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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoid metabolic process
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Accession:GO:0001523 term browser browse the term
Definition:The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
Synonyms:exact_synonym: retinoid metabolism



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retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in ISO (PMID:15369820), (PMID:16787387) UniProt PMID:15369820 PMID:16787387 NCBI chr 4:91,726,870...91,741,824
Ensembl chr 4:102,388,575...102,435,079
JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923
JBrowse link
G ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180234|PMID:12027900) MGI
Ensembl
PMID:12027900 GO_REF:0000107 MGI:2180234 NCBI chr 4:91,470,304...91,487,854
Ensembl chr 4:102,134,375...102,151,902
JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in ISO (PMID:16787387), (PMID:9600267) UniProt PMID:9600267 PMID:16787387 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:12732097) UniProt PMID:12732097 NCBI chr 7:126,400,861...126,417,756
Ensembl chr 7:138,912,953...138,924,095
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in ISO PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:61,843,567...61,897,012
Ensembl chr16:81,270,577...81,323,088
JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:9606960 RGD:1625388 NCBI chr 1:59,151,079...59,184,625
Ensembl chr 1:60,856,269...60,889,810
JBrowse link
G DHRS3 dehydrogenase/reductase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5528782|PMID:24005908) MGI
Ensembl
PMID:24005908 GO_REF:0000107 MGI:5528782 NCBI chr 1:11,319,109...11,370,463
Ensembl chr 1:12,533,696...12,584,381
JBrowse link
G LOC100974941 dehydrogenase/reductase SDR family member 4 involved_in ISO (PMID:12604222) UniProt PMID:12604222 Ensembl chr14:22,831,756...22,846,695 JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:141,953,600...141,956,991
Ensembl chr 7:154,106,275...154,109,635
JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286
JBrowse link
G RDH5 retinol dehydrogenase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,186,871...33,191,539
Ensembl chr12:33,911,309...33,920,506
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2662611|PMID:11876656) MGI
Ensembl
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:56,347,489...56,376,463
Ensembl chr2B:173,811,932...173,842,816
JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100986388 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,079,580...5,157,572
Ensembl chr10:5,081,214...5,139,812
JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:20,412,419...20,538,295
Ensembl chr11:20,324,196...20,449,681
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGAT1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chr 8:141,079,948...141,090,619
Ensembl chr 8:144,064,587...144,080,155
JBrowse link
G ISX intestine specific homeobox acts_upstream_of_or_within ISO (MGI:3775349|PMID:18093975) MGI PMID:18093975 MGI:3775349 NCBI chr22:16,071,117...16,095,029
Ensembl chr22:33,917,642...33,938,908
JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2655944|PMID:12610736) MGI
Ensembl
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611
JBrowse link
G BCO1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638293|PMID:25701869) MGI
Ensembl
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr16:61,843,567...61,897,012
Ensembl chr16:81,270,577...81,323,088
JBrowse link
G BCO2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638293|PMID:25701869) MGI
Ensembl
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr11:107,056,525...107,105,358
Ensembl chr11:110,899,703...110,942,547
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G LOC100974941 dehydrogenase/reductase SDR family member 4 acts_upstream_of_or_within ISO (MGI:2655870|PMID:12680773) MGI PMID:12680773 MGI:2655870 Ensembl chr14:22,831,756...22,846,695 JBrowse link
G LOC100986388 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,079,580...5,157,572
Ensembl chr10:5,081,214...5,139,812
JBrowse link
G LOC100986729 aldo-keto reductase family 1 member C1 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,003,610...5,020,648
Ensembl chr10:4,990,110...5,003,538
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12807874) MGI
Ensembl
PMID:12807874 GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2180434|PMID:11897783) RGD
Ensembl
MGI
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:52,746,371...52,769,269
Ensembl chr 8:50,113,413...50,137,717
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA
RGD
Ensembl
PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904) RGD
Ensembl
MGI
PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 MGI:1927016 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr2B:56,347,489...56,376,463
Ensembl chr2B:173,811,932...173,842,816
JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO
IEA
RGD
InterPro
PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709664|PMID:17473173) MGI
InterPro
Ensembl
PMID:17473173 GO_REF:0000002 GO_REF:0000107 MGI:3709664 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRABP1 cellular retinoic acid binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:57,269,794...57,277,697
Ensembl chr15:76,234,401...76,242,311
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO
IEA
RGD
Ensembl
PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,804,830...89,813,687
Ensembl chr10:93,317,798...93,325,315
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in ISO (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:1,140,855...1,147,788
Ensembl chr 7:1,353,510...1,362,781
JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668) MGI
Ensembl
PMID:10358022 PMID:10402668 GO_REF:0000107 MGI:1338643 MGI:1340177 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:3608158|PMID:16207763)
(MGI:1336449|PMID:10191271)
(MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412)
MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2681052|PMID:14623241)
(MGI:83148|PMID:8797830)
(MGI:3612223|PMID:16368932)
RGD
Ensembl
MGI
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 GO_REF:0000107 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3701419|PMID:17207476)
(MGI:3608158|PMID:16207763)
MGI
Ensembl
PMID:16207763 PMID:17207476 GO_REF:0000107 MGI:3608158 MGI:3701419 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1313226|PMID:9826179) MGI
Ensembl
