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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoid metabolic process
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Accession:GO:0001523 term browser browse the term
Definition:The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
Synonyms:exact_synonym: retinoid metabolism



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retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in TAS
ISS
Reactome
UniProt
Reactome
UniProt
GO_REF:0000024 Reactome:R-HSA-2453902 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148
JBrowse link
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in IDA (PMID:15369820), (PMID:16787387) UniProt
UniProt
PMID:15369820 PMID:16787387 NCBI chr 4:99,304,971...99,321,401
Ensembl chr 4:99,304,971...99,352,760
JBrowse link
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide acts_upstream_of_or_within ISO (MGI:2180234|PMID:12027900) MGI PMID:12027900 MGI:2180234 NCBI chr 4:99,336,497...99,352,746
Ensembl chr 4:99,336,497...99,352,746
JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IDA (PMID:15369820) UniProt
UniProt
PMID:15369820 NCBI chr 4:99,123,658...99,144,297
Ensembl chr 4:99,123,657...99,157,792
JBrowse link
G ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2180234|PMID:12027900) Ensembl
Ensembl
MGI
PMID:12027900 GO_REF:0000107 MGI:2180234 NCBI chr 4:99,070,978...99,088,788
Ensembl chr 4:99,070,978...99,088,801
JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in IDA (PMID:16787387), (PMID:9600267) UniProt
UniProt
PMID:9600267 PMID:16787387 NCBI chr 4:99,412,263...99,435,342
Ensembl chr 4:99,412,261...99,435,510
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in IMP (PMID:12732097) UniProt
UniProt
PMID:12732097 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in TAS
IDA
(PMID:12732097) Reactome
UniProt
Reactome
UniProt
PMID:12732097 Reactome:R-HSA-975634 NCBI chr 7:134,527,567...134,541,412
Ensembl chr 7:134,527,567...134,541,412
JBrowse link
G AKR1C1 aldo-keto reductase family 1 member C1 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr10:4,963,415...4,983,283
Ensembl chr10:4,963,253...4,983,283
JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G AKR1C4 aldo-keto reductase family 1 member C4 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr10:5,196,837...5,218,949
Ensembl chr10:5,195,462...5,218,949
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G AWAT2 acyl-CoA wax alcohol acyltransferase 2 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2187335 NCBI chr  X:70,040,542...70,049,938
Ensembl chr  X:70,040,542...70,049,938
JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in IDA
IEA
(PMID:11401432) UniProt
UniProt
Ensembl
PMID:11401432 GO_REF:0000107 GO_REF:0000117 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142
JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr11:112,175,512...112,218,946
Ensembl chr11:112,175,510...112,224,699
JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:9606960 RGD:1625388 NCBI chr 1:59,893,308...59,969,212
Ensembl chr 1:59,893,308...59,926,773
JBrowse link
G CYP4V2 cytochrome P450 family 4 subfamily V member 2 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2453902 NCBI chr 4:186,191,567...186,213,463
Ensembl chr 4:186,191,567...186,213,463
JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in
acts_upstream_of_or_within
TAS
IEA
IBA
ISO
(PMID:21873635)
(MGI:5528782|PMID:24005908)
Reactome
Reactome
Ensembl
GO_Central
MGI
GO_Central
PMID:21873635 PMID:24005908 GO_REF:0000107 MGI:5528782 Reactome:R-HSA-2187335 NCBI chr 1:12,567,910...12,618,210
Ensembl chr 1:12,567,910...12,618,210
JBrowse link
G DHRS4 dehydrogenase/reductase 4 involved_in ISO (PMID:12604222) UniProt PMID:12604222 NCBI chr14:23,953,770...23,969,279
Ensembl chr14:23,953,734...23,969,279
JBrowse link
G GPC1 glypican 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 2:240,435,663...240,468,076
Ensembl chr 2:240,435,663...240,468,076
JBrowse link
