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ONTOLOGY REPORT - ANNOTATIONS

Term:retinoid metabolic process
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Accession:GO:0001523 term browser browse the term
Definition:The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
Synonyms:exact_synonym: retinoid metabolism
 only_in_taxon: NCBITaxon:33208 ! Metazoa

show annotations for term's descendants           Sort by:
 
retinoid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) ISO MGI:2180100 (MGI:2180234|PMID:12027900) RGD PMID:12027900 MGI:2180234 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857 		JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO (PMID:15369820) RGD PMID:15369820 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899 		JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide ISO MGI:2180101 (MGI:2180234|PMID:12027900) RGD PMID:12027900 MGI:2180234 NCBI chr 2:243,728,500...243,740,907
Ensembl chr 2:243,700,784...243,740,899 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide TAS
ISO		 (PMID:16787387), (PMID:9600267) RGD PMID:9600267 PMID:16787387, PMID:10829036 RGD:631904 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B ISS
ISO		 GO_REF:0000024
(PMID:12732097)		 UniProt
RGD		 PMID:12732097 GO_REF:0000024 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956 		JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 ISO (PMID:12732097) RGD PMID:12732097 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IDA PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Bco1 beta-carotene oxygenase 1 IDA
ISO		 PMID:12468597
(MGI:1931377|PMID:11092891)
(PMID:11401432)		 RGD PMID:11092891 PMID:11401432, PMID:12468597 MGI:1931377, RGD:634627 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808 		JBrowse link
G Ces1d carboxylesterase 1D TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr19:15,195,514...15,239,827
Ensembl chr19:15,033,108...15,239,821 		JBrowse link
G Ces1e carboxylesterase 1E TAS PMID:12230550 UniProt PMID:12230550 RGD:724430
G Ces1f carboxylesterase 1F TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr19:15,081,117...15,126,629
Ensembl chr19:15,081,158...15,335,002 		JBrowse link
G Ces2a carboxylesterase 2A TAS RGD PMID:12230550 RGD:724430 NCBI chr19:59,110...64,378
Ensembl chr19:59,197...64,303 		JBrowse link
G Ces2c carboxylesterase 2C TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr 1:282,640,752...282,648,319
Ensembl chr 1:282,638,017...282,702,424 		JBrowse link
G Ces2e carboxylesterase 2E TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr19:85,679...100,386
Ensembl chr19:85,606...100,424 		JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IDA RGD PMID:9606960 RGD:1625388 NCBI chr 5:119,546,458...119,564,843
Ensembl chr 5:119,546,461...119,564,846 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO
IBA		 MGI:5007106 (MGI:5528782|PMID:24005908)
PMID:21873635		 RGD PMID:24005908, PMID:21873635 MGI:5528782, RGD:13792537 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383 		JBrowse link
G LOC100365958 Rdh2 protein-like ISO (MGI:2153599|PMID:11562362) RGD PMID:11562362 MGI:2153599 NCBI chr 7:71,065,077...71,074,128
Ensembl chr 7:70,980,422...71,072,689 		JBrowse link
G LOC108348093 acylcarnitine hydrolase-like TAS PMID:12230550 UniProt PMID:12230550 RGD:724430 NCBI chr 1:282,671,390...282,691,028
Ensembl chr 1:282,638,017...282,702,424 		JBrowse link
G Rarres2 retinoic acid receptor responder 2 ISO (PMID:9204961) RGD PMID:9204961 NCBI chr 4:78,205,809...78,208,956
Ensembl chr 4:78,205,812...78,208,767 		JBrowse link
G Rbp3 retinol binding protein 3 IC RGD PMID:8282025 RGD:6893658 NCBI chr16:10,277,775...10,286,243
Ensembl chr16:10,277,775...10,286,243 		JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (PMID:12226107) RGD PMID:12226107 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611 		JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO (MGI:1101408|PMID:9407098) RGD PMID:9407098 MGI:1101408 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689 		JBrowse link
G Rdh5 retinol dehydrogenase 5 ISO (PMID:9931293)
(MGI:1350674|PMID:10588954)		 RGD PMID:9931293 PMID:10588954 MGI:1350674 NCBI chr 7:3,335,681...3,342,573
Ensembl chr 7:3,335,742...3,342,491 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (PMID:25112876)
(PMID:16150724)		 RGD PMID:16150724 PMID:25112876 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197 		JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEA
ISO		 GO_REF:0000107
(MGI:2662611|PMID:11876656)		 Ensembl