PMID:9826179 GO_REF:0000107 MGI:1313226 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3522528|PMID:15531370) MGI
Ensembl
PMID:15531370 GO_REF:0000107 MGI:3522528 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G CYP2C8 cytochrome P450 family 2 subfamily C member 8 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr10:91,646,387...91,679,998
Ensembl chr10:95,157,661...95,186,620
JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,185,893...38,200,064
Ensembl chr19:46,693,025...46,705,950
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401
JBrowse link
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,621,561...91,654,164
Ensembl chr 7:105,123,437...105,155,322
JBrowse link
G CYP3A67 cytochrome P450 family 3 subfamily A member 67 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 7:91,678,209...91,707,321
Ensembl chr 7:105,160,420...105,208,799
JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3510590|PMID:15193143) MGI
Ensembl
PMID:15193143 GO_REF:0000107 MGI:3510590 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr17:51,055,293...51,084,032
Ensembl chr17:55,915,746...55,944,377
JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923
JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668) RGD
Ensembl
MGI
PMID:10358022 PMID:10402668 PMID:10829036 GO_REF:0000107 MGI:1338643 MGI:1340177 RGD:631904 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in ISO
IEA
RGD
GOC
PMID:20709016 GO_REF:0000108 RGD:6903952 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:2675573|PMID:12851412) MGI PMID:12851412 MGI:2675573 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G AWAT2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:59,308,600...59,318,940
Ensembl chr  X:69,372,246...69,381,644
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636
JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr15:53,692,877...53,699,279
Ensembl chr15:73,311,720...73,319,447
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013), (PMID:28701464) UniProt PMID:27059013 PMID:28701464 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 8:141,079,948...141,090,619
Ensembl chr 8:144,064,587...144,080,155
JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:11,319,109...11,370,463
Ensembl chr 1:12,533,696...12,584,381
JBrowse link
G DHRS7 dehydrogenase/reductase 7 involved_in IEA GOC GO_REF:0000108 NCBI chr14:40,750,407...40,771,106
Ensembl chr14:59,014,182...59,034,877
JBrowse link
G LIPE lipase E, hormone sensitive type involved_in IEA GOC GO_REF:0000108 NCBI chr19:39,289,162...39,315,067
Ensembl chr19:47,881,292...47,907,066
JBrowse link
G LOC100988273 cytochrome P450 2D6-like involved_in IEA UniProt GO_REF:0000041 NCBI chr22:23,022,449...23,031,627 JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3775853|PMID:18093970) RGD
Ensembl
InterPro
MGI
PMID:2253789 PMID:8460936 PMID:9244401 PMID:14642897 PMID:18093970 GO_REF:0000002 GO_REF:0000107 MGI:3775853 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747
JBrowse link
G PLB1 phospholipase B1 ISO RGD PMID:8117729 RGD:6903951 NCBI chr2A:28,502,449...28,650,348
Ensembl chr2A:28,584,636...28,730,640
JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 involved_in IEA GOC GO_REF:0000108 Ensembl chr  X:7,756,047...7,786,634 JBrowse link
G RBP1 retinol binding protein 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3510590|PMID:15193143)
(MGI:3510590|PMID:15193143), (MGI:3575475|PMID:15765518)
RGD
Ensembl
MGI
PMID:14642897 PMID:15193143 PMID:15765518 GO_REF:0000107 MGI:3510590 MGI:3575475 RGD:6484737 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3775853|PMID:18093970) MGI
Ensembl
PMID:18093970 GO_REF:0000107 MGI:3775853 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286
JBrowse link
G RDH12 retinol dehydrogenase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,297,854...48,314,502
Ensembl chr14:67,180,696...67,192,345
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA GOC GO_REF:0000108 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G RDH14 retinol dehydrogenase 14 involved_in
acts_upstream_of_or_within
ISO (MGI:6271140|PMID:12226107)
(MGI:5618338|PMID:25533474)
UniProt
MGI
PMID:12226107 PMID:25533474 MGI:5618338 MGI:6271140 NCBI chr2A:18,534,357...18,540,325 JBrowse link
G RDH8 retinol dehydrogenase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3584232|PMID:15755727) MGI
Ensembl
PMID:15755727 GO_REF:0000107 MGI:3584232 NCBI chr19:9,565,918...9,575,017
Ensembl chr19:10,226,185...10,235,114
JBrowse link
G RETSAT retinol saturase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:85,394,700...85,407,252
Ensembl chr2A:86,946,460...86,958,962
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA
RGD
GOC
PMID:3603006 GO_REF:0000108 RGD:9585656 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:52,746,371...52,769,269
Ensembl chr 8:50,113,413...50,137,717
JBrowse link
G TTR transthyretin involved_in IEA InterPro GO_REF:0000002 NCBI chr18:24,809,707...24,816,713
Ensembl chr18:28,407,893...28,414,960
JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1928450|PMID:11108736) RGD
Ensembl
MGI
PMID:2253789 PMID:8460936 PMID:9244401 PMID:11108736 GO_REF:0000107 MGI:1928450 RGD:1599829 RGD:1599831 RGD:1599832 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747
JBrowse link
G PPARD peroxisome proliferator activated receptor delta ISO RGD PMID:12576510 RGD:1625187 NCBI chr 6:34,903,798...34,987,208
Ensembl chr 6:36,003,988...36,081,132
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15365
    metabolic process 10025
      cellular metabolic process 8340
        cellular lipid metabolic process 874
          isoprenoid metabolic process 100
            terpenoid metabolic process 79
              diterpenoid metabolic process 68
                retinoid metabolic process 60
                  retinal metabolic process 18
                  retinoic acid metabolic process + 24
                  retinol metabolic process 30
                  vitamin A metabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 15365
    metabolic process 10025
      primary metabolic process 8920
        lipid metabolic process 1215
          cellular lipid metabolic process 874
            isoprenoid metabolic process 100
              terpenoid metabolic process 79
                diterpenoid metabolic process 68
                  retinoid metabolic process 60
                    retinal metabolic process 18
                    retinoic acid metabolic process + 24
                    retinol metabolic process 30
                    vitamin A metabolic process + 5
paths to the root