G GPC5 glypican 5 involved_in IEA UniProt GO_REF:0000117 NCBI chr13:91,398,621...92,867,237
Ensembl chr13:91,398,621...92,873,682
JBrowse link
G LRAT lecithin retinol acyltransferase involved_in TAS Reactome
Reactome
Reactome:R-HSA-2453902 Reactome:R-HSA-975634 NCBI chr 4:154,740,838...154,753,120
Ensembl chr 4:154,626,945...154,753,120
JBrowse link
G LRP1 LDL receptor related protein 1 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr12:57,128,483...57,213,361
Ensembl chr12:57,128,483...57,213,361
JBrowse link
G LRP2 LDL receptor related protein 2 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr 2:169,127,109...169,362,534
Ensembl chr 2:169,127,109...169,362,534
JBrowse link
G LRP8 LDL receptor related protein 8 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr 1:53,242,364...53,328,070
Ensembl chr 1:53,242,364...53,328,469
JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D involved_in TAS Reactome
Reactome
Reactome:R-HSA-2453902 NCBI chr 7:103,099,776...103,150,001
Ensembl chr 7:103,099,776...103,149,560
JBrowse link
G PLB1 phospholipase B1 involved_in TAS Reactome
Reactome
Reactome:R-HSA-975634 NCBI chr 2:28,496,060...28,644,142
Ensembl chr 2:28,457,145...28,644,142
JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IDA (PMID:9204961) UniProt
UniProt
PMID:9204961 NCBI chr 7:150,338,329...150,341,629
Ensembl chr 7:150,338,317...150,341,662
JBrowse link
G RBP3 retinol binding protein 3 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2187335 Reactome:R-HSA-2453902 NCBI chr10:47,348,363...47,357,881
Ensembl chr10:47,348,363...47,357,881
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2453902 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in TAS
IDA
(PMID:12226107) Reactome
UniProt
Reactome
UniProt
PMID:12226107 Reactome:R-HSA-2453902 Reactome:R-HSA-975634 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793
JBrowse link
G RDH12 retinol dehydrogenase 12 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2453902 NCBI chr14:67,701,886...67,734,451
Ensembl chr14:67,701,886...67,734,451
JBrowse link
G RDH16 retinol dehydrogenase 16 acts_upstream_of_or_within ISO (MGI:2153599|PMID:11562362) MGI PMID:11562362 MGI:2153599 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374
JBrowse link
G RDH5 retinol dehydrogenase 5 involved_in TAS
IBA
IEA
IDA
(PMID:21873635)
(PMID:9931293)
Reactome
GO_Central
Reactome
Ensembl
UniProt
UniProt
PMID:9931293 PMID:21873635 GO_REF:0000107 Reactome:R-HSA-2453902 NCBI chr12:55,720,393...55,724,705
Ensembl chr12:55,720,367...55,724,705
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IDA
TAS
(PMID:25112876) UniProt
UniProt
Reactome
Reactome
PMID:25112876 Reactome:R-HSA-2453902 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,449,954
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA
ISO
9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal Ensembl
RGD
Ensembl
PMID:8765131 GO_REF:0000107 RGD:2306683 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IDA (PMID:11304534) UniProt
UniProt
PMID:11304534 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167
JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IDA (PMID:21851338) UniProt
UniProt
PMID:21851338 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IMP (PMID:33495566) UniProt
UniProt
PMID:33495566 NCBI chr11:20,387,716...20,509,338
Ensembl chr11:20,387,558...20,509,338
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 involved_in IEA
ISO
Ensembl
Ensembl
RGD
PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374
JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGAT1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chr 8:144,314,584...144,326,852
Ensembl chr 8:144,314,584...144,326,910
JBrowse link
G ISX intestine specific homeobox acts_upstream_of_or_within ISO (MGI:3775349|PMID:18093975) MGI PMID:18093975 MGI:3775349 NCBI chr22:35,066,158...35,087,387
Ensembl chr22:35,066,136...35,087,387
JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in ISS
IDA
(PMID:29847635), (PMID:33375396) UniProt
UniProt