RGD		 PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO (MGI:2662611|PMID:11876656) RGD PMID:11876656 MGI:2662611 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 ISO (MGI:2662611|PMID:11876656) RGD PMID:11876656 MGI:2662611 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IDA 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO
ISS		 (PMID:11304534)
GO_REF:0000024		 RGD
UniProt		 PMID:11304534 GO_REF:0000024 NCBI chr 3:55,623,671...55,645,883
Ensembl chr 3:55,623,634...55,648,325 		JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO (MGI:2662611|PMID:11876656) RGD PMID:11876656 MGI:2662611 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689 		JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IDA RGD PMID:17167544 RGD:2306320 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c3 aldo-keto reductase family 1, member C3 ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:69,761,126...69,778,021
Ensembl chr17:69,761,118...69,778,021 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030 		JBrowse link
G Rdh16 retinol dehydrogenase 16 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat1 diacylglycerol O-acyltransferase 1 IMP RGD PMID:18000880 RGD:10400849 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737 		JBrowse link
G Isx intestine-specific homeobox ISO MGI:3775943 (MGI:3775349|PMID:18093975) RGD PMID:18093975 MGI:3775349 NCBI chr19:14,198,899...14,219,269
Ensembl chr19:14,198,899...14,218,531 		JBrowse link
retinal metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657 		JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:69,761,126...69,778,021
Ensembl chr17:69,761,118...69,778,021 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO (MGI:2655944|PMID:12610736) RGD PMID:12610736 MGI:2655944 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA
ISO		 GO_REF:0000107
(PMID:11585737)		 Ensembl
RGD		 PMID:11585737 GO_REF:0000107 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481 		JBrowse link
G Bco1 beta-carotene oxygenase 1 IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
MGI:2177469 (MGI:5638293|PMID:25701869)		 Ensembl
RGD		 PMID:25701869, PMID:21873635 GO_REF:0000107 MGI:5638293, RGD:13792537 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808 		JBrowse link
G Bco2 beta-carotene oxygenase 2 ISO
IBA		 MGI:1926923 (MGI:5638293|PMID:25701869)
PMID:21873635		 RGD PMID:25701869, PMID:21873635 MGI:5638293, RGD:13792537 NCBI chr 8:54,965,577...54,990,604
Ensembl chr 8:54,965,583...54,998,864 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISO
ISS		 GO_REF:0000107
(MGI:5572883|PMID:15258110)
GO_REF:0000024
(PMID:15258110)		 Ensembl
RGD
UniProt		 PMID:15258110 GO_REF:0000024 GO_REF:0000107 MGI:5572883 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722 		JBrowse link
G Dhrs13 dehydrogenase/reductase 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,329,407...65,334,533
Ensembl chr10:65,329,940...65,334,500 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 ISO (MGI:2655870|PMID:12680773) RGD PMID:12680773 MGI:2655870 NCBI chr15:34,155,043...34,167,073
Ensembl chr15:34,155,504...34,167,072 		JBrowse link
G Rbp4 retinol binding protein 4 ISO MGI:2445721 (MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:2150869 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711 		JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (PMID:19458327) RGD PMID:19458327 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030 		JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (PMID:12807874) RGD PMID:12807874 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611 		JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO
IBA		 (PMID:18039331)
PMID:21873635		 RGD PMID:18039331, PMID:21873635 RGD:13792537 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IMP
ISO		 MGI:2181399 (MGI:2180434|PMID:11897783) RGD PMID:11897783, PMID:21785167 MGI:2180434, RGD:6893661 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO
IBA		 (PMID:18926804), (PMID:19102727)
PMID:21873635		 RGD PMID:18926804 PMID:19102727, PMID:21873635 RGD:13792537 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP
ISO
ISS
IMP		 (PMID:29240402)
GO_REF:0000024		 RGD
UniProt		 PMID:29240402, PMID:15950969, PMID:21138835 GO_REF:0000024, RGD:6771322, RGD:6771354 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEP
ISO
ISS
IEA
IMP		 (MGI:1927016|PMID:11044606), (MGI:3042765|PMID:14623956), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
GO_REF:0000024
(PMID:27759097)
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:11013254 PMID:11044606 PMID:14623956 PMID:16241904 PMID:27759097, PMID:15950969, PMID:21138835 GO_REF:0000024 GO_REF:0000107 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370, RGD:6771322, RGD:6771354 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 IEP RGD PMID:15950969 RGD:6771322 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 IEP
