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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase I transcription regulatory region sequence-specific DNA binding
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Accession:GO:0001163 term browser browse the term
Definition:Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase I.
Synonyms:related_synonym: RNA polymerase I regulatory region DNA binding
 alt_id: GO:0001013


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RNA polymerase I transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpa CCAAT/enhancer binding protein alpha enables ISO
ISS		 (PMID:20075868)
GO_REF:0000024		 RGD
UniProt		 PMID:20075868 GO_REF:0000024 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412 		JBrowse link
RNA polymerase I cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pih1d1 PIH1 domain containing 1 NOT|enables ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290 		JBrowse link
G Ubtf upstream binding transcription factor enables ISO (PMID:22368283) RGD PMID:22368283 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
RNA polymerase I core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A contributes_to ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor enables ISO (PMID:22368283) RGD PMID:22368283 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 contributes_to
enables		 ISO
IEA		 (PMID:22368283)
GO_REF:0000107		 RGD
Ensembl		 PMID:22368283 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 contributes_to ISO (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:21921198), (PMID:21921199)		 UniProt
GO_Central
Ensembl
RGD		 PMID:21921198 PMID:21921199 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C enables ISO
IBA		 (PMID:22368283)
GO_REF:0000033		 RGD
GO_Central		 PMID:22368283 GO_REF:0000033 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971 		JBrowse link
G Tbp TATA box binding protein enables ISO (PMID:11250903) RGD PMID:11250903 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Ubtf upstream binding transcription factor enables ISO
IBA		 (PMID:22368283)
GO_REF:0000033		 RGD
GO_Central		 PMID:22368283 GO_REF:0000033 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20736
    binding 17796
      organic cyclic compound binding 6223
        nucleic acid binding 3872
          transcription regulatory region nucleic acid binding 1303
            transcription cis-regulatory region binding 1298
              RNA polymerase I transcription regulatory region sequence-specific DNA binding 10
                RNA polymerase I cis-regulatory region sequence-specific DNA binding 2
                RNA polymerase I core promoter sequence-specific DNA binding 8
Path 2
Term Annotations click to browse term
  molecular_function 20736
    binding 17796
      organic cyclic compound binding 6223
        nucleic acid binding 3872
          DNA binding 2303
            double-stranded DNA binding 1457
              sequence-specific double-stranded DNA binding 1362
                transcription cis-regulatory region binding 1298
                  RNA polymerase I transcription regulatory region sequence-specific DNA binding 10
                    RNA polymerase I cis-regulatory region sequence-specific DNA binding 2
                    RNA polymerase I core promoter sequence-specific DNA binding 8
paths to the root