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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription cis-regulatory region binding
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Accession:GO:0000976 term browser browse the term
Definition:Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
Comment:Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.
Synonyms:exact_synonym: transcription regulatory region sequence-specific DNA binding
 narrow_synonym: bacterial-type RNA polymerase regulatory region DNA binding;   bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding;   eubacterial-type RNA polymerase regulatory region DNA binding;   eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding
 broad_synonym: regulatory region DNA binding
 related_synonym: transcription regulatory region DNA binding
 alt_id: GO:0000975;   GO:0000984;   GO:0001017;   GO:0044212

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transcription cis-regulatory region binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936546:3,737,908...3,783,492
Ensembl chrNW_004936546:3,737,851...3,783,588 		JBrowse link
G Ahrr aryl-hydrocarbon receptor repressor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936815:1,031,696...1,045,032 JBrowse link
G Ar androgen receptor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:485,903...647,820
Ensembl chrNW_004936635:485,903...647,932 		JBrowse link
G Arid4a AT-rich interaction domain 4A enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936495:2,690,231...2,762,213
Ensembl chrNW_004936495:2,690,328...2,761,418 		JBrowse link
G Arid4b AT-rich interaction domain 4B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:17,116,304...17,257,640
Ensembl chrNW_004936484:17,116,229...17,258,277 		JBrowse link
G Arid5a AT-rich interaction domain 5A enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936744:539,150...545,021
Ensembl chrNW_004936744:537,168...546,017 		JBrowse link
G Arid5b AT-rich interaction domain 5B enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936614:1,072,263...1,252,573
Ensembl chrNW_004936614:1,072,260...1,252,283 		JBrowse link
G Asb8 ankyrin repeat and SOCS box containing 8 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:6,034,469...6,042,827
Ensembl chrNW_004936512:6,033,966...6,042,872 		JBrowse link
G Ash2l ASH2 like, histone lysine methyltransferase complex subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936710:1,489,483...1,519,469
Ensembl chrNW_004936710:1,489,522...1,518,849 		JBrowse link
G Atf3 activating transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:909,302...922,619
Ensembl chrNW_004936557:908,318...922,624 		JBrowse link
G Atf4 activating transcription factor 4 contributes_to
enables		 ISO
IEA		 (PMID:12871976) ParkinsonsUK-UCL
Ensembl		 PMID:12871976 GO_REF:0000107 NCBI chrNW_004936492:2,114,478...2,115,969
Ensembl chrNW_004936492:2,110,634...2,115,996 		JBrowse link
G Atf5 activating transcription factor 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,713,527...3,717,824
Ensembl chrNW_004936664:3,713,527...3,717,824 		JBrowse link
G Atf6 activating transcription factor 6 enables ISO (PMID:16469704) ParkinsonsUK-UCL PMID:16469704 NCBI chrNW_004937131:170,649...183,942 JBrowse link
G Atf6b activating transcription factor 6 beta enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,476,061...1,487,353
Ensembl chrNW_004936727:1,475,863...1,491,172 		JBrowse link
G Atmin ATM interactor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936547:3,192,904...3,339,985
Ensembl chrNW_004936475:28,711,984...28,719,281 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,038,345...10,039,345
Ensembl chrNW_004936521:10,038,765...10,039,223 		JBrowse link
G Bahd1 bromo adjacent homology domain containing 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:3,902,558...3,927,746
Ensembl chrNW_004936471:3,902,625...3,927,829 		JBrowse link
G Basp1 brain abundant membrane attached signal protein 1 enables ISO (MGI:4418604|PMID:19050011)
(PMID:19050011)		 UniProt PMID:19050011 MGI:4418604 NCBI chrNW_004936480:19,695,949...19,812,681 JBrowse link
G Bcor BCL6 corepressor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:6,764,043...6,812,194
Ensembl chrNW_004936502:6,764,907...6,792,916 		JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 enables ISO (MGI:5014424|PMID:21680841)
(PMID:21680841)		 UniProt PMID:21680841 MGI:5014424 NCBI chrNW_004936528:5,167,611...5,239,128
Ensembl chrNW_004936528:5,164,481...5,239,128 		JBrowse link
G Brca1 BRCA1 DNA repair associated enables ISO (PMID:20820192)
(MGI:5009779|PMID:20820192)		 BHF-UCL PMID:20820192 MGI:5009779 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brd4 bromodomain containing 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:5,176,682...5,246,102
Ensembl chrNW_004936596:5,177,147...5,246,518 		JBrowse link
G Brd7 bromodomain containing 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,394,423...3,432,998
Ensembl chrNW_004936475:3,393,373...3,433,103 		JBrowse link
G Calcoco1 calcium binding and coiled-coil domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,947,826...10,964,372
Ensembl chrNW_004936512:10,947,681...10,964,431 		JBrowse link
G Carm1 coactivator associated arginine methyltransferase 1 enables ISO (MGI:4887324|PMID:18188184)
(PMID:18188184)		 UniProt PMID:18188184 MGI:4887324 NCBI chrNW_004936659:1,071,883...1,120,917
Ensembl chrNW_004936659:1,090,164...1,123,920 		JBrowse link
G Cbx3 chromobox 3 enables ISO (MGI:5569417|PMID:24413057) UniProt PMID:24413057 MGI:5569417 NCBI chrNW_004936478:2,981,218...2,989,329
Ensembl chrNW_004936478:2,981,228...2,989,324 		JBrowse link
G Cbx4 chromobox 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:3,943,933...3,950,124
Ensembl chrNW_004936594:3,943,924...3,950,196 		JBrowse link
G Ccnt1 cyclin T1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,567,663...6,588,107
Ensembl chrNW_004936512:6,562,974...6,588,409 		JBrowse link
G Cdk5rap2 CDK5 regulatory subunit associated protein 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936487:8,900,375...9,081,547
Ensembl chrNW_004936487:8,900,530...9,081,527 		JBrowse link
G Cdk9 cyclin dependent kinase 9 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796 		JBrowse link
G Cdx1 caudal type homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:4,736,621...4,752,354
Ensembl chrNW_004936504:4,736,666...4,752,260 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha enables ISO (PMID:12695546), (PMID:28186500)
(PMID:18632661)		 UniProt
MGI		 PMID:12695546 PMID:18632661 PMID:28186500 NCBI chrNW_004936570:2,513,561...2,516,213 JBrowse link
G Cebpd CCAAT enhancer binding protein delta enables ISO (PMID:18632661) MGI PMID:18632661 NCBI chrNW_004936590:4,919,862...4,920,612 JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,131,198...1,154,615
Ensembl chrNW_004936595:1,130,078...1,157,822 		JBrowse link
G Ciart circadian associated repressor of transcription enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936580:566,745...571,160 JBrowse link
G Ciita class II major histocompatibility complex transactivator enables ISO (PMID:19041327) BHF-UCL PMID:19041327 NCBI chrNW_004936530:9,033,510...9,073,341 JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO RGD PMID:16382163 PMID:21367864 RGD:10059371 RGD:7247438 NCBI chrNW_004936631:3,721,307...3,785,346
Ensembl chrNW_004936631:3,721,313...3,780,892 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3 like 1 enables ISO PMID:15665855
(MGI:5616321|PMID:15665855)		 ParkinsonsUK-UCL PMID:15665855 MGI:5616321 RGD:1558627 NCBI chrNW_004936562:2,739,908...2,772,484