PMID:29847635 PMID:33375396 GO_REF:0000024 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 7:134,527,567...134,541,412
Ensembl chr 7:134,527,567...134,541,412
JBrowse link
G AKR1C1 aldo-keto reductase family 1 member C1 involved_in IDA (PMID:21851338) UniProt
UniProt
PMID:21851338 NCBI chr10:4,963,415...4,983,283
Ensembl chr10:4,963,253...4,983,283
JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IDA (PMID:21851338) UniProt
UniProt
PMID:21851338 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2655944|PMID:12610736) Ensembl
Ensembl
MGI
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IDA (PMID:11585737) UniProt
UniProt
PMID:11585737 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IDA (PMID:11007799) UniProt
UniProt
PMID:11007799 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115
JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within
IBA
IEA
NAS
IMP
IDA
ISO
(PMID:21873635)
(PMID:15983114)
(PMID:17951468)
(PMID:11401432), (PMID:24668807)
(MGI:5638293|PMID:25701869)
GO_Central
GO_Central
Ensembl
BHF-UCL
UniProt
UniProt
MGI
BHF-UCL
PMID:11401432 PMID:15983114 PMID:17951468 PMID:21873635 PMID:24668807 More... GO_REF:0000107 MGI:5638293 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142
JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within
NAS
IBA
IEA
ISO
(PMID:11278918)
(PMID:21873635)
(MGI:5638293|PMID:25701869)
UniProt
GO_Central
Ensembl
UniProt
MGI
GO_Central
PMID:11278918 PMID:21873635 PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr11:112,175,512...112,218,946
Ensembl chr11:112,175,510...112,224,699
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IDA
IEA
(PMID:15258110) UniProt
Ensembl
UniProt
PMID:15258110 GO_REF:0000107 NCBI chr 2:38,067,509...38,076,151
Ensembl chr 2:38,066,973...38,109,902
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in IDA (PMID:27059013) UniProt
UniProt
PMID:27059013 NCBI chr 2:127,183,832...127,220,299
Ensembl chr 2:127,183,832...127,220,313
JBrowse link
G DHRS13 dehydrogenase/reductase 13 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:28,897,781...28,903,079
Ensembl chr17:28,897,781...28,903,079
JBrowse link
G DHRS4 dehydrogenase/reductase 4 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2655870|PMID:12680773)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:12680773 PMID:21873635 MGI:2655870 NCBI chr14:23,953,770...23,969,279
Ensembl chr14:23,953,734...23,969,279
JBrowse link
G DHRS4L1 dehydrogenase/reductase 4 like 1 (pseudogene) involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:24,007,084...24,051,377
Ensembl chr14:24,036,439...24,051,028
JBrowse link
G DHRS4L2 dehydrogenase/reductase 4 like 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:23,969,874...24,006,408
Ensembl chr14:23,969,874...24,006,408
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IDA (PMID:19458327) UniProt
UniProt
PMID:19458327 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within IDA (PMID:12807874) MGI
MGI
PMID:12807874 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IBA
IDA
(PMID:21873635)
(PMID:18039331)
GO_Central
UniProt
GO_Central
UniProt
PMID:18039331 PMID:21873635 NCBI chr19:55,039,103...55,069,520
Ensembl chr19:55,039,108...55,071,291
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2180434|PMID:11897783) Ensembl
Ensembl
MGI
RGD
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,449,954
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IBA
IDA
(PMID:21873635)
(PMID:18926804), (PMID:19102727)
GO_Central
GO_Central
UniProt
UniProt
PMID:18926804 PMID:19102727 PMID:21873635 NCBI chr 8:56,300,005...56,320,175
Ensembl chr 8:56,300,005...56,320,776
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in IDA
IEA
ISO
(PMID:29240402) UniProt
Ensembl
UniProt
RGD
PMID:15950969 PMID:21138835 PMID:29240402 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IDA
IEA
ISO
(PMID:27759097)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
UniProt
UniProt
Ensembl
MGI
RGD
PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 More... GO_REF:0000107 MGI:1927016 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:15950969 GO_REF:0000107 RGD:6771322 NCBI chr 1:156,699,606...156,705,784
