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ONTOLOGY REPORT - ANNOTATIONS

Term:intronic transcription regulatory region sequence-specific DNA binding
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Accession:GO:0001161 term browser browse the term
Definition:Binding to an intronic DNA sequence that regulates the transcription of the transcript it is contained within.
Comment:To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.
Synonyms:related_synonym: intronic transcription regulatory region DNA binding
 alt_id: GO:0044213


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intronic transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 BCL6, transcription repressor enables ISO (PMID:24863065) RGD PMID:24863065 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 enables ISO (MGI:4867118|PMID:20978075) RGD PMID:20978075 MGI:4867118 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Nkx2-1 NK2 homeobox 1 enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:22955271)
GO_REF:0000107
(PMID:23143308)
(MGI:5613464|PMID:22955271)		 UniProt
RGD
Ensembl		 PMID:22955271 PMID:23143308 GO_REF:0000024 GO_REF:0000107 MGI:5613464 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Thra thyroid hormone receptor alpha IDA RGD PMID:20368265 RGD:2324624 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hivep1 HIVEP zinc finger 1 enables ISO (PMID:10825206) RGD PMID:10825206 NCBI chr17:22,585,016...22,714,517
Ensembl chr17:22,585,016...22,711,956 		JBrowse link
G Hsf1 heat shock transcription factor 1 enables ISO (PMID:10561509) RGD PMID:10561509 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Hsf2 heat shock transcription factor 2 enables ISO (PMID:10561509) RGD PMID:10561509 NCBI chr20:36,819,864...36,847,490
Ensembl chr20:36,819,864...36,850,174 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 enables IEA
ISO		 GO_REF:0000107
(PMID:24550004)		 Ensembl
RGD		 PMID:24550004 GO_REF:0000107 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:17938240) RGD PMID:17938240 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO (PMID:12015306) RGD PMID:12015306 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Smyd3 SET and MYND domain containing 3 enables ISO (PMID:23752591) RGD PMID:23752591 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253 		JBrowse link
G Tbx1 T-box transcription factor 1 enables ISO (MGI:3621085|PMID:16556915)
(PMID:16556915)		 RGD PMID:16556915 MGI:3621085 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Vax1 ventral anterior homeobox 1 enables ISO (MGI:3578573|PMID:15905411)
(PMID:15905411)		 RGD PMID:15905411 MGI:3578573 NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192 		JBrowse link
G Vax2 ventral anterior homeobox 2 enables IEA
ISO		 GO_REF:0000107
(MGI:3578573|PMID:15905411)
(PMID:15905411)		 Ensembl
RGD		 PMID:15905411 GO_REF:0000107 MGI:3578573 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 enables ISO (MGI:3777198|PMID:12077251)
(PMID:12077251)		 RGD PMID:12077251 MGI:3777198 NCBI chr 3:116,176,779...116,193,752
Ensembl chr 3:116,176,798...116,193,787 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20736
    binding 17796
      organic cyclic compound binding 6223
        nucleic acid binding 3872
          transcription regulatory region nucleic acid binding 1303
            transcription cis-regulatory region binding 1298
              intronic transcription regulatory region sequence-specific DNA binding 15
                RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding 11
Path 2
Term Annotations click to browse term
  molecular_function 20736
    binding 17796
      organic cyclic compound binding 6223
        nucleic acid binding 3872
          DNA binding 2303
            double-stranded DNA binding 1457
              sequence-specific double-stranded DNA binding 1362
                transcription cis-regulatory region binding 1298
                  intronic transcription regulatory region sequence-specific DNA binding 15
                    RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding 11
paths to the root