Ensembl chrNW_004936562:2,739,905...2,772,484 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3 like 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:2,302,921...2,413,486
Ensembl chrNW_004936592:2,308,156...2,413,510 		JBrowse link
G Creb3l3 cAMP responsive element binding protein 3 like 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,378,802...2,386,490
Ensembl chrNW_004936588:2,378,802...2,386,431 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:3,133,849...3,168,472
Ensembl chrNW_004936562:3,133,633...3,168,480 		JBrowse link
G Ctcf CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733
Ensembl chrNW_004936475:17,987,156...18,031,760 		JBrowse link
G Ctcfl CCCTC-binding factor like enables ISO (PMID:18413740) UniProt PMID:18413740 NCBI chrNW_004936530:312,630...335,929 JBrowse link
G Ddit3 DNA damage inducible transcript 3 enables ISO (PMID:24939851)
(MGI:3525819|PMID:15601821)		 ParkinsonsUK-UCL PMID:15601821 PMID:24939851 MGI:3525819 NCBI chrNW_004936646:1,665,019...1,669,212 JBrowse link
G Dhx36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:1,946,684...1,987,036
Ensembl chrNW_004936519:1,946,652...1,987,070 		JBrowse link
G Dlx2 distal-less homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:2,262,873...2,265,391
Ensembl chrNW_004936509:2,262,873...2,265,391 		JBrowse link
G Dlx3 distal-less homeobox 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,625,862...11,630,035
Ensembl chrNW_004936490:11,625,862...11,631,131 		JBrowse link
G Dlx5 distal-less homeobox 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936585:3,462,063...3,466,641
Ensembl chrNW_004936585:3,461,944...3,466,641 		JBrowse link
G E2f1 E2F transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026 		JBrowse link
G Egr1 early growth response 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:7,625,956...7,629,041
Ensembl chrNW_004936531:7,625,892...7,629,749 		JBrowse link
G Egr2 early growth response 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936753:1,958,250...1,962,640
Ensembl chrNW_004936753:1,958,264...1,962,640 		JBrowse link
G Elk1 ETS transcription factor ELK1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:13,402,726...13,418,214
Ensembl chrNW_004936502:13,402,728...13,418,214 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:4,065,767...5,100,690
Ensembl chrNW_004936586:4,066,498...5,100,035 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:3,728,971...3,795,612
Ensembl chrNW_004936572:3,730,327...3,795,625 		JBrowse link
G Etv5 ETS variant transcription factor 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,795,000...3,854,269
Ensembl chrNW_004936578:3,794,982...3,854,140 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:22821416 RGD:7242953 NCBI chrNW_004936527:5,024,077...5,069,152
Ensembl chrNW_004936527:5,024,068...5,063,939 		JBrowse link
G Fezf1 FEZ family zinc finger 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:3,027,138...3,030,442
Ensembl chrNW_004936605:3,027,122...3,030,449 		JBrowse link
G Fezf2 FEZ family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936637:4,045,224...4,051,058
Ensembl chrNW_004936637:4,047,119...4,052,741 		JBrowse link
G Fli1 Fli-1 proto-oncogene, ETS transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:3,448,870...3,576,406
Ensembl chrNW_004936572:3,448,862...3,577,836 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,384,710...4,388,118
Ensembl chrNW_004936488:4,384,705...4,388,122 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit enables ISO
IEA		 RGD
Ensembl		 PMID:21367864 GO_REF:0000107 RGD:7247438 NCBI chrNW_004936493:4,308,683...4,327,102
Ensembl chrNW_004936493:4,304,395...4,327,179 		JBrowse link
G Foxa1 forkhead box A1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:11,529,546...11,535,224
Ensembl chrNW_004936494:11,529,546...11,535,224 		JBrowse link
G Foxa2 forkhead box A2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936620:2,966,341...2,969,349
Ensembl chrNW_004936620:2,966,341...2,969,349 		JBrowse link
G Foxa3 forkhead box A3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:2,196,530...2,202,924
Ensembl chrNW_004936706:2,196,468...2,203,113 		JBrowse link
G Foxc2 forkhead box C2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Foxd3 forkhead box D3 enables ISO (PMID:7958446) MGI PMID:7958446 NCBI chrNW_004936692:951,394...953,612
Ensembl chrNW_004936692:951,562...953,001 		JBrowse link
G Foxf1 forkhead box F1 enables ISO (PMID:17261592), (PMID:7958446) MGI PMID:7958446 PMID:17261592 NCBI chrNW_004943883:4...1,756 JBrowse link
G Foxh1 forkhead box H1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:7,789,486...7,791,067
Ensembl chrNW_004936470:7,789,541...7,791,039 		JBrowse link
G Foxi1 forkhead box I1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936609:4,667,425...4,694,259
Ensembl chrNW_004936609:4,667,425...4,669,746 		JBrowse link
G Foxj1 forkhead box J1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,284,799...1,288,898
Ensembl chrNW_004936594:1,284,781...1,289,361 		JBrowse link
G Foxk1 forkhead box K1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:1,126,168...1,255,354
Ensembl chrNW_004936765:1,133,287...1,148,907 		JBrowse link
G Foxk2 forkhead box K2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936923:109,973...166,952
Ensembl chrNW_004936923:111,248...170,535 		JBrowse link
G Foxm1 forkhead box M1 enables ISO (PMID:17261592) MGI PMID:17261592 NCBI chrNW_004936606:3,185,289...3,198,427
Ensembl chrNW_004936606:3,185,982...3,198,378 		JBrowse link
G Foxn1 forkhead box N1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936538:4,717,509...4,745,504
Ensembl chrNW_004936538:4,731,958...4,744,796 		JBrowse link
G Foxn4 forkhead box N4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936769:1,061,907...1,081,350
Ensembl chrNW_004936769:1,062,061...1,080,444 		JBrowse link
G Foxo3 forkhead box O3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,788,036...4,907,600
Ensembl chrNW_004936564:4,787,992...4,903,837 		JBrowse link
G Foxp1 forkhead box P1 ISO RGD PMID:21606195 RGD:11561924 NCBI chrNW_004936603:2,631,781...3,146,104
Ensembl chrNW_004936603:2,632,274...2,830,324 		JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936640:1,882,297...1,917,210
Ensembl chrNW_004936640:1,882,238...1,914,232 		JBrowse link
G Gabpb1 GA binding protein transcription factor subunit beta 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:12,340,328...12,402,236
Ensembl chrNW_004936471:12,340,134...12,368,706 		JBrowse link
G Gabpb2 GA binding protein transcription factor subunit beta 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:1,283,593...1,323,110
Ensembl chrNW_004936580:1,290,991...1,321,925 		JBrowse link
G Gata1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:742,862...750,843
Ensembl chrNW_004936721:742,862...750,768 		JBrowse link
G Gata3 GATA binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gata4 GATA binding protein 4 enables ISO (PMID:15059951)
(PMID:9566909)
PMID:12606287		 AgBase
MGI
BHF-UCL		 PMID:9566909 PMID:12606287 PMID:15059951 RGD:8554170 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Gata5 GATA binding protein 5 enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936514:10,061,675...10,070,541
Ensembl chrNW_004936514:10,061,675...10,070,541 		JBrowse link
G Gata6 GATA binding protein 6 enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936550:1,814,336...1,844,399
Ensembl chrNW_004936550:1,814,336...1,844,399 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:6,610,565...6,618,509
Ensembl chrNW_004936537:6,610,565...6,618,450 		JBrowse link
G Gli1 GLI family zinc finger 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,622,308...1,629,787
Ensembl chrNW_004936646:1,622,308...1,629,779 		JBrowse link
