGD:2289011 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IMP
ISO
(PMID:18436533) RGD PMID:18436533 PMID:9202223 RGD:2289027 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (PMID:18436533) RGD PMID:18436533 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Ccn1 cellular communication network factor 1 involved_in ISO
IEA
(PMID:20675382)
GO_REF:0000107
RGD
Ensembl
PMID:20675382 GO_REF:0000107 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Ccn4 cellular communication network factor 4 involved_in ISO
IEA
(PMID:20684029)
GO_REF:0000107
RGD
Ensembl
PMID:20684029 GO_REF:0000107 NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248
JBrowse link
G Cd276 Cd276 molecule acts_upstream_of_or_within ISO MGI:3033707 (MGI:3052626|PMID:15317945) RGD PMID:15317945 MGI:3052626 NCBI chr 8:58,937,751...58,968,082
Ensembl chr 8:58,937,751...58,968,380
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3050916|PMID:15175325)
Ensembl
RGD
PMID:15175325 GO_REF:0000107 MGI:3050916 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta acts_upstream_of_or_within ISO (MGI:3050916|PMID:15175325) RGD PMID:15175325 MGI:3050916 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
JBrowse link
G Cebpd CCAAT/enhancer binding protein delta acts_upstream_of_or_within ISO (MGI:3050916|PMID:15175325) RGD PMID:15175325 MGI:3050916 NCBI chr11:84,764,670...84,765,808
Ensembl chr11:84,764,565...84,765,829
JBrowse link
G Clic1 chloride intracellular channel 1 acts_upstream_of_or_within ISO (MGI:4410403|PMID:19703605) RGD PMID:19703605 MGI:4410403 NCBI chr20:3,764,867...3,773,711
Ensembl chr20:3,761,461...3,773,712
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO MGI:3830252 (MGI:3829514|PMID:18779865) RGD PMID:18779865 MGI:3829514 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148591|MGI:2148594|MGI:2450929 (MGI:3578464|PMID:15866163)
Ensembl
RGD
PMID:15866163 GO_REF:0000107 MGI:3578464 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 involved_in ISO (PMID:18977368) RGD PMID:18977368 NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (PMID:20564243) RGD PMID:20564243 NCBI chr13:82,193,623...82,318,229
Ensembl chr13:82,195,463...82,317,363
JBrowse link
G Dlx5 distal-less homeobox 5 IMP RGD PMID:12815054 RGD:1298882 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 involved_in ISO (MGI:6450489|PMID:25498833) RGD PMID:25498833 MGI:6450489 NCBI chr 2:234,947,910...235,006,173
Ensembl chr 2:234,929,677...235,006,173
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase acts_upstream_of_or_within ISO (MGI:5427766|PMID:22615579) RGD PMID:22615579 MGI:5427766 NCBI chr12:15,826,864...15,885,423
Ensembl chr12:15,826,871...15,884,543
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:4836762 NCBI chr18:51,499,737...51,703,976
Ensembl chr18:51,499,737...51,703,976
JBrowse link
G Fbxo5 F-box protein 5 involved_in ISO (PMID:29850565) RGD PMID:29850565 NCBI chr 1:42,196,068...42,202,437
Ensembl chr 1:42,196,068...42,202,437
JBrowse link
G Fermt2 FERM domain containing kindlin 2 involved_in ISO (PMID:29496737)
(MGI:6149626|PMID:29496737)
RGD PMID:29496737 MGI:6149626 NCBI chr15:18,682,927...18,751,959
Ensembl chr15:18,682,927...18,751,811
JBrowse link
G Ffar4 free fatty acid receptor 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:6220333|PMID:26365922)
UniProt
RGD
PMID:26365922 GO_REF:0000024 MGI:6220333 NCBI chr 1:235,873,576...235,891,597
Ensembl chr 1:235,873,576...235,891,597
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO MGI:95729 (MGI:4821204|PMID:20570969) RGD PMID:20570969 MGI:4821204 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Gdf10 growth differentiation factor 10 IDA RGD PMID:12559390 RGD:2316372 NCBI chr16:9,237,182...9,250,537
Ensembl chr16:9,237,261...9,249,343
JBrowse link