Ensembl chr 1:156,699,606...156,705,816
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in ISO
IEA
RGD
Ensembl
PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA
ISO
InterPro
InterPro
Ensembl
Ensembl
RGD
PMID:15950969 GO_REF:0000002 GO_REF:0000107 RGD:6771322 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709664|PMID:17473173) InterPro
InterPro
Ensembl
MGI
Ensembl
PMID:17473173 GO_REF:0000002 GO_REF:0000107 MGI:3709664 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRABP1 cellular retinoic acid binding protein 1 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr15:78,340,353...78,348,225
Ensembl chr15:78,340,353...78,348,225
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IDA (PMID:10823918) BHF-UCL
BHF-UCL
PMID:10823918 NCBI chr10:93,073,475...93,077,885
Ensembl chr10:93,073,475...93,077,885
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IDA
IEA
ISO
(PMID:10823918) BHF-UCL
Ensembl
BHF-UCL
RGD
PMID:10823918 PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 2:72,129,238...72,147,862
Ensembl chr 2:72,129,238...72,147,862
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in IDA (PMID:14532297) BHF-UCL
BHF-UCL
PMID:14532297 NCBI chr10:93,060,798...93,069,540
Ensembl chr10:93,060,798...93,069,540
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IDA (PMID:26936974) UniProt
UniProt
PMID:26936974 NCBI chr 7:983,181...989,640
Ensembl chr 7:983,181...989,640
JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,276,369...99,290,985
Ensembl chr 4:99,276,369...99,291,003
JBrowse link
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,304,971...99,321,401
Ensembl chr 4:99,304,971...99,352,760
JBrowse link
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3510590|PMID:15193143)
(MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412)
GO_Central
GO_Central
MGI
PMID:10358022 PMID:12851412 PMID:15193143 PMID:21873635 MGI:1338643 MGI:2675573 MGI:3510590 NCBI chr 4:99,336,497...99,352,746
Ensembl chr 4:99,336,497...99,352,746
JBrowse link
G ADH6 alcohol dehydrogenase 6 (class V) involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,202,639...99,219,246
Ensembl chr 4:99,202,638...99,219,537
JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668)
GO_Central
GO_Central
Ensembl
Ensembl
MGI
PMID:10358022 PMID:10402668 PMID:21873635 GO_REF:0000107 MGI:1338643 MGI:1340177 NCBI chr 4:99,412,263...99,435,342
Ensembl chr 4:99,412,261...99,435,510
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412)
(MGI:3608158|PMID:16207763)
(MGI:1336449|PMID:10191271)
MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:3612223|PMID:16368932)
(MGI:83148|PMID:8797830)
(MGI:2681052|PMID:14623241)
UniProt
UniProt
Ensembl
MGI
RGD
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 GO_REF:0000024 GO_REF:0000107 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IDA
IEA
ISO
(PMID:11585737)
(MGI:3701419|PMID:17207476)
(MGI:3608158|PMID:16207763)
UniProt
Ensembl
UniProt
MGI
PMID:11585737 PMID:16207763 PMID:17207476 GO_REF:0000107 MGI:3608158 MGI:3701419 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IDA
IBA
(PMID:11007799)
(PMID:21873635)
UniProt
UniProt
GO_Central
GO_Central
PMID:11007799 PMID:21873635 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115
JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in NAS (PMID:11278918) UniProt
UniProt
PMID:11278918 NCBI chr11:112,175,512...112,218,946
Ensembl chr11:112,175,510...112,224,699
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1313226|PMID:9826179) MGI
Ensembl
PMID:9826179 GO_REF:0000107 MGI:1313226 NCBI chr 1:156,699,606...156,705,784
Ensembl chr 1:156,699,606...156,705,816
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:22020119), (PMID:9716180)
(MGI:3522528|PMID:15531370)
UniProt
UniProt
MGI
PMID:9716180 PMID:15531370 PMID:22020119 MGI:3522528 NCBI chr10:93,073,475...93,077,885
Ensembl chr10:93,073,475...93,077,885
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IDA (PMID:22020119) UniProt