G Gli2 GLI family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:49,616,552...49,788,760
Ensembl chrNW_004936469:49,617,095...49,673,213 		JBrowse link
G Glis2 GLIS family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:161,419...168,012
Ensembl chrNW_004936694:163,501...167,659 		JBrowse link
G Gmnn geminin DNA replication inhibitor NOT|enables ISO (MGI:3663964|PMID:16924111)
(PMID:16924111)		 UniProt PMID:16924111 MGI:3663964 NCBI chrNW_004936671:1,017,621...1,027,224
Ensembl chrNW_004936671:1,018,124...1,026,968 		JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:6,199,525...6,247,282
Ensembl chrNW_004936532:6,199,453...6,247,295 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 contributes_to
enables		 ISO
IEA		 (PMID:11802795) BHF-UCL
Ensembl		 PMID:11802795 GO_REF:0000107 NCBI chrNW_004936515:8,289,764...8,292,937
Ensembl chrNW_004936515:8,289,315...8,293,175 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 contributes_to
enables		 ISO
IEA		 (MGI:4362015|PMID:11812799) BHF-UCL
Ensembl		 PMID:11812799 GO_REF:0000107 MGI:4362015 NCBI chrNW_004936516:4,692,926...4,695,625
Ensembl chrNW_004936516:4,692,926...4,695,632 		JBrowse link
G Hdac1 histone deacetylase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,320,635...15,351,418
Ensembl chrNW_004936474:15,320,729...15,350,860 		JBrowse link
G Hdac4 histone deacetylase 4 contributes_to ISO (PMID:18850004) BHF-UCL PMID:18850004 NCBI chrNW_004936745:1,730,743...1,942,071
Ensembl chrNW_004936745:1,730,694...1,942,074 		JBrowse link
G Hdac5 histone deacetylase 5 contributes_to
enables		 ISO
IEA		 (PMID:19351956) BHF-UCL
Ensembl		 PMID:19351956 GO_REF:0000107 NCBI chrNW_004936541:561,721...598,915
Ensembl chrNW_004936541:558,414...599,195 		JBrowse link
G Hhex hematopoietically expressed homeobox enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:2,137,490...2,143,797
Ensembl chrNW_004936601:2,136,873...2,143,857 		JBrowse link
G Hinfp histone H4 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,072,771...4,083,973
Ensembl chrNW_004936542:4,072,624...4,084,064 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hmgb1 high mobility group box 1 enables ISO (PMID:19158276) UniProt PMID:19158276 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Hmgb2 high mobility group box 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936516:4,536,664...4,539,331
Ensembl chrNW_004936516:4,534,306...4,539,387 		JBrowse link
G Hnf1a HNF1 homeobox A enables ISO (PMID:12453420), (PMID:15961790) BHF-UCL PMID:12453420 PMID:15961790 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505 		JBrowse link
G Hnf1b HNF1 homeobox B enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:2,401,053...2,425,989
Ensembl chrNW_004936530:2,401,043...2,454,466 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,793,791...1,806,564
Ensembl chrNW_004936661:1,793,801...1,806,579 		JBrowse link
G Hoxa13 homeobox A13 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:3,824,715...3,827,277
Ensembl chrNW_004936478:3,824,715...3,827,277 		JBrowse link
G Hoxc13 homeobox C13 enables ISO (PMID:27506447) ARUK-UCL PMID:27506447 NCBI chrNW_004936512:11,160,343...11,166,616 JBrowse link
G Hsf1 heat shock transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:7,927,734...7,950,805
Ensembl chrNW_004936470:7,928,095...7,933,337 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 enables ISO (MGI:3822269|PMID:18804520), (PMID:7969165) UniProt PMID:7969165 PMID:18804520 MGI:3822269 NCBI chrNW_004936686:1,459,582...1,556,478
Ensembl chrNW_004936686:1,462,145...1,556,451 		JBrowse link
G Irf1 interferon regulatory factor 1 enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936647:2,686,247...2,693,633
Ensembl chrNW_004936647:2,686,414...2,693,636 		JBrowse link
G Irf2 interferon regulatory factor 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936554:4,706,688...4,793,236
Ensembl chrNW_004936554:4,706,650...4,793,701 		JBrowse link
G Irf3 interferon regulatory factor 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936664:3,477,750...3,482,489
Ensembl chrNW_004936664:3,475,543...3,481,533 		JBrowse link
G Irf4 interferon regulatory factor 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936633:1,565,293...1,580,859
Ensembl chrNW_004936633:1,564,637...1,580,859 		JBrowse link
G Irf5 interferon regulatory factor 5 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936579:6,138,372...6,149,531
Ensembl chrNW_004936579:6,138,281...6,145,205 		JBrowse link
G Irf6 interferon regulatory factor 6 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936557:3,292,927...3,309,002
Ensembl chrNW_004936557:3,292,873...3,311,369 		JBrowse link
G Irf7 interferon regulatory factor 7 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936888:445,340...448,801
Ensembl chrNW_004936888:445,549...448,392 		JBrowse link
G Irf8 interferon regulatory factor 8 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936641:2,608,109...2,622,446
Ensembl chrNW_004936641:2,608,100...2,622,409 		JBrowse link
G Irf9 interferon regulatory factor 9 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936722:380,193...385,887
Ensembl chrNW_004936722:380,572...384,372 		JBrowse link
G Isl1 ISL LIM homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:15,805,259...15,817,854
Ensembl chrNW_004936480:15,805,247...15,817,854 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:3,034,364...3,037,632
Ensembl chrNW_004936522:3,035,346...3,036,350 		JBrowse link
G Kcnh2 potassium voltage-gated channel subfamily H member 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:6,380,222...6,412,390
Ensembl chrNW_004936527:6,379,669...6,412,390 		JBrowse link
G Kdm5a lysine demethylase 5A enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:486,424...570,546
Ensembl chrNW_004936606:485,655...570,739 		JBrowse link
G Klf1 KLF transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,946,614...1,950,003
Ensembl chrNW_004936659:1,947,075...1,950,003 		JBrowse link
G Klf11 KLF transcription factor 11 enables ISO (PMID:21171965) BHF-UCL PMID:21171965 NCBI chrNW_004936532:6,282,313...6,290,569 JBrowse link
G Klf15 KLF transcription factor 15 enables ISO (MGI:5312158|PMID:22367544) UniProt PMID:22367544 MGI:5312158 NCBI chrNW_004936898:519,572...529,319 JBrowse link
G Klf17 KLF transcription factor 17 enables ISO (MGI:4410400|PMID:19801974) UniProt PMID:19801974 MGI:4410400 NCBI chrNW_004936474:25,413,907...25,422,643 JBrowse link
G Klf4 KLF transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:5,105,456...5,109,970
Ensembl chrNW_004936559:5,105,463...5,109,970 		JBrowse link
G Kmt2d lysine methyltransferase 2D enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,819,240...6,860,852
Ensembl chrNW_004936512:6,822,057...6,854,451 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469 		JBrowse link
G Lhx3 LIM homeobox 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,561,433...1,573,074
Ensembl chrNW_004936669:1,564,102...1,573,047 		JBrowse link
G LOC101956559 core histone macro-H2A.2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269
Ensembl chrNW_004936521:8,473,794...8,509,268 		JBrowse link
G LOC101956822 interferon regulatory factor 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936485:18,806,852...18,827,537
Ensembl chrNW_004936485:18,818,423...18,827,543 		JBrowse link
G LOC101960773 cyclic AMP-dependent transcription factor ATF-7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,780,826...10,884,806
Ensembl chrNW_004936512:10,785,763...10,884,795 		JBrowse link
G LOC101971629 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101976824 nuclear factor of activated T cells 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:3,453,475...3,579,292