IDA		 RGD PMID:15950969, PMID:21138835 RGD:6771322, RGD:6771354 NCBI chr 3:55,623,671...55,645,883
Ensembl chr 3:55,623,634...55,648,325 		JBrowse link
G Rbp1 retinol binding protein 1 IEP RGD PMID:15950969 RGD:6771322 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crabp1 cellular retinoic acid binding protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO (PMID:10823918)
(MGI:894533|PMID:9250660)		 RGD PMID:9250660 PMID:10823918 MGI:894533 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IMP
ISO		 (PMID:10823918) RGD PMID:10823918, PMID:21138835 RGD:6771354 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 ISO (PMID:14532297) RGD PMID:14532297 NCBI chr 1:256,369,410...256,380,649
Ensembl chr 1:256,370,850...256,378,335 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879 		JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) ISO
IBA		 MGI:2180099|MGI:2180100|MGI:97876 (MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412), (MGI:3510590|PMID:15193143)
PMID:21873635		 RGD PMID:10358022 PMID:12851412 PMID:15193143, PMID:21873635 MGI:1338643 MGI:2675573 MGI:3510590, RGD:13792537 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857 		JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,656,568...243,687,857
Ensembl chr 2:243,550,627...243,687,857 		JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,577,086...243,599,357
Ensembl chr 2:243,577,082...243,599,400 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
MGI:2180102 (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668)		 Ensembl
RGD		 PMID:10358022 PMID:10402668, PMID:21873635 GO_REF:0000107 MGI:1338643 MGI:1340177, RGD:13792537 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO MGI:1861722|MGI:2667220|MGI:3609477 (MGI:1336449|PMID:10191271), (MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412), (MGI:3608158|PMID:16207763) RGD PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 TAS
ISO
IDA		 MGI:1857891|MGI:2180721 (MGI:2681052|PMID:14623241), (MGI:3612223|PMID:16368932), (MGI:83148|PMID:8797830) RGD PMID:8797830 PMID:14623241 PMID:16368932, PMID:15205379, PMID:12547725 MGI:2681052 MGI:3612223 MGI:83148, RGD:1576366, RGD:1576367 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO (PMID:11585737)
MGI:1353450|MGI:3043947|MGI:3512079 (MGI:3608158|PMID:16207763), (MGI:3701419|PMID:17207476)		 RGD PMID:11585737 PMID:16207763 PMID:17207476 MGI:3608158 MGI:3701419 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 NAS
ISO		 (MGI:1313226|PMID:9826179) RGD PMID:9826179, PMID:7750498 MGI:1313226, RGD:61557 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO (PMID:22020119), (PMID:9716180)
MGI:2183292 (MGI:1195386|PMID:9442090), (MGI:3522528|PMID:15531370), (MGI:894533|PMID:9250660)		 RGD PMID:9250660 PMID:9442090 PMID:9716180 PMID:15531370 PMID:22020119 MGI:1195386 MGI:3522528 MGI:894533 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 ISS
ISO		 GO_REF:0000024
(PMID:22020119)		 UniProt
RGD		 PMID:22020119 GO_REF:0000024 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615 		JBrowse link
G Cyp2c24 cytochrome P450, family 2, subfamily c, polypeptide 24 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr 1:258,074,797...258,139,176
Ensembl chr 1:258,074,860...258,139,176 		JBrowse link
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr 1:147,236,480...147,307,988 JBrowse link
G Cyp2s1 cytochrome P450, family 2, subfamily s, polypeptide 1 ISO (PMID:12711469) RGD PMID:12711469 NCBI chr 1:82,595,211...82,610,350
Ensembl chr 1:82,595,211...82,610,350 		JBrowse link
G Cyp3a62 cytochrome P450, family 3, subfamily a, polypeptide 62 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr12:18,679,809...18,709,397
Ensembl chr12:18,678,594...18,709,397 		JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 ISO (PMID:11093772) RGD PMID:11093772 NCBI chr12:19,074,288...19,114,491
Ensembl chr12:19,074,583...19,114,399 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 NAS RGD PMID:12390888 RGD:633755 NCBI chr 3:55,623,671...55,645,883
Ensembl chr 3:55,623,634...55,648,325 		JBrowse link
G Rbp1 retinol binding protein 1 ISO MGI:2181412|MGI:87921 (MGI:3510590|PMID:15193143) RGD PMID:15193143 MGI:3510590 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
G Rdh16 retinol dehydrogenase 16 IDA RGD PMID:7499345 RGD:1299624 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689 		JBrowse link