UniProt
PMID:22020119 NCBI chr 2:72,129,238...72,147,862
Ensembl chr 2:72,129,238...72,147,862
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in IDA (PMID:27059013) UniProt
UniProt
PMID:27059013 NCBI chr 2:127,183,832...127,220,299
Ensembl chr 2:127,183,832...127,220,313
JBrowse link
G CYP2C18 cytochrome P450 family 2 subfamily C member 18 involved_in IDA (PMID:11093772) UniProt
UniProt
PMID:11093772 NCBI chr10:94,683,729...94,736,190
Ensembl chr10:94,683,729...94,736,190
JBrowse link
G CYP2C8 cytochrome P450 family 2 subfamily C member 8 involved_in IDA (PMID:11093772) UniProt
UniProt
PMID:11093772 NCBI chr10:95,036,772...95,069,497
Ensembl chr10:95,036,772...95,069,497
JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in IDA (PMID:12711469) UniProt
UniProt
PMID:12711469 NCBI chr19:41,193,219...41,207,539
Ensembl chr19:41,193,210...41,207,539
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IDA (PMID:11093772) UniProt
UniProt
PMID:11093772 NCBI chr 7:99,756,967...99,784,184
Ensembl chr 7:99,756,960...99,784,248
JBrowse link
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 involved_in IDA (PMID:11093772) UniProt
UniProt
PMID:11093772 NCBI chr 7:99,648,194...99,679,996
Ensembl chr 7:99,648,194...99,679,998
JBrowse link
G CYP3A7 cytochrome P450 family 3 subfamily A member 7 involved_in IDA (PMID:11093772) UniProt
UniProt
PMID:11093772 NCBI chr 7:99,705,036...99,735,196
Ensembl chr 7:99,705,036...99,735,196
JBrowse link
G CYP3A7-CYP3A51P CYP3A7-CYP3A51P readthrough involved_in IDA (PMID:11093772) UniProt
UniProt
PMID:11093772 NCBI chr 7:99,684,677...99,735,196
Ensembl chr 7:99,684,957...99,735,102
JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510590|PMID:15193143) MGI
Ensembl
PMID:15193143 GO_REF:0000107 MGI:3510590 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829
JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374
JBrowse link
G SCPEP1 serine carboxypeptidase 1 involved_in ISS
ISO
UniProt
UniProt
RGD
PMID:11447226 GO_REF:0000024 RGD:70518 NCBI chr17:56,978,131...57,006,768
Ensembl chr17:56,978,129...57,006,768
JBrowse link
G UGT1A1 UDP glucuronosyltransferase family 1 member A1 involved_in IC (PMID:20308471) BHF-UCL
BHF-UCL
PMID:20308471 NCBI chr 2:233,760,270...233,773,300
Ensembl chr 2:233,760,270...233,773,300
JBrowse link
G UGT1A3 UDP glucuronosyltransferase family 1 member A3 involved_in IC (PMID:20308471) BHF-UCL
BHF-UCL
PMID:20308471 NCBI chr 2:233,729,042...233,773,300
Ensembl chr 2:233,729,042...233,773,300
JBrowse link
G UGT1A7 UDP glucuronosyltransferase family 1 member A7 involved_in IC (PMID:20308471) BHF-UCL
BHF-UCL
PMID:20308471 NCBI chr 2:233,681,901...233,773,300
Ensembl chr 2:233,681,901...233,773,300
JBrowse link
G UGT1A8 UDP glucuronosyltransferase family 1 member A8 involved_in IC (PMID:20308471) BHF-UCL
BHF-UCL
PMID:20308471 NCBI chr 2:233,617,633...233,773,300
Ensembl chr 2:233,617,633...233,773,300
JBrowse link
G UGT1A9 UDP glucuronosyltransferase family 1 member A9 involved_in IC (PMID:20308471) BHF-UCL
BHF-UCL
PMID:20308471 NCBI chr 2:233,671,898...233,773,300
Ensembl chr 2:233,671,898...233,773,300
JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,276,369...99,290,985
Ensembl chr 4:99,276,369...99,291,003
JBrowse link
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,304,971...99,321,401
Ensembl chr 4:99,304,971...99,352,760
JBrowse link
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3510590|PMID:15193143)
(MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412)
GO_Central
GO_Central
MGI
PMID:10358022 PMID:12851412 PMID:15193143 PMID:21873635 MGI:1338643 MGI:2675573 MGI:3510590 NCBI chr 4:99,336,497...99,352,746
Ensembl chr 4:99,336,497...99,352,746
JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IDA (PMID:16787387), (PMID:17279314) UniProt
UniProt
PMID:16787387 PMID:17279314 NCBI chr 4:99,123,658...99,144,297
Ensembl chr 4:99,123,657...99,157,792
JBrowse link
G ADH6 alcohol dehydrogenase 6 (class V) involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,202,639...99,219,246