Ensembl chrNW_004936514:3,467,178...3,578,882 		JBrowse link
G Mafk MAF bZIP transcription factor K enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936754:1,652,412...1,656,570
Ensembl chrNW_004936754:1,651,704...1,656,549 		JBrowse link
G Mef2c myocyte enhancer factor 2C enables ISO (MGI:4940010|PMID:8035824) BHF-UCL PMID:8035824 MGI:4940010 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661 		JBrowse link
G Men1 menin 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,504,489...4,510,085
Ensembl chrNW_004936599:4,504,397...4,510,555 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,533,264...15,534,576
Ensembl chrNW_004936483:15,533,522...15,534,576 		JBrowse link
G Mrtfa myocardin related transcription factor A enables ISO (PMID:17991879) MGI PMID:17991879 NCBI chrNW_004936492:1,234,025...1,384,838
Ensembl chrNW_004936492:1,282,674...1,383,696 		JBrowse link
G Msx1 msh homeobox 1 enables
contributes_to		 IEA
ISO		 (PMID:23371388)
(MGI:6874923|PMID:23371388)		 Ensembl
UniProt		 PMID:23371388 GO_REF:0000107 MGI:6874923 NCBI chrNW_004936477:17,406,551...17,413,615
Ensembl chrNW_004936477:17,409,191...17,412,919 		JBrowse link
G Msx2 msh homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936609:1,216,436...1,221,528
Ensembl chrNW_004936609:1,216,436...1,221,561 		JBrowse link
G Mterf3 mitochondrial transcription termination factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:46,275,587...46,296,456
Ensembl chrNW_004936470:46,275,587...46,296,456 		JBrowse link
G Mzf1 myeloid zinc finger 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:142,600...155,836
Ensembl chrNW_004937062:142,383...153,480 		JBrowse link
G Nanog Nanog homeobox enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936892:181,834...187,691 JBrowse link
G Ncor1 nuclear receptor corepressor 1 enables ISO (MGI:3604169|PMID:16127449) BHF-UCL PMID:16127449 MGI:3604169 NCBI chrNW_004936821:382,756...538,254
Ensembl chrNW_004936821:382,383...536,223 		JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 enables ISO PMID:19538478
(MGI:5285124|PMID:21514407), (MGI:6871969|PMID:24970700), (MGI:7565895|PMID:19538478)		 UniProt PMID:19538478 PMID:21514407 PMID:24970700 MGI:5285124 MGI:6871969 MGI:7565895 RGD:401901216 NCBI chrNW_004936475:18,462,424...18,557,832
Ensembl chrNW_004936475:18,462,298...18,555,220 		JBrowse link
G Nfatc4 nuclear factor of activated T cells 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:178,866...187,847
Ensembl chrNW_004936722:179,200...187,800 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:6,589,967...6,621,171
Ensembl chrNW_004936509:6,590,630...6,620,262 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 enables ISO
IEA		 RGD
Ensembl		 PMID:14576180 GO_REF:0000107 RGD:1358515 NCBI chrNW_004936520:733,760...850,563
Ensembl chrNW_004936520:733,668...829,435 		JBrowse link
G Nfya nuclear transcription factor Y subunit alpha contributes_to
enables		 ISO
IEA		 (PMID:11256944)
(PMID:15516209)		 ParkinsonsUK-UCL
MGI
Ensembl		 PMID:11256944 PMID:15516209 GO_REF:0000107 NCBI chrNW_004936476:18,728,575...18,750,917
Ensembl chrNW_004936476:18,725,907...18,750,864 		JBrowse link
G Nfyb nuclear transcription factor Y subunit beta contributes_to ISO (PMID:11256944)
(PMID:15516209)		 ParkinsonsUK-UCL
MGI		 PMID:11256944 PMID:15516209 NCBI chrNW_004936492:10,359,387...10,377,537 JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma contributes_to
enables		 ISO
IEA		 (PMID:11256944)
(PMID:15516209)		 ParkinsonsUK-UCL
MGI
Ensembl		 PMID:11256944 PMID:15516209 GO_REF:0000107 NCBI chrNW_004936474:22,368,279...22,432,671
Ensembl chrNW_004936474:22,369,313...22,433,166 		JBrowse link
G Nkx2-1 NK2 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:10,517,488...10,520,567
Ensembl chrNW_004936494:10,517,488...10,520,566 		JBrowse link
G Nkx2-5 NK2 homeobox 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936609:2,406,004...2,408,980
Ensembl chrNW_004936609:2,406,004...2,409,046 		JBrowse link
G Nkx3-1 NK3 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:7,087,677...7,091,334
Ensembl chrNW_004936555:7,088,577...7,091,334 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 enables ISO
IEA		 RGD
Ensembl		 PMID:8015547 GO_REF:0000107 RGD:10448983 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 contributes_to
enables		 ISO
IEA		 (PMID:18511497)
(MGI:4399016|PMID:17107947)		 BHF-UCL
Ensembl		 PMID:17107947 PMID:18511497 GO_REF:0000107 MGI:4399016 NCBI chrNW_004936562:1,937,665...1,946,680
Ensembl chrNW_004936562:1,937,667...1,946,669 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 enables ISO (PMID:26888176) UniProt PMID:26888176 NCBI chrNW_004936492:13,315,265...13,365,186
Ensembl chrNW_004936492:13,315,265...13,374,034 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:4,084,161...4,194,858
Ensembl chrNW_004936567:4,084,608...4,212,854 		JBrowse link
G Ovol2 ovo like zinc finger 2 enables ISO (PMID:19700410) BHF-UCL PMID:19700410 NCBI chrNW_004936485:2,096,495...2,128,002
Ensembl chrNW_004936485:2,096,495...2,128,540 		JBrowse link
G Pax2 paired box 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pax6 paired box 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,952,529...5,980,889
Ensembl chrNW_004936533:5,957,971...5,982,075 		JBrowse link
G Pax8 paired box 8 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,523,658...1,553,464
Ensembl chrNW_004936783:1,523,661...1,576,568 		JBrowse link
G Pbx1 PBX homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:20,200,236...20,440,623
Ensembl chrNW_004936481:20,203,405...20,440,629 		JBrowse link
G Per1 period circadian regulator 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:1,366,883...1,382,138
Ensembl chrNW_004936595:1,366,875...1,382,170 		JBrowse link
G Per2 period circadian regulator 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:221,601...263,284
Ensembl chrNW_004936525:221,510...263,295 		JBrowse link
G Per3 period circadian regulator 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936623:2,291,211...2,362,693
Ensembl chrNW_004936623:2,290,614...2,336,634 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,925,153...28,055,632
Ensembl chrNW_004936471:27,925,153...28,055,632 		JBrowse link
G Pitx2 paired like homeodomain 2 enables ISO (PMID:12612071), (PMID:9685346) BHF-UCL PMID:9685346 PMID:12612071 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO RGD PMID:8632766 PMID:12818430 RGD:731231 RGD:9727455 NCBI chrNW_004936481:18,607,212...18,679,828
Ensembl chrNW_004936481:18,617,572...18,678,183 		JBrowse link
G Pou2f2 POU class 2 homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:335,613...393,854
Ensembl chrNW_004936706:320,539...392,414 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:19409607), (PMID:19736317)
(PMID:17541407), (PMID:25901318)
(MGI:4399014|PMID:17541407), (PMID:25901318)		 BHF-UCL
MGI
UniProt		 PMID:17541407 PMID:19409607 PMID:19736317 PMID:25901318 MGI:4399014 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Pparg peroxisome proliferator activated receptor gamma enables ISO (PMID:18293083)
(PMID:16127449), (PMID:21035761)
PMID:19383491
(MGI:3604169|PMID:16127449), (MGI:4881351|PMID:21035761)		 BHF-UCL
UniProt		 PMID:16127449 PMID:18293083 PMID:19383491 PMID:21035761 MGI:3604169 MGI:4881351 RGD:8553457 NCBI chrNW_004936602:1,230,907...1,368,588
Ensembl chrNW_004936602:1,230,907...1,304,743 		JBrowse link
G Prdm1 PR/SET domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:2,594,362...2,690,680
Ensembl chrNW_004936564:2,667,660...2,690,683 		JBrowse link
G Prdm16 PR/SET domain 16 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:400,819...446,768