G Scpep1 serine carboxypeptidase 1 IEP RGD PMID:11447226 RGD:70518 NCBI chr10:76,230,371...76,263,866
Ensembl chr10:76,230,373...76,263,866 		JBrowse link
retinol metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) ISO
IBA		 MGI:2180099|MGI:2180100|MGI:97876 (MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412), (MGI:3510590|PMID:15193143)
PMID:21873635		 RGD PMID:10358022 PMID:12851412 PMID:15193143, PMID:21873635 MGI:1338643 MGI:2675573 MGI:3510590, RGD:13792537 NCBI chr 2:243,550,655...243,562,243
Ensembl chr 2:243,550,627...243,687,857 		JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO
ISS		 (PMID:16787387), (PMID:17279314)
GO_REF:0000024		 RGD
UniProt		 PMID:16787387 PMID:17279314 GO_REF:0000024 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899 		JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,656,568...243,687,857
Ensembl chr 2:243,550,627...243,687,857 		JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:243,577,086...243,599,357
Ensembl chr 2:243,577,082...243,599,400 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IDA
IBA
ISO
IEA		 PMID:21873635
MGI:2180102 (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668)
GO_REF:0000107		 RGD
Ensembl		 PMID:10358022 PMID:10402668, PMID:10829036, PMID:21873635 GO_REF:0000107 MGI:1338643 MGI:1340177, RGD:631904, RGD:13792537 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:61,706,866...61,720,959
Ensembl chr 4:61,706,864...61,720,956 		JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEA
ISO		 GO_REF:0000041
MGI:2667220 (MGI:2675573|PMID:12851412)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:12851412 GO_REF:0000041 GO_REF:0000107 MGI:2675573 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:70,224,761...70,233,021
Ensembl chr  X:70,224,654...70,270,693 		JBrowse link
G Bco1 beta-carotene oxygenase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808 		JBrowse link
G Cel carboxyl ester lipase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO
IEA
ISS		 (PMID:10681376)
GO_REF:0000041
GO_REF:0000024		 RGD
UniProt		 PMID:10681376 GO_REF:0000024 GO_REF:0000041 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147 		JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO
IEA
ISS		 (PMID:10681376)
GO_REF:0000041
GO_REF:0000024		 RGD
UniProt		 PMID:10681376 GO_REF:0000024 GO_REF:0000041 NCBI chr 8:62,451,360...62,458,244
Ensembl chr 8:62,451,329...62,458,301 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISO
ISS		 GO_REF:0000002
(MGI:5572883|PMID:15258110)
GO_REF:0000041
GO_REF:0000024
(PMID:10681376), (PMID:15258110)
GO_REF:0000107		 InterPro
RGD
UniProt
Ensembl		 PMID:10681376 PMID:15258110 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 MGI:5572883 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722 		JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:10681376) RGD PMID:10681376 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436 		JBrowse link
G Cyp3a62 cytochrome P450, family 3, subfamily a, polypeptide 62 ISO (PMID:10681376) RGD PMID:10681376 NCBI chr12:18,679,809...18,709,397
Ensembl chr12:18,678,594...18,709,397 		JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737 		JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818 		JBrowse link
G Dhrs13 dehydrogenase/reductase 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:65,329,407...65,334,533
Ensembl chr10:65,329,940...65,334,500 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383 		JBrowse link
G Lipe lipase E, hormone sensitive type IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:82,248,031...82,266,727
Ensembl chr 1:82,248,046...82,266,727 		JBrowse link
G LOC100911615 patatin-like phospholipase domain-containing protein 2-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:213,997,721...214,002,811
Ensembl chr 1:213,997,709...214,002,815
Ensembl chr 1:213,997,709...214,002,815 		JBrowse link
G Lrat lecithin retinol acyltransferase IDA
ISO
IEA		 MGI:3038935|MGI:97879 (MGI:3775853|PMID:18093970), (MGI:6414681|PMID:28758396)
GO_REF:0000002
(PMID:10819989)
GO_REF:0000041		 RGD
InterPro
UniProt		 PMID:10819989 PMID:18093970 PMID:28758396, PMID:2253789, PMID:14642897, PMID:9244401, PMID:8460936 GO_REF:0000002 GO_REF:0000041 MGI:3775853 MGI:6414681, RGD:1599829, RGD:6484737, RGD:1599832, RGD:1599831 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300 		JBrowse link
G Plb1 phospholipase B1 IDA RGD PMID:8117729 RGD:6903951 NCBI chr 6:25,375,699...25,507,108
Ensembl chr 6:25,397,537...25,507,073 		JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:214,434,638...214,439,720
Ensembl chr 1:214,434,626...214,439,720 		JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:45,519,406...45,522,988