Ensembl chr 4:99,202,638...99,219,537
JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668)
GO_Central
GO_Central
Ensembl
Ensembl
MGI
RGD
PMID:10358022 PMID:10402668 PMID:10829036 PMID:21873635 GO_REF:0000107 MGI:1338643 MGI:1340177 RGD:631904 NCBI chr 4:99,412,263...99,435,342
Ensembl chr 4:99,412,261...99,435,510
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in IEA
ISO
UniProt
UniProt
RGD
PMID:20709016 GO_REF:0000041 RGD:6903952 NCBI chr 7:134,527,567...134,541,412
Ensembl chr 7:134,527,567...134,541,412
JBrowse link
G AKR1B15 aldo-keto reductase family 1 member B15 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 7:134,549,110...134,579,869
Ensembl chr 7:134,549,110...134,579,875
JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2675573|PMID:12851412) UniProt
UniProt
MGI
PMID:12851412 GO_REF:0000041 MGI:2675573 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G AWAT2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr  X:70,040,542...70,049,938
Ensembl chr  X:70,040,542...70,049,938
JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142
JBrowse link
G CEL carboxyl ester lipase involved_in IEA GOC GO_REF:0000108 NCBI chr 9:133,061,981...133,071,861
Ensembl chr 9:133,061,981...133,071,861
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA
IDA
(PMID:10681376) UniProt
UniProt
PMID:10681376 GO_REF:0000041 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA
IDA
(PMID:10681376) UniProt
UniProt
PMID:10681376 GO_REF:0000041 NCBI chr15:74,748,845...74,756,607
Ensembl chr15:74,748,845...74,756,607
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA
IDA
(PMID:10681376), (PMID:15258110) UniProt
InterPro
Ensembl
UniProt
InterPro
PMID:10681376 PMID:15258110 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr 2:38,067,509...38,076,151
Ensembl chr 2:38,066,973...38,109,902
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in IEA
IDA
(PMID:27059013), (PMID:28701464) UniProt
UniProt
PMID:27059013 PMID:28701464 GO_REF:0000041 NCBI chr 2:127,183,832...127,220,299
Ensembl chr 2:127,183,832...127,220,313
JBrowse link
G CYP2C18 cytochrome P450 family 2 subfamily C member 18 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr10:94,683,729...94,736,190
Ensembl chr10:94,683,729...94,736,190
JBrowse link
G CYP2C8 cytochrome P450 family 2 subfamily C member 8 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr10:95,036,772...95,069,497
Ensembl chr10:95,036,772...95,069,497
JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 involved_in IDA
IEA
(PMID:10681376) UniProt
UniProt
PMID:10681376 GO_REF:0000041 NCBI chr22:42,126,499...42,130,810
Ensembl chr22:42,126,499...42,130,865
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA
IDA
(PMID:10681376) UniProt
UniProt
PMID:10681376 GO_REF:0000041 NCBI chr 7:99,756,967...99,784,184
Ensembl chr 7:99,756,960...99,784,248
JBrowse link
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr 7:99,648,194...99,679,996
Ensembl chr 7:99,648,194...99,679,998
JBrowse link
G CYP3A7 cytochrome P450 family 3 subfamily A member 7 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr 7:99,705,036...99,735,196
Ensembl chr 7:99,705,036...99,735,196
JBrowse link
G CYP3A7-CYP3A51P CYP3A7-CYP3A51P readthrough involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr 7:99,684,677...99,735,196
Ensembl chr 7:99,684,957...99,735,102
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 8:144,314,584...144,326,852
Ensembl chr 8:144,314,584...144,326,910
JBrowse link
G DGAT2 diacylglycerol O-acyltransferase 2 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr11:75,768,778...75,801,534
Ensembl chr11:75,759,512...75,801,535
JBrowse link
G DHRS13 dehydrogenase/reductase 13 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr17:28,897,781...28,903,079
Ensembl chr17:28,897,781...28,903,079
JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in TAS
IEA
(PMID:9705317) UniProt
InterPro
UniProt
InterPro
PMID:9705317 GO_REF:0000002 NCBI chr 1:12,567,910...12,618,210