Ensembl chrNW_004936737:404,846...446,985 		JBrowse link
G Prdm5 PR/SET domain 5 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936662:388,279...524,803
Ensembl chrNW_004936662:390,894...516,485 		JBrowse link
G Prox1 prospero homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:4,185,712...4,240,680
Ensembl chrNW_004936628:4,185,706...4,238,451 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:5,224,679...5,264,853
Ensembl chrNW_004936559:5,226,223...5,264,491 		JBrowse link
G Rara retinoic acid receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,376,217...15,420,638
Ensembl chrNW_004936490:15,376,205...15,421,611 		JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:7,260,342...7,291,721
Ensembl chrNW_004936557:7,260,290...7,291,721 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583
Ensembl chrNW_004936599:3,801,636...3,809,813 		JBrowse link
G Rest RE1 silencing transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936482:19,018,454...19,040,438 JBrowse link
G Rfx3 regulatory factor X3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:1,506,944...1,802,256
Ensembl chrNW_004936503:1,606,742...1,800,364 		JBrowse link
G Rfx6 regulatory factor X6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:94,589...145,135
Ensembl chrNW_004936658:94,589...145,135 		JBrowse link
G Rnf10 ring finger protein 10 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:389,961...427,213
Ensembl chrNW_004936668:389,343...427,258 		JBrowse link
G Runx1 RUNX family transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:7,621,328...7,710,909
Ensembl chrNW_004936500:7,486,954...7,709,504 		JBrowse link
G Runx2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157 		JBrowse link
G Rxra retinoid X receptor alpha contributes_to
enables		 ISO
IEA		 (MGI:4399016|PMID:17107947) BHF-UCL
Ensembl		 PMID:17107947 GO_REF:0000107 MGI:4399016 NCBI chrNW_004936669:2,735,111...2,763,060
Ensembl chrNW_004936669:2,738,448...2,763,070 		JBrowse link
G Rxrb retinoid X receptor beta enables ISO (MGI:4820711|PMID:18922886)
(PMID:18922886)		 UniProt PMID:18922886 MGI:4820711 NCBI chrNW_004936476:25,655,164...25,662,369
Ensembl chrNW_004936476:25,655,209...25,662,416 		JBrowse link
G Sfpq splicing factor proline and glutamine rich enables ISO (MGI:5014424|PMID:21680841) UniProt PMID:21680841 MGI:5014424 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Six1 SIX homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Smad3 SMAD family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Smad4 SMAD family member 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Smad6 SMAD family member 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:26,781,420...26,856,556
Ensembl chrNW_004936471:26,781,549...26,856,571 		JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:2,835,512...3,001,365
Ensembl chrNW_004936503:2,835,496...3,001,381 		JBrowse link
G Sox10 SRY-box transcription factor 10 enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936492:3,173,770...3,183,423
Ensembl chrNW_004936492:3,173,741...3,185,024 		JBrowse link
G Sox11 SRY-box transcription factor 11 enables ISO PMID:12637543
(PMID:18505825)
(MGI:3803393|PMID:18505825)		 GO_Central
UniProt		 PMID:12637543 PMID:18505825 MGI:3803393 RGD:8554307 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Sox13 SRY-box transcription factor 13 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:631,126...641,967
Ensembl chrNW_004936567:630,855...642,017 		JBrowse link
G Sox17 SRY-box transcription factor 17 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
G Sox18 SRY-box transcription factor 18 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:11,231,327...11,233,292
Ensembl chrNW_004936514:11,231,305...11,233,337 		JBrowse link
G Sox2 SRY-box transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:1,630,698...1,632,607
Ensembl chrNW_004936566:1,631,822...1,632,613 		JBrowse link
G Sox5 SRY-box transcription factor 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936548:3,213,305...3,599,876
Ensembl chrNW_004936548:3,213,466...3,599,425 		JBrowse link
G Sox6 SRY-box transcription factor 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:2,331,706...2,912,423
Ensembl chrNW_004936528:2,331,661...2,906,082 		JBrowse link
G Sox7 SRY-box transcription factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:2,616,086...2,622,436
Ensembl chrNW_004936675:2,616,077...2,622,436 		JBrowse link
G Sox8 SRY-box transcription factor 8 enables IEA UniProt GO_REF:0000117 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Sp1 Sp1 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,655,116...10,693,025
Ensembl chrNW_004936512:10,655,349...10,693,042 		JBrowse link
G Spi1 Spi-1 proto-oncogene enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,852,759...1,870,647
Ensembl chrNW_004936562:1,852,740...1,870,472 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 enables ISO (PMID:11739104) MGI PMID:11739104 NCBI chrNW_004936492:115,923...174,614
Ensembl chrNW_004936492:115,821...174,775 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,119,189...17,178,402
Ensembl chrNW_004936490:17,117,290...17,178,402 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase enables ISO (MGI:5569417|PMID:24413057) UniProt PMID:24413057 MGI:5569417 NCBI chrNW_004936721:646,778...661,144
Ensembl chrNW_004936721:646,772...661,091 		JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase enables ISO (MGI:5569417|PMID:24413057) UniProt PMID:24413057 MGI:5569417 NCBI chrNW_004936613:1,443,663...1,467,776
Ensembl chrNW_004936613:1,443,629...1,467,229 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:26,871,865...26,951,804
Ensembl chrNW_004936470:26,871,847...26,951,806 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,824,928...12,827,238
Ensembl chrNW_004936504:12,824,953...12,827,214 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 enables ISO (PMID:19251649) BHF-UCL PMID:19251649 NCBI chrNW_004936480:252,435...256,609
Ensembl chrNW_004936480:252,435...256,609 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:28,049,326...28,061,495
Ensembl chrNW_004936474:28,047,808...28,056,065 		JBrowse link
G Tbl1x transducin beta like 1 X-linked enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936644:237,638...282,470 JBrowse link
G Tbl1xr1 TBL1X/Y related 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:5,721,541...5,861,838
Ensembl chrNW_004936566:5,790,532...5,861,838 		JBrowse link
G Tbp TATA-box binding protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:46,572...65,304
Ensembl chrNW_004937098:46,248...65,441 		JBrowse link
G Tbx21 T-box transcription factor 21 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635 		JBrowse link
G Tcf12 transcription factor 12 contributes_to ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chrNW_004936471:18,223,221...18,576,922 JBrowse link
G Tcf20 transcription factor 20 enables ISO (PMID:7760812) MGI PMID:7760812 NCBI chrNW_004936718:180,145...233,037
Ensembl chrNW_004936718:179,777...358,166 		JBrowse link
G Tcf3 transcription factor 3 contributes_to ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chrNW_004936588:884,817...913,052
Ensembl chrNW_004936588:884,789...912,753 		JBrowse link
G Tcf7 transcription factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:3,473,877...3,660,565
Ensembl chrNW_004936486:3,473,843...3,660,576 		JBrowse link
G Tfam transcription factor A, mitochondrial enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936614:4,595,973...4,605,040
Ensembl chrNW_004936614:4,596,617...4,605,104 		JBrowse link
G Tfap2a transcription factor AP-2 alpha enables ISO (PMID:12586840), (PMID:18718911), (PMID:31146003) ARUK-UCL PMID:12586840 PMID:18718911 PMID:31146003 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
