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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II core promoter sequence-specific DNA binding
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Accession:GO:0000979 term browser browse the term
Definition:Binding to a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene.


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RNA polymerase II core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpb CCAAT/enhancer binding protein beta enables ISO
IEA		 (MGI:5648604|PMID:25472717)
GO_REF:0000107		 RGD
Ensembl		 PMID:25472717 GO_REF:0000107 MGI:5648604 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473 		JBrowse link
G Egr1 early growth response 1 IDA RGD PMID:21451041 RGD:5131648 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:16717091), (PMID:20798045) RGD PMID:16717091 PMID:20798045 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit enables ISO (PMID:10704222) RGD PMID:10704222 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 enables ISO (PMID:23144817) RGD PMID:23144817 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 enables ISO (PMID:29111974) RGD PMID:29111974 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511 		JBrowse link
G Gtf2b general transcription factor IIB enables ISO
ISS
IEA
IBA		 (PMID:10619841), (PMID:16230532), (PMID:7675079), (PMID:9420329)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033		 RGD
UniProt
Ensembl
GO_Central		 PMID:7675079 PMID:9420329 PMID:10619841 PMID:16230532 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO (PMID:19633671), (PMID:23637611) RGD PMID:19633671 PMID:23637611 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3f3a H3.3 histone A enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B enables ISO (PMID:19633671) RGD PMID:19633671 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709 		JBrowse link
G Hdac1 histone deacetylase 1 enables ISO (PMID:19057576) RGD PMID:19057576 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables ISO (PMID:15713121) RGD PMID:15713121 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752 		JBrowse link
G Pax6 paired box 6 enables IEA
ISO		 GO_REF:0000107
(MGI:5306308|PMID:16407227)		 Ensembl
RGD		 PMID:16407227 GO_REF:0000107 MGI:5306308 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 enables ISO
IEA		 (PMID:10541551)
GO_REF:0000107		 RGD
Ensembl		 PMID:10541551 GO_REF:0000107 NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma enables ISO (PMID:25921091) RGD PMID:25921091 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables ISO (PMID:21343296) RGD PMID:21343296 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Rest RE1-silencing transcription factor enables ISO (PMID:29024663) RGD PMID:29024663 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
G Rfx7 regulatory factor X, 7 enables ISO (PMID:29967452)
(MGI:6381212|PMID:29967452)		 RGD PMID:29967452 MGI:6381212 NCBI chr 8:73,254,051...73,339,209
Ensembl chr 8:73,254,051...73,339,209 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 enables ISO (PMID:23386060), (PMID:28753426) RGD PMID:23386060 PMID:28753426 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 enables ISO (PMID:25412659) RGD PMID:25412659 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Tbp TATA box binding protein enables ISO (PMID:29111974) RGD PMID:29111974 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 enables ISO (PMID:15767669) RGD PMID:15767669 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20732
    binding 17784
      organic cyclic compound binding 6222
        nucleic acid binding 3871
          transcription regulatory region nucleic acid binding 1300
            transcription cis-regulatory region binding 1295
              RNA polymerase II transcription regulatory region sequence-specific DNA binding 1189
                RNA polymerase II core promoter sequence-specific DNA binding 23
Path 2
Term Annotations click to browse term
  molecular_function 20732
    binding 17784
      organic cyclic compound binding 6222
        nucleic acid binding 3871
          DNA binding 2302
            sequence-specific DNA binding 1470
              sequence-specific double-stranded DNA binding 1359
                transcription cis-regulatory region binding 1295
                  RNA polymerase II transcription regulatory region sequence-specific DNA binding 1189
                    RNA polymerase II core promoter sequence-specific DNA binding 23
paths to the root