Ensembl chr 1:12,567,910...12,618,210
JBrowse link
G DHRS4 dehydrogenase/reductase 4 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr14:23,953,770...23,969,279
Ensembl chr14:23,953,734...23,969,279
JBrowse link
G DHRS7 dehydrogenase/reductase 7 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr14:60,144,119...60,169,889
Ensembl chr14:60,144,119...60,169,856
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in NAS
IBA
(PMID:11304534)
(PMID:21873635)
UniProt
GO_Central
UniProt
PMID:11304534 PMID:21873635 NCBI chr 2:169,067,077...169,096,167
Ensembl chr 2:169,064,789...169,096,167
JBrowse link
G HSD17B6 hydroxysteroid 17-beta dehydrogenase 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:56,763,324...56,787,790
Ensembl chr12:56,752,161...56,787,790
JBrowse link
G LIPE lipase E, hormone sensitive type involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr19:42,401,514...42,427,388
Ensembl chr19:42,401,514...42,427,388
JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within
IEA
IDA
ISO
IBA
(PMID:10819989)
(MGI:3775853|PMID:18093970)
(PMID:21873635)
UniProt
InterPro
RGD
MGI
Ensembl
UniProt
InterPro
GO_Central
PMID:2253789 PMID:8460936 PMID:9244401 PMID:10819989 PMID:14642897 More... GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 MGI:3775853 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chr 4:154,740,838...154,753,120
Ensembl chr 4:154,626,945...154,753,120
JBrowse link
G PLB1 phospholipase B1 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:8117729 GO_REF:0000107 RGD:6903951 NCBI chr 2:28,496,060...28,644,142
Ensembl chr 2:28,457,145...28,644,142
JBrowse link
G PNLIP pancreatic lipase involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr10:116,545,931...116,567,855
Ensembl chr10:116,545,931...116,567,855
JBrowse link
G PNPLA2 patatin like phospholipase domain containing 2 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr11:818,914...825,573
Ensembl chr11:818,914...825,573
JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr  X:7,898,247...7,927,724
Ensembl chr  X:7,898,247...7,927,739
JBrowse link
G RBP1 retinol binding protein 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3510590|PMID:15193143), (MGI:3575475|PMID:15765518) RGD
Ensembl
Ensembl
MGI
PMID:14642897 PMID:15193143 PMID:15765518 GO_REF:0000107 MGI:3510590 MGI:3575475 RGD:6484737 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829
JBrowse link
G RBP4 retinol binding protein 4 involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:10232633)
(MGI:3775853|PMID:18093970)
BHF-UCL
BHF-UCL
MGI
PMID:10232633 PMID:18093970 MGI:3775853 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA
IDA
(PMID:19458327) UniProt
UniProt
PMID:19458327 GO_REF:0000041 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA
ISS
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793
JBrowse link
G RDH12 retinol dehydrogenase 12 involved_in IDA
IEA
(PMID:12226107) UniProt
Ensembl
UniProt
PMID:12226107 GO_REF:0000041 GO_REF:0000107 NCBI chr14:67,701,886...67,734,451
Ensembl chr14:67,701,886...67,734,451
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr19:55,039,103...55,069,520
Ensembl chr19:55,039,108...55,071,291
JBrowse link
G RDH14 retinol dehydrogenase 14 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5618338|PMID:25533474) UniProt
UniProt
Ensembl
MGI
PMID:25533474 GO_REF:0000041 GO_REF:0000107 MGI:5618338 NCBI chr 2:18,554,723...18,560,653
Ensembl chr 2:18,554,723...18,560,679
JBrowse link
G RDH16 retinol dehydrogenase 16 involved_in IEA
IBA
ISO
(PMID:21873635) UniProt
GO_Central
UniProt
RGD
PMID:7499345 PMID:21873635 GO_REF:0000041 RGD:1299624 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374
JBrowse link
G RDH5 retinol dehydrogenase 5 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr12:55,720,393...55,724,705
Ensembl chr12:55,720,367...55,724,705
JBrowse link
G RDH8 retinol dehydrogenase 8 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:21873635)
(MGI:3584232|PMID:15755727)
GOC
GO_Central
Ensembl
GOC
MGI
Ensembl