G Tfap4 transcription factor AP-4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:210,863...222,531
Ensembl chrNW_004936694:210,672...222,619 		JBrowse link
G Tfe3 transcription factor binding to IGHM enhancer 3 enables ISO (MGI:3662947|PMID:16936731)
(PMID:16936731)		 UniProt PMID:16936731 MGI:3662947 NCBI chrNW_004936721:933,572...945,717
Ensembl chrNW_004936721:933,404...945,725 		JBrowse link
G Tfeb transcription factor EB enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,189,096...18,233,622
Ensembl chrNW_004936476:18,189,041...18,233,701 		JBrowse link
G Thra thyroid hormone receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,188,341...15,206,032
Ensembl chrNW_004936490:15,193,150...15,206,784 		JBrowse link
G Tnf tumor necrosis factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tp53 tumor protein p53 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Tp63 tumor protein p63 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729 		JBrowse link
G Tp73 tumor protein p73 enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936737:171,894...211,464
Ensembl chrNW_004936737:172,467...211,464 		JBrowse link
G Vsx1 visual system homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936620:710,917...718,205
Ensembl chrNW_004936620:710,671...718,595 		JBrowse link
G Wt1 WT1 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693 		JBrowse link
G Xbp1 X-box binding protein 1 enables ISO (PMID:23184933), (PMID:25190803)
(PMID:18556558)
(MGI:3798313|PMID:18556558)		 UniProt PMID:18556558 PMID:23184933 PMID:25190803 MGI:3798313 NCBI chrNW_004936657:2,891,171...2,895,409
Ensembl chrNW_004936657:2,891,907...2,896,174 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:1,055,478...1,137,924
Ensembl chrNW_004936586:1,055,335...1,137,984 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567 		JBrowse link
G Yy1 YY1 transcription factor enables ISO (PMID:9857059) MGI PMID:9857059 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
G Zbed2 zinc finger BED-type containing 2 enables ISO (PMID:32385160) UniProt PMID:32385160 NCBI chrNW_004936834:473,265...474,584 JBrowse link
G Zbed4 zinc finger BED-type containing 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:864,945...888,665
Ensembl chrNW_004936629:864,993...888,159 		JBrowse link
G Zbed6 zinc finger BED-type containing 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:895,758...901,684
Ensembl chrNW_004936567:897,053...899,992 		JBrowse link
G Zbtb14 zinc finger and BTB domain containing 14 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936779:1,198,469...1,205,671
Ensembl chrNW_004936779:1,199,490...1,207,934 		JBrowse link
G Zbtb20 zinc finger and BTB domain containing 20 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:1,776,065...2,546,286
Ensembl chrNW_004936536:1,776,081...1,829,837 		JBrowse link
G Zbtb46 zinc finger and BTB domain containing 46 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,987,728...11,027,450
Ensembl chrNW_004936514:10,987,984...11,027,502 		JBrowse link
G Zbtb48 zinc finger and BTB domain containing 48 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:1,334,084...1,342,341
Ensembl chrNW_004936623:1,334,046...1,344,153 		JBrowse link
G Zbtb8a zinc finger and BTB domain containing 8A enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,511,125...15,552,244
Ensembl chrNW_004936474:15,511,080...15,551,897 		JBrowse link
G Zfhx3 zinc finger homeobox 3 enables ISO (PMID:11312261) UniProt PMID:11312261 NCBI chrNW_004936475:21,005,242...21,235,992
Ensembl chrNW_004936475:21,080,302...21,231,544 		JBrowse link
G Znf148 zinc finger protein 148 ISO RGD PMID:8943318 RGD:61784 NCBI chrNW_004936725:6,968...89,762
Ensembl chrNW_004936725:6,962...83,034 		JBrowse link
G Znf174 zinc finger protein 174 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:870,271...881,273
Ensembl chrNW_004936694:870,123...881,299 		JBrowse link
G Znf217 zinc finger protein 217 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:1,881,034...1,894,466
Ensembl chrNW_004936514:1,867,840...1,894,483 		JBrowse link
G Znf263 zinc finger protein 263 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:948,042...954,920
Ensembl chrNW_004936694:948,033...954,957 		JBrowse link
G Znf281 zinc finger protein 281 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:3,882,391...3,885,744
Ensembl chrNW_004936567:3,882,406...3,885,732 		JBrowse link
G Znf335 zinc finger protein 335 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,070,030...7,090,466
Ensembl chrNW_004936514:7,072,554...7,090,183 		JBrowse link
G Znf513 zinc finger protein 513 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,203,926...5,207,031
Ensembl chrNW_004936493:5,204,020...5,207,025 		JBrowse link
G Znf579 zinc finger protein 579 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936981:109,764...113,085
Ensembl chrNW_004936981:109,824...113,085 		JBrowse link
G Znf639 zinc finger protein 639 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,831,234...3,841,972
Ensembl chrNW_004936566:3,831,942...3,837,957 		JBrowse link
G Znf658 zinc finger protein 658 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:1,494,915...1,509,548
Ensembl chrNW_004936487:1,492,904...1,507,449 		JBrowse link
G Znf746 zinc finger protein 746 enables ISO (PMID:21376232) UniProt PMID:21376232 NCBI chrNW_004936527:5,481,178...5,500,116
Ensembl chrNW_004936527:5,479,883...5,498,687 		JBrowse link
cAMP response element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:12196528 GO_REF:0000107 GO_REF:0000118 RGD:727574 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936631:3,721,307...3,785,346
Ensembl chrNW_004936631:3,721,313...3,780,892 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3 like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936562:2,739,908...2,772,484
Ensembl chrNW_004936562:2,739,905...2,772,484 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3 like 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936592:2,302,921...2,413,486
Ensembl chrNW_004936592:2,308,156...2,413,510 		JBrowse link
G Creb5 cAMP responsive element binding protein 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:5,184,157...5,319,176
Ensembl chrNW_004936478:4,924,489...5,319,844 		JBrowse link
G E4f1 E4F transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,811,131...1,829,193
Ensembl chrNW_004936694:1,809,882...1,829,157 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Jdp2 Jun dimerization protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,523,879...4,553,028
Ensembl chrNW_004936488:4,523,888...4,553,117 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:3,034,364...3,037,632
Ensembl chrNW_004936522:3,035,346...3,036,350 		JBrowse link
G LOC101960773 cyclic AMP-dependent transcription factor ATF-7 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:10,780,826...10,884,806
Ensembl chrNW_004936512:10,785,763...10,884,795 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 enables ISO (MGI:5543879|PMID:23897430) UniProt PMID:23897430 MGI:5543879 NCBI chrNW_004936524:8,252,321...8,290,747
Ensembl chrNW_004936524:8,252,381...8,289,157 		JBrowse link
G Tcf12 transcription factor 12 ISO RGD PMID:7683670 RGD:729997 NCBI chrNW_004936471:18,223,221...18,576,922 JBrowse link
cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:3,737,908...3,783,492
Ensembl chrNW_004936546:3,737,851...3,783,588 		JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:1,038,420...1,093,319
Ensembl chrNW_004936580:1,036,973...1,082,984 		JBrowse link
G Atf2 activating transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443 		JBrowse link
