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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II promoter clearance
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Accession:GO:0001111 term browser browse the term
Definition:A process that mediates the transition from the initiation to the elongation phases of transcription by RNA polymerase II, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors.
Synonyms:exact_synonym: promoter clearance from RNA polymerase II promoter;   promoter escape from RNA polymerase II promoter;   promoter-paused RNA polymerase II release


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RNA polymerase II promoter clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in ISO (PMID:22231121) RGD PMID:22231121 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in ISO (PMID:22231121) RGD PMID:22231121 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452 		JBrowse link
G Sub1 SUB1 regulator of transcription involved_in ISO (PMID:25308091) RGD PMID:25308091 NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436
Ensembl chr 2:61,005,666...61,020,436 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      macromolecule metabolic process 10146
        macromolecule biosynthetic process 7442
          gene expression 6970
            DNA-templated transcription 3497
              promoter clearance during DNA-templated transcription 3
                RNA polymerase II promoter clearance 3
                  negative regulation of promoter clearance from RNA polymerase II promoter 0
                  positive regulation of promoter clearance from RNA polymerase II promoter 0
                  regulation of promoter clearance from RNA polymerase II promoter + 0
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5736
          nucleobase-containing compound biosynthetic process 4689
            nucleic acid biosynthetic process 4419
              RNA biosynthetic process 4308
                DNA-templated transcription 3497
                  transcription by RNA polymerase II 2520
                    RNA polymerase II promoter clearance 3
                      negative regulation of promoter clearance from RNA polymerase II promoter 0
                      positive regulation of promoter clearance from RNA polymerase II promoter 0
                      regulation of promoter clearance from RNA polymerase II promoter + 0
paths to the root