G Gdpd2 glycerophosphodiester phosphodiesterase domain containing 2 acts_upstream_of_or_within ISO (MGI:2679742|PMID:12933806) RGD PMID:12933806 MGI:2679742 NCBI chr  X:65,826,273...65,835,361
Ensembl chr  X:65,826,574...65,835,361
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276|MGI:95516 (MGI:4821204|PMID:20570969) RGD PMID:20570969 MGI:4821204 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:1321394|MGI:99829 (MGI:3836510|PMID:18986983) RGD PMID:18986983 MGI:3836510 NCBI chr 2:93,096,706...93,100,316
Ensembl chr 2:93,095,498...93,100,312
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 involved_in ISO (PMID:22634173) RGD PMID:22634173 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in IDA
IEA
ISO
GO_REF:0000107
(PMID:16433617)
Ensembl
RGD
PMID:16433617 PMID:16897348 GO_REF:0000107, RGD:1598452 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:30545407) RGD PMID:30545407 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in IEA
ISO
GO_REF:0000107
(PMID:12372336)
Ensembl
RGD
PMID:12372336 GO_REF:0000107 NCBI chr 2:44,065,979...44,106,255
Ensembl chr 2:44,066,130...44,109,936
JBrowse link
G Ilk integrin-linked kinase involved_in ISO (MGI:5009350|PMID:20675382) RGD PMID:20675382 MGI:5009350 NCBI chr 1:160,088,839...160,095,140
Ensembl chr 1:160,088,897...160,095,140
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5522615|PMID:23980096)
Ensembl
RGD
PMID:23980096 GO_REF:0000107 MGI:5522615 NCBI chr 3:124,406,794...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:1316736 (MGI:3573815|PMID:15563473) RGD PMID:15563473 MGI:3573815 NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799
JBrowse link
G Lmna lamin A/C IMP RGD PMID:22119912 RGD:10003161 NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423
JBrowse link
G Lrp3 LDL receptor related protein 3 involved_in ISO (PMID:28340487) RGD PMID:28340487 NCBI chr 1:87,843,815...87,859,147
Ensembl chr 1:87,844,868...87,859,110
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (MGI:6162346|PMID:26891291) RGD PMID:26891291 MGI:6162346 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:5285459|PMID:21652706)
UniProt
RGD
PMID:21652706 GO_REF:0000024 MGI:5285459 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:88177 (MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:3056877 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Mir210 microRNA 210 acts_upstream_of_or_within ISO (MGI:3851892|PMID:19520079) RGD PMID:19520079 MGI:3851892 NCBI chr 1:196,326,343...196,326,452 JBrowse link
G Mnda myeloid cell nuclear differentiation antigen acts_upstream_of_or_within ISO MGI:88177 (MGI:3530710|PMID:15557274) RGD PMID:15557274 MGI:3530710 NCBI chr13:86,017,888...86,035,556
Ensembl chr13:86,017,892...86,034,201
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3050916|PMID:15175325)
Ensembl
RGD
PMID:15175325 GO_REF:0000107 MGI:3050916 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Nell1 neural EGFL like 1 involved_in ISO
IEA
ISS
(PMID:21723284)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21723284 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:99,709,305...100,573,872
Ensembl chr 1:99,709,793...100,573,860
JBrowse link
G Npnt nephronectin involved_in ISO (MGI:4414689|PMID:19944102), (MGI:5285024|PMID:21689636) RGD PMID:19944102 PMID:21689636 MGI:4414689 MGI:5285024 NCBI chr 2:221,391,151...221,459,527
Ensembl chr 2:221,391,153...221,459,401
JBrowse link
G Nppc natriuretic peptide C IDA RGD PMID:17562543 RGD:1642298 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251
JBrowse link
G Pdlim7 PDZ and LIM domain 7 IDA RGD PMID:9832452 RGD:632731 NCBI chr17:9,124,565...9,139,814
Ensembl chr17:9,124,649...9,139,811
JBrowse link
G Prkd1 protein kinase D1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5306577|PMID:19029091)
UniProt
RGD
PMID:19029091 GO_REF:0000024 MGI:5306577 NCBI chr 6:67,725,193...68,039,002
