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ONTOLOGY REPORT - ANNOTATIONS


Term:lipopolysaccharide binding
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Accession:GO:0001530 term browser browse the term
Definition:Binding to a lipopolysaccharide.
Synonyms:exact_synonym: LPS binding
 broad_synonym: endotoxin binding



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lipopolysaccharide binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 enables ISO (MGI:4939876|PMID:21245295) RGD PMID:21245295 MGI:4939876 NCBI chr 7:106,404,844...106,476,902
Ensembl chr 7:106,404,958...106,476,902
JBrowse link
G Bpi bactericidal/permeability-increasing protein enables IDA
IBA
ISO
PMID:21873635
(PMID:8409400)
RGD PMID:8409400 PMID:15009116 PMID:21873635 RGD:1303979, RGD:13792537 NCBI chr 3:146,909,626...146,936,487
Ensembl chr 3:146,909,629...146,936,221
JBrowse link
G Bpifa2 BPI fold containing family A, member 2 enables ISO
IBA
(PMID:21833535)
PMID:21873635
RGD PMID:21833535 PMID:21873635 RGD:13792537 NCBI chr 3:142,493,379...142,501,343
Ensembl chr 3:142,493,379...142,501,337
JBrowse link
G Bpifa2f BPI fold containing family A, member 2F enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:142,521,255...142,533,462
Ensembl chr 3:142,524,881...142,533,462
JBrowse link
G Camp cathelicidin antimicrobial peptide enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:109,841,729...109,843,543
Ensembl chr 8:109,841,729...109,843,543
JBrowse link
G Cd14 CD14 molecule enables IBA
ISO
PMID:21873635
(PMID:12594207)
RGD PMID:12594207 PMID:21873635 RGD:13792537 NCBI chr18:28,335,522...28,337,383
Ensembl chr18:28,335,340...28,337,261
JBrowse link
G Cd6 Cd6 molecule enables ISO (PMID:17601777) RGD PMID:17601777 NCBI chr 1:207,442,873...207,481,703
Ensembl chr 1:207,442,877...207,481,634
JBrowse link
G Defb15 defensin beta 15 enables ISO (PMID:24189797) RGD PMID:24189797 NCBI chr16:70,141,193...70,143,834
Ensembl chr16:70,141,193...70,143,834
JBrowse link
G Defb21 defensin beta 21 enables ISO (PMID:33181266) RGD PMID:33181266 NCBI chr 3:141,042,844...141,044,159
Ensembl chr 3:141,042,810...141,044,184
JBrowse link
G Defb24 defensin beta 24 enables ISO (PMID:24449502) RGD PMID:24449502 NCBI chr 3:141,046,571...141,052,706
Ensembl chr 3:141,046,564...141,052,753
JBrowse link
G Defb44 defensin beta 44 enables ISO (PMID:34481960) RGD PMID:34481960 NCBI chr15:37,312,308...37,313,370
Ensembl chr15:37,312,308...37,313,370
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 enables ISO (PMID:19189310) RGD PMID:19189310 NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478
JBrowse link
G Drosha drosha ribonuclease III enables ISO (PMID:20180804) RGD PMID:20180804 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688
JBrowse link
G F2 coagulation factor II enables ISO
IEA
(PMID:20421939)
GO_REF:0000107
RGD
Ensembl
PMID:20421939 GO_REF:0000107 NCBI chr 3:77,596,196...77,609,486
Ensembl chr 3:77,596,198...77,609,486
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E enables ISO (PMID:11859126) RGD PMID:11859126 NCBI chr 2:183,780,449...183,783,030 JBrowse link
G Hmgb1 high mobility group box 1 enables ISO (PMID:21660935) RGD PMID:21660935 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 enables ISO (PMID:17164250)
(MGI:3708392|PMID:17164250)
RGD PMID:17164250 MGI:3708392 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
G Lbp lipopolysaccharide binding protein enables IDA
IEA
ISO
IBA
GO_REF:0000002
(PMID:12594207), (PMID:24120359)
(MGI:1926636|PMID:11079463)
PMID:21873635
InterPro
RGD
PMID:11079463 PMID:12594207 PMID:24120359 PMID:22580761 PMID:21873635 GO_REF:0000002 MGI:1926636, RGD:9685189, RGD:13792537 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