PMID:15755727 PMID:21873635 GO_REF:0000107 GO_REF:0000108 MGI:3584232 NCBI chr19:10,013,483...10,022,279
Ensembl chr19:10,013,249...10,022,279
JBrowse link
G RETSAT retinol saturase involved_in ISS
IBA
IEA
(PMID:15358783)
(PMID:21873635)
HGNC-UCL
GO_Central
Ensembl
HGNC-UCL
GO_Central
PMID:15358783 PMID:21873635 GO_REF:0000107 NCBI chr 2:85,341,955...85,354,528
Ensembl chr 2:85,341,955...85,354,531
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA
ISO
Ensembl
Ensembl
RGD
PMID:3603006 GO_REF:0000107 RGD:9585656 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,449,954
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IDA
IEA
IBA
(PMID:18926804), (PMID:19102727)
(PMID:21873635)
UniProt
UniProt
GO_Central
GO_Central
PMID:18926804 PMID:19102727 PMID:21873635 GO_REF:0000041 NCBI chr 8:56,300,005...56,320,175
Ensembl chr 8:56,300,005...56,320,776
JBrowse link
G SDR9C7 short chain dehydrogenase/reductase family 9C member 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:56,923,133...56,934,408
Ensembl chr12:56,923,133...56,934,408
JBrowse link
G TTR transthyretin involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr18:31,591,877...31,598,821
Ensembl chr18:31,557,009...31,598,833
JBrowse link
vitamin A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 involved_in NAS (PMID:15983114) BHF-UCL
BHF-UCL
PMID:15983114 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142
JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in NAS (PMID:8663198) UniProt
UniProt
PMID:8663198 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within
ISS
IBA
IEA
ISO
(PMID:21873635)
(MGI:1928450|PMID:11108736)
UniProt
GO_Central
Ensembl
UniProt
MGI
RGD
PMID:2253789 PMID:8460936 PMID:9244401 PMID:11108736 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:1928450 RGD:1599829 RGD:1599831 RGD:1599832 NCBI chr 4:154,740,838...154,753,120
Ensembl chr 4:154,626,945...154,753,120
JBrowse link
G PPARD peroxisome proliferator activated receptor delta involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:12576510 GO_REF:0000107 RGD:1625187 NCBI chr 6:35,342,558...35,428,178
Ensembl chr 6:35,342,558...35,428,191
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA
TAS
IMP
(PMID:3472205)
(PMID:15632377)
InterPro
InterPro
PINC
UniProt
UniProt
PMID:3472205 PMID:15632377 GO_REF:0000002 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829
JBrowse link
G RBP2 retinol binding protein 2 involved_in TAS (PMID:2992469) PINC
PINC
PMID:2992469 NCBI chr 3:139,452,884...139,476,516
Ensembl chr 3:139,452,884...139,480,747
JBrowse link
G RLBP1 retinaldehyde binding protein 1 involved_in TAS (PMID:9326942) PINC
PINC
PMID:9326942 NCBI chr15:89,209,869...89,221,579
Ensembl chr15:89,209,869...89,221,614
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in TAS (PMID:9326941) PINC
PINC
PMID:9326941 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,449,954
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19665
    metabolic process 13112
      cellular metabolic process 11006
        cellular lipid metabolic process 1102
          isoprenoid metabolic process 136
            terpenoid metabolic process 112
              diterpenoid metabolic process 101
                retinoid metabolic process 92
                  retinal metabolic process 21
                  retinoic acid metabolic process + 37
                  retinol metabolic process 56
                  vitamin A metabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 19665
    metabolic process 13112
      primary metabolic process 11520
        lipid metabolic process 1534
          cellular lipid metabolic process 1102
            isoprenoid metabolic process 136
              terpenoid metabolic process 112
                diterpenoid metabolic process 101
                  retinoid metabolic process 92
                    retinal metabolic process 21
                    retinoic acid metabolic process + 37
                    retinol metabolic process 56
                    vitamin A metabolic process + 10
paths to the root