Ensembl chr 6:67,725,905...68,039,042
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:14751573 RGD:10043372 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:1316736|MGI:1341800 (MGI:3050916|PMID:15175325), (MGI:3056877|PMID:15150273), (MGI:3836510|PMID:18986983)
(PMID:28703881)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15150273 PMID:15175325 PMID:18986983 PMID:28703881 GO_REF:0000024 GO_REF:0000107 MGI:3050916 MGI:3056877 MGI:3836510 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367|MGI:96533 (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393
JBrowse link
G Scube3 signal peptide, CUB domain and EGF like domain containing 3 involved_in ISO (PMID:33308444)
(MGI:6716484|PMID:33308444)
RGD PMID:33308444 MGI:6716484 NCBI chr20:6,199,182...6,231,100
Ensembl chr20:6,199,182...6,228,584
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:98956 (MGI:3772759|PMID:18166153) RGD PMID:18166153 MGI:3772759 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1316736 (MGI:3056877|PMID:15150273)
Ensembl
RGD
PMID:15150273 GO_REF:0000107 MGI:3056877 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:1316736 (MGI:3056877|PMID:15150273) RGD PMID:15150273 MGI:3056877 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(PMID:20626275)
UniProt
RGD
PMID:20626275 GO_REF:0000024 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Suco SUN domain containing ossification factor involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4452525|PMID:20440000)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20440000 GO_REF:0000024 GO_REF:0000107 MGI:4452525 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896
JBrowse link
G Tent5a terminal nucleotidyltransferase 5A involved_in IEA
ISO
GO_REF:0000107
(MGI:6717031|PMID:33882302)
Ensembl
RGD
PMID:33882302 GO_REF:0000107 MGI:6717031 NCBI chr 8:86,222,294...86,229,045
Ensembl chr 8:86,225,357...86,229,045
JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO
IBA
(PMID:20025746)
(MGI:4418582|PMID:20025746), (MGI:5543589|PMID:22416756), (MGI:6294241|PMID:22579779)
PMID:21873635
RGD PMID:20025746 PMID:22416756 PMID:22579779 PMID:21873635 MGI:4418582 MGI:5543589 MGI:6294241, RGD:13792537 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
JBrowse link
G Tp63 tumor protein p63 involved_in ISO (PMID:22521434) RGD PMID:22521434 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048 (MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:5461755 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (MGI:3574150|PMID:15728361), (MGI:4358631|PMID:19723499) RGD PMID:15728361 PMID:19723499 MGI:3574150 MGI:4358631 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO
IEA
(PMID:17720811)
GO_REF:0000107
RGD
Ensembl
PMID:17720811 GO_REF:0000107 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO (MGI:3511731|PMID:15576404) RGD PMID:15576404 MGI:3511731 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 involved_in ISO UniProtKB:Q96AC1 (PMID:29496737) RGD PMID:29496737 NCBI chr 2:141,651,159...141,766,919
Ensembl chr 2:141,648,108...141,766,968
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO (PMID:29496737) RGD PMID:29496737 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
G Zhx3 zinc fingers and homeoboxes 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:21174497)
UniProt
RGD
PMID:21174497 GO_REF:0000024 NCBI chr 3:149,417,843...149,548,671
Ensembl chr 3:149,417,818...149,527,079
JBrowse link
regulation of osteoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1857966 (MGI:3584206|PMID:15802266) RGD PMID:15802266 MGI:3584206 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:3040115|PMID:15109498)
(PMID:15109498)
UniProt
RGD