G Ctcf CCCTC-binding factor enables ISO (PMID:28636939) MGI PMID:28636939 NCBI chrNW_004936475:17,987,137...18,031,733
Ensembl chrNW_004936475:17,987,156...18,031,760 		JBrowse link
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:21814290 RGD:9587757 NCBI chrNW_004936497:12,842,569...12,847,952
Ensembl chrNW_004936497:12,842,564...12,847,997 		JBrowse link
G Dmrt1 doublesex and mab-3 related transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:3,944,941...4,049,132
Ensembl chrNW_004936503:3,944,933...4,049,132 		JBrowse link
G E2f1 E2F transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026 		JBrowse link
G E2f2 E2F transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:8,719,243...8,739,811
Ensembl chrNW_004936474:8,719,253...8,737,763 		JBrowse link
G E2f3 E2F transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:5,712,247...5,783,643
Ensembl chrNW_004936552:5,711,923...5,783,694 		JBrowse link
G E2f7 E2F transcription factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936568:5,206,135...5,245,324
Ensembl chrNW_004936568:5,206,135...5,244,450 		JBrowse link
G E2f8 E2F transcription factor 8 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:322,863...339,365
Ensembl chrNW_004936654:322,863...338,699 		JBrowse link
G Ell elongation factor for RNA polymerase II enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:2,745,862...2,812,513
Ensembl chrNW_004936596:2,745,825...2,812,880 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936523:7,399,426...7,470,895
Ensembl chrNW_004936523:7,399,421...7,473,158 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:6,835,410...6,838,582
Ensembl chrNW_004936471:6,835,930...6,838,544 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:19057620 RGD:2311715 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138 		JBrowse link
G Epas1 endothelial PAS domain protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:5,855,748...5,938,879
Ensembl chrNW_004936508:5,855,732...5,938,856 		JBrowse link
G Esrrb estrogen related receptor beta enables ISO (MGI:5529430|PMID:23508100), (MGI:5887187|PMID:26206133) UniProt PMID:23508100 PMID:26206133 MGI:5529430 MGI:5887187 NCBI chrNW_004936488:5,350,133...5,452,366
Ensembl chrNW_004936488:5,292,466...5,454,689 		JBrowse link
G Foxn2 forkhead box N2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936508:4,233,575...4,283,845
Ensembl chrNW_004936508:4,233,574...4,283,971 		JBrowse link
G Foxn3 forkhead box N3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:16,560,732...16,828,972
Ensembl chrNW_004936488:16,554,925...16,934,125 		JBrowse link
G Foxn4 forkhead box N4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:1,061,907...1,081,350
Ensembl chrNW_004936769:1,062,061...1,080,444 		JBrowse link
G Gata1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:742,862...750,843
Ensembl chrNW_004936721:742,862...750,768 		JBrowse link
G Gata3 GATA binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gata4 GATA binding protein 4 enables ISO PMID:20855530 UniProt PMID:20855530 RGD:8554432 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Gata5 GATA binding protein 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,061,675...10,070,541
Ensembl chrNW_004936514:10,061,675...10,070,541 		JBrowse link
G Gata6 GATA binding protein 6 enables ISO PMID:20855530 UniProt PMID:20855530 RGD:8554432 NCBI chrNW_004936550:1,814,336...1,844,399
Ensembl chrNW_004936550:1,814,336...1,844,399 		JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936871:666,961...670,910
Ensembl chrNW_004936871:666,938...670,916 		JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936639:3,705,225...3,714,696
Ensembl chrNW_004936639:3,703,447...3,716,820 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:24,795,854...24,803,138
Ensembl chrNW_004936476:24,795,877...24,801,567 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS
IEA		 AgBase
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936516:4,536,664...4,539,331
Ensembl chrNW_004936516:4,534,306...4,539,387 		JBrowse link
G Hnf1b HNF1 homeobox B enables ISO
IEA		 RGD
Ensembl		 PMID:1673926 GO_REF:0000107 RGD:729944 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO RGD PMID:16640558 RGD:12904755 NCBI chrNW_004936530:2,401,053...2,425,989
Ensembl chrNW_004936530:2,401,043...2,454,466 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720 		JBrowse link
G Hoxa13 homeobox A13 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:3,824,715...3,827,277
Ensembl chrNW_004936478:3,824,715...3,827,277 		JBrowse link
G Hoxd13 homeobox D13 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:5,579,846...5,581,651
Ensembl chrNW_004936509:5,579,843...5,581,651 		JBrowse link
G Irf4 interferon regulatory factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936633:1,565,293...1,580,859
Ensembl chrNW_004936633:1,564,637...1,580,859 		JBrowse link
G Irf7 interferon regulatory factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936888:445,340...448,801
Ensembl chrNW_004936888:445,549...448,392 		JBrowse link
G Isl1 ISL LIM homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936480:15,805,259...15,817,854
Ensembl chrNW_004936480:15,805,247...15,817,854 		JBrowse link
G Isl2 ISL LIM homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:35,840,202...35,845,822
Ensembl chrNW_004936471:35,840,214...35,845,848 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469 		JBrowse link
G Lhx1 LIM homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G LOC101965998 notch receptor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:454,273...539,544
Ensembl chrNW_004936872:390,852...536,321 		JBrowse link
G LOC101966497 forkhead box protein N3-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936778:1,495,013...1,496,470 JBrowse link
G Mef2c myocyte enhancer factor 2C enables ISO (PMID:16140986), (PMID:20399744) MGI PMID:16140986 PMID:20399744 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,533,264...15,534,576
Ensembl chrNW_004936483:15,533,522...15,534,576 		JBrowse link
G Mixl1 Mix paired-like homeobox enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:2,984,900...2,989,494
Ensembl chrNW_004936526:2,984,907...2,987,893 		JBrowse link
G Msx1 msh homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:17,406,551...17,413,615
Ensembl chrNW_004936477:17,409,191...17,412,919 		JBrowse link
G Mtf1 metal regulatory transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,981,483...20,027,541
Ensembl chrNW_004936474:19,981,466...20,027,536 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor enables ISO (PMID:15511642) MGI PMID:15511642 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Myod1 myogenic differentiation 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:1,407,187...1,409,683
Ensembl chrNW_004936528:1,407,661...1,409,573 		JBrowse link
G Myog myogenin enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:1,507,042...1,509,814
Ensembl chrNW_004936567:1,507,042...1,509,815 		JBrowse link
G Myt1 myelin transcription factor 1 enables ISO (PMID:17442045) MGI PMID:17442045 NCBI chrNW_004936514:11,305,929...11,367,935
Ensembl chrNW_004936514:11,308,071...11,368,801 		JBrowse link
G Nfe2 nuclear factor, erythroid 2 contributes_to
enables		 ISO
IEA		 (PMID:16263792) GO_Central
Ensembl		 PMID:16263792 GO_REF:0000107 NCBI chrNW_004936512:11,490,521...11,493,655
Ensembl chrNW_004936512:11,490,168...11,493,974 		JBrowse link
G Nfic nuclear factor I C ISO RGD PMID:10521600 RGD:633408 NCBI chrNW_004936588:1,928,661...1,963,525
Ensembl chrNW_004936588:1,928,493...1,963,502 		JBrowse link
G Nkx2-2 NK2 homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936620:3,961,106...3,962,910