JBrowse link
G Ltf lactotransferrin enables ISO (PMID:9596699)
(PMID:15155221)
RGD PMID:9596699 PMID:15155221 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
JBrowse link
G Ly96 lymphocyte antigen 96 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386
JBrowse link
G Ninj1 ninjurin 1 enables ISS
ISO
GO_REF:0000024
(MGI:6695680|PMID:26677008)
(PMID:26677008)
UniProt
RGD
PMID:26677008 GO_REF:0000024 MGI:6695680 NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704
JBrowse link
G Nlrp6 NLR family, pyrin domain containing 6 enables ISS
ISO
GO_REF:0000024
(PMID:31932628)
UniProt
RGD
PMID:31932628 GO_REF:0000024 NCBI chr 1:196,004,854...196,011,615
Ensembl chr 1:196,004,953...196,011,113
JBrowse link
G P2rx7 purinergic receptor P2X 7 enables ISO (MGI:2148354|PMID:11489964) RGD PMID:11489964 MGI:2148354 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Psma1 proteasome 20S subunit alpha 1 enables ISO (MGI:4419084|PMID:12874245) RGD PMID:12874245 MGI:4419084 NCBI chr 1:168,442,421...168,453,440
Ensembl chr 1:168,440,936...168,453,472
JBrowse link
G Psmb4 proteasome 20S subunit beta 4 enables ISO (MGI:4419084|PMID:12874245) RGD PMID:12874245 MGI:4419084 NCBI chr 2:182,442,757...182,445,532
Ensembl chr 2:182,442,756...182,445,746
JBrowse link
G Ptafr platelet-activating factor receptor enables ISO (MGI:85738|PMID:9013981) RGD PMID:9013981 MGI:85738 NCBI chr 5:144,765,770...144,795,057
Ensembl chr 5:144,765,976...144,795,251
JBrowse link
G Rnase2 ribonuclease A family member 2 NOT|enables ISO (PMID:23992292) RGD PMID:23992292 NCBI chr15:24,449,618...24,450,427
Ensembl chr15:24,449,611...24,450,479
JBrowse link
G Rnase3 ribonuclease A family member 3 enables ISO (PMID:23992292) RGD PMID:23992292 NCBI chr15:24,511,894...24,512,764
Ensembl chr15:24,511,891...24,512,790
JBrowse link
G Scarb1 scavenger receptor class B, member 1 enables ISO (PMID:12651854) RGD PMID:12651854 NCBI chr12:31,296,143...31,362,649
Ensembl chr12:31,296,156...31,362,647
JBrowse link
G Selp selectin P enables IEA
ISO
GO_REF:0000107
(PMID:16514062)
Ensembl
RGD
PMID:16514062 GO_REF:0000107 NCBI chr13:76,476,229...76,511,846
Ensembl chr13:76,476,295...76,511,845
JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:18092821 RGD:4143524 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927
JBrowse link
G Spon2 spondin 2 enables ISO (MGI:2686801|PMID:14691481) RGD PMID:14691481 MGI:2686801 NCBI chr14:77,505,695...77,518,001
Ensembl chr14:77,511,901...77,517,996
JBrowse link
G Tlr2 toll-like receptor 2 enables ISO (PMID:11274165) RGD PMID:11274165 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Tlr4 toll-like receptor 4 enables IDA
IBA
ISO
IEA
E. coli K12 LPS
PMID:21873635
(PMID:16514062)
GO_REF:0000107
RGD
Ensembl
PMID:16514062 PMID:16973131 PMID:21873635 GO_REF:0000107, RGD:1643119, RGD:13792537 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 enables ISO (MGI:5463560|PMID:19079182), (MGI:5572888|PMID:12847223) RGD PMID:12847223 PMID:19079182 MGI:5463560 MGI:5572888 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
G Tril TLR4 interactor with leucine-rich repeats enables ISO
IBA
(PMID:19710467)
PMID:21873635
RGD PMID:19710467 PMID:21873635 RGD:13792537 NCBI chr 4:82,922,327...82,927,172
Ensembl chr 4:82,922,328...82,927,172
JBrowse link
G Zranb2 zinc finger RANBP2-type containing 2 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:246,573,110...246,586,942
Ensembl chr 2:246,573,166...246,586,942
JBrowse link

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  molecular_function 19437
    binding 16664
      carbohydrate derivative binding 2130
        lipopolysaccharide binding 37
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