PMID:15109498 GO_REF:0000024 MGI:3040115 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO MGI:2148567|MGI:3044412 (MGI:3511731|PMID:15576404), (MGI:3584206|PMID:15802266) RGD PMID:15576404 PMID:15802266 MGI:3511731 MGI:3584206 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (MGI:5315698|PMID:17960593) RGD PMID:17960593 MGI:5315698 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:11381083 RGD:1625633 NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268
JBrowse link
G Fzd1 frizzled class receptor 1 IEP RGD PMID:1334084 RGD:61590 NCBI chr 4:29,310,303...29,314,701 JBrowse link
G Gli1 GLI family zinc finger 1 involved_in ISO (MGI:5429486|PMID:22493482) RGD PMID:22493482 MGI:5429486 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta IMP RGD PMID:28731198 RGD:13792731 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hemgn hemogen involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11161722 PMID:21873635 RGD:632552, RGD:13792537 NCBI chr 5:60,679,633...60,698,597
Ensembl chr 5:60,679,633...60,698,669
JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within ISO (MGI:5643971|PMID:25751060) RGD PMID:25751060 MGI:5643971 NCBI chr  X:15,247,715...15,247,794
Ensembl chr  X:15,247,715...15,247,794
JBrowse link
G Nell1 neural EGFL like 1 IMP RGD PMID:12235118 RGD:633405 NCBI chr 1:99,709,305...100,573,872
Ensembl chr 1:99,709,793...100,573,860
JBrowse link
G Pias2 protein inhibitor of activated STAT, 2 acts_upstream_of_or_within ISO (MGI:3723333|PMID:17623776) RGD PMID:17623776 MGI:3723333 NCBI chr18:70,608,034...70,714,295
Ensembl chr18:70,607,665...70,710,033
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:19949837)
Ensembl
RGD
PMID:19949837 GO_REF:0000107 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
JBrowse link
G Ptk2 protein tyrosine kinase 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:16927379)
UniProt
Ensembl
RGD
PMID:16927379 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:105,126,725...105,331,848
Ensembl chr 7:105,126,728...105,331,783
JBrowse link
G Rassf2 Ras association domain family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5314787 (MGI:5314467|PMID:22227519)
Ensembl
RGD
PMID:22227519 GO_REF:0000107 MGI:5314467 NCBI chr 3:119,244,288...119,280,462
Ensembl chr 3:119,245,821...119,280,431
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:5641106|PMID:25838543)
UniProt
RGD
PMID:25838543 GO_REF:0000024 MGI:5641106 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within TAS
ISO
(MGI:5013854|PMID:21628588) RGD PMID:21628588 PMID:9651525 MGI:5013854, RGD:69800 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO (PMID:20359165) RGD PMID:20359165 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:19756381), (PMID:21182836) RGD PMID:19756381 PMID:21182836 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:1856973 (MGI:5315781|PMID:22351931) RGD PMID:22351931 MGI:5315781 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19541
    multicellular organismal process 9044
      ossification 443
        osteoblast differentiation 234
          canonical Wnt signaling pathway involved in osteoblast differentiation + 5
          negative regulation of osteoblast differentiation 64
          osteoblast development 25
          osteoblast fate commitment 5
          positive regulation of osteoblast differentiation 76
          regulation of osteoblast differentiation + 154
Path 2
Term Annotations click to browse term
  biological_process 19541
    cellular process 18407
      cellular developmental process 4576
        cell differentiation 4481
          osteoblast differentiation 234
            canonical Wnt signaling pathway involved in osteoblast differentiation + 5
            negative regulation of osteoblast differentiation 64
            osteoblast development 25
            osteoblast fate commitment 5
            positive regulation of osteoblast differentiation 76
            regulation of osteoblast differentiation + 154
paths to the root