Ensembl chr  X:45,519,228...45,522,665 		JBrowse link
G Rbp1 retinol binding protein 1 IDA
ISO		 MGI:2181412|MGI:87921 (MGI:3510590|PMID:15193143), (MGI:3575475|PMID:15765518) RGD PMID:15193143 PMID:15765518, PMID:14642897 MGI:3510590 MGI:3575475, RGD:6484737 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
G Rbp2 retinol binding protein 2 TAS RGD PMID:3029082 RGD:729693 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711 		JBrowse link
G Rbp4 retinol binding protein 4 ISO (PMID:10232633)
MGI:1891259 (MGI:3775853|PMID:18093970)		 RGD PMID:10232633 PMID:18093970 MGI:3775853 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711 		JBrowse link
G Rdh10 retinol dehydrogenase 10 IEA
ISO		 GO_REF:0000041
(PMID:19458327)		 UniProt
RGD		 PMID:19458327 GO_REF:0000041 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030 		JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (MGI:6189614|PMID:29567832) RGD PMID:29567832 MGI:6189614 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611 		JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO (PMID:12226107)
(MGI:5442470|PMID:22621924)		 RGD PMID:12226107 PMID:22621924 MGI:5442470 NCBI chr 6:102,392,828...102,405,750
Ensembl chr 6:102,392,828...102,405,750 		JBrowse link
G Rdh13 retinol dehydrogenase 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350 		JBrowse link
G Rdh14 retinol dehydrogenase 14 ISO (MGI:5618338|PMID:25533474), (MGI:6271140|PMID:12226107) RGD PMID:12226107 PMID:25533474 MGI:5618338 MGI:6271140 NCBI chr 6:36,106,926...36,112,069
Ensembl chr 6:36,107,147...36,112,064 		JBrowse link
G Rdh16 retinol dehydrogenase 16 IDA
IEA		 GO_REF:0000041 UniProt PMID:7499345 GO_REF:0000041, RGD:1299624 NCBI chr 7:71,058,150...71,072,685
Ensembl chr 7:70,980,422...71,072,689 		JBrowse link
G Rdh7 retinol dehydrogenase 7 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:71,125,358...71,164,014 JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO (MGI:3584232|PMID:15755727) RGD PMID:15755727 MGI:3584232 NCBI chr 8:21,835,065...21,842,374
Ensembl chr 8:21,835,103...21,842,374 		JBrowse link
G Retsat retinol saturase IEA
IBA
ISO
ISS		 GO_REF:0000107
PMID:21873635
(MGI:3522397|PMID:15358783)		 Ensembl
RGD		 PMID:15358783, PMID:21873635, PMID:15358783 GO_REF:0000107 MGI:3522397, RGD:13792537, RGD:8553455 NCBI chr 4:100,465,365...100,474,128
Ensembl chr 4:100,465,170...100,474,301 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:3603006 RGD:9585656 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO
IBA		 (PMID:18926804), (PMID:19102727)
PMID:21873635		 RGD PMID:18926804 PMID:19102727, PMID:21873635 RGD:13792537 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075 		JBrowse link
G Ttr transthyretin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,532,963...15,542,180
Ensembl chr18:15,532,963...15,540,177 		JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrat lecithin retinol acyltransferase IDA
ISO		 (MGI:1928450|PMID:11108736), (MGI:6414681|PMID:28758396) RGD PMID:11108736 PMID:28758396, PMID:2253789, PMID:9244401, PMID:8460936 MGI:1928450 MGI:6414681, RGD:1599829, RGD:1599832, RGD:1599831 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300 		JBrowse link
G Ppard peroxisome proliferator-activated receptor delta IMP RGD PMID:12576510 RGD:1625187 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333 		JBrowse link
G Rbp1 retinol binding protein 1 ISO
ISS		 (PMID:15632377)
GO_REF:0000024		 RGD
UniProt		 PMID:15632377 GO_REF:0000024 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      cellular metabolic process 11041
        cellular lipid metabolic process 1022
          isoprenoid metabolic process 119
            terpenoid metabolic process 94
              diterpenoid metabolic process 83
                retinoid metabolic process 74
                  retinal metabolic process 16
                  retinoic acid metabolic process + 26
                  retinol metabolic process 43
                  vitamin A metabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      primary metabolic process 10848
        lipid metabolic process 1377
          cellular lipid metabolic process 1022
            isoprenoid metabolic process 119
              terpenoid metabolic process 94
                diterpenoid metabolic process 83
                  retinoid metabolic process 74
                    retinal metabolic process 16
                    retinoic acid metabolic process + 26
                    retinol metabolic process 43
                    vitamin A metabolic process + 5
paths to the root