Ensembl chrNW_004936620:3,961,106...3,969,503 		JBrowse link
G Notch1 notch receptor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428 		JBrowse link
G Notch4 notch receptor 4 enables ISO (PMID:18239137) BHF-UCL PMID:18239137 NCBI chrNW_004936727:1,386,842...1,409,823 JBrowse link
G Nr1d2 nuclear receptor subfamily 1 group D member 2 enables ISO (MGI:5526909|PMID:23221024), (MGI:5526936|PMID:19682428)
(PMID:19682428), (PMID:23221024)		 UniProt PMID:19682428 PMID:23221024 MGI:5526909 MGI:5526936 NCBI chrNW_004936473:15,624,597...15,646,875 JBrowse link
G Pax2 paired box 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (MGI:5490149|PMID:23495099) AgBase PMID:23495099 MGI:5490149 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Runx2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157 		JBrowse link
G Sall1 spalt like transcription factor 1 enables ISO (MGI:4946171|PMID:21062744) BHF-UCL PMID:21062744 MGI:4946171 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
G Scx scleraxis bHLH transcription factor enables ISO (PMID:17430895) MGI PMID:17430895 NCBI chrNW_004936470:7,966,096...7,972,379 JBrowse link
G Smad3 SMAD family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Sox11 SRY-box transcription factor 11 enables ISO (MGI:5285123|PMID:21527504), (MGI:5285167|PMID:19808959)
(PMID:19808959), (PMID:21527504)		 UniProt PMID:19808959 PMID:21527504 MGI:5285123 MGI:5285167 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Sox5 SRY-box transcription factor 5 enables ISO PMID:26150426 UniProt PMID:26150426 RGD:11526869 NCBI chrNW_004936548:3,213,305...3,599,876
Ensembl chrNW_004936548:3,213,466...3,599,425 		JBrowse link
G Sox6 SRY-box transcription factor 6 enables ISO PMID:26150426 UniProt PMID:26150426 RGD:11526869 NCBI chrNW_004936528:2,331,706...2,912,423
Ensembl chrNW_004936528:2,331,661...2,906,082 		JBrowse link
G Sox8 SRY-box transcription factor 8 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:128,386...132,648
Ensembl chrNW_004936501:127,703...132,704 		JBrowse link
G Sox9 SRY-box transcription factor 9 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Sp1 Sp1 transcription factor enables ISO (PMID:15511642), (PMID:19943855), (PMID:9705320) MGI PMID:9705320 PMID:15511642 PMID:19943855 NCBI chrNW_004936512:10,655,116...10,693,025
Ensembl chrNW_004936512:10,655,349...10,693,042 		JBrowse link
G Sp3 Sp3 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:3,740,393...3,782,873
Ensembl chrNW_004936509:3,741,836...3,793,136 		JBrowse link
G Spi1 Spi-1 proto-oncogene enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,852,759...1,870,647
Ensembl chrNW_004936562:1,852,740...1,870,472 		JBrowse link
G Srf serum response factor enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936476:16,779,941...16,789,499
Ensembl chrNW_004936476:16,782,233...16,789,130 		JBrowse link
G Tbx19 T-box transcription factor 19 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:17,990,435...18,013,180
Ensembl chrNW_004936481:17,990,435...18,013,193 		JBrowse link
G Tcf3 transcription factor 3 enables ISO (PMID:16140986) MGI PMID:16140986 NCBI chrNW_004936588:884,817...913,052
Ensembl chrNW_004936588:884,789...912,753 		JBrowse link
G Tfap2a transcription factor AP-2 alpha enables ISO (PMID:19943855) MGI PMID:19943855 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
G Tfap2b transcription factor AP-2 beta enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:9,855,992...9,884,788
Ensembl chrNW_004936476:9,857,773...9,884,784 		JBrowse link
G Tfcp2 transcription factor CP2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:8,718,578...8,786,957
Ensembl chrNW_004936512:8,716,042...8,787,201 		JBrowse link
G Tfdp1 transcription factor Dp-1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:184,808...214,628
Ensembl chrNW_004936472:184,786...214,630 		JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:3,683,972...3,712,081
Ensembl chrNW_004936519:3,684,515...3,712,081 		JBrowse link
G Tp53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
G Uhrf1 ubiquitin like with PHD and ring finger domains 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,863,651...2,890,116
Ensembl chrNW_004936588:2,862,367...2,888,946 		JBrowse link
G Xbp1 X-box binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,891,171...2,895,409
Ensembl chrNW_004936657:2,891,907...2,896,174 		JBrowse link
G Yy1 YY1 transcription factor enables ISO (PMID:15329343)
(PMID:16260628)		 AgBase
UniProt		 PMID:15329343 PMID:16260628 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
G Yy2 YY2 transcription factor enables ISO (PMID:16260628)
(MGI:3607410|PMID:16260628)		 UniProt PMID:16260628 MGI:3607410 NCBI chrNW_004936624:2,487,983...2,489,630 JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163 		JBrowse link
G Znf322 zinc finger protein 322 enables ISO (MGI:6114965|PMID:24550733)
(PMID:24550733)		 UniProt PMID:24550733 MGI:6114965 NCBI chrNW_004936671:2,284,119...2,315,994 JBrowse link
G Znf395 zinc finger protein 395 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:1,141,169...1,162,394
Ensembl chrNW_004936675:1,141,145...1,152,564 		JBrowse link
G Znf516 zinc finger protein 516 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936616:2,451,952...2,553,843
Ensembl chrNW_004936616:2,452,248...2,553,693 		JBrowse link
G Znf595 zinc finger protein 595 enables ISO (PMID:22801370) MGI PMID:22801370 NCBI chrNW_004938658:3,888...5,370 JBrowse link
G Znf704 zinc finger protein 704 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936656:3,207,362...3,416,202
Ensembl chrNW_004936656:3,224,420...3,404,255 		JBrowse link
core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:10,641,109...10,690,587
Ensembl chrNW_004936470:10,628,128...10,680,106 		JBrowse link
G Foxp1 forkhead box P1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:2,631,781...3,146,104
Ensembl chrNW_004936603:2,632,274...2,830,324 		JBrowse link
G Hdac1 histone deacetylase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,320,635...15,351,418
Ensembl chrNW_004936474:15,320,729...15,350,860 		JBrowse link
G Isl1 ISL LIM homeobox 1 ISO RGD PMID:11043578 RGD:8554127 NCBI chrNW_004936480:15,805,259...15,817,854
Ensembl chrNW_004936480:15,805,247...15,817,854 		JBrowse link
G Jph2 junctophilin 2 enables ISO (MGI:6270069|PMID:30409805) UniProt PMID:30409805 MGI:6270069 NCBI chrNW_004936530:2,570,365...2,606,743 JBrowse link
G Kcnip3 potassium voltage-gated channel interacting protein 3 enables ISO (MGI:5882899|PMID:15746104)
(PMID:15746104)		 CAFA PMID:15746104 MGI:5882899 NCBI chrNW_004936744:91,833...167,214
Ensembl chrNW_004936744:91,831...167,811 		JBrowse link
G Klf10 KLF transcription factor 10 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:40,980,487...40,986,880
Ensembl chrNW_004936470:40,980,487...40,986,885 		JBrowse link
G LOC101975448 protein argonaute-1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,398,996...18,436,001
Ensembl chrNW_004936474:18,399,011...18,436,001 		JBrowse link
G Mmp12 matrix metallopeptidase 12 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,107,567...5,117,843
Ensembl chrNW_004936551:5,106,285...5,117,843 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Nkx2-1 NK2 homeobox 1 enables ISO PMID:9425125 CAFA PMID:9425125 RGD:12792996 NCBI chrNW_004936494:10,517,488...10,520,567
Ensembl chrNW_004936494:10,517,488...10,520,566 		JBrowse link
G Npm1 nucleophosmin 1 enables ISO (PMID:19160485) CAFA PMID:19160485 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:10,960,069...11,056,834
Ensembl chrNW_004936504:10,959,192...11,056,856 		JBrowse link
G Polr2a RNA polymerase II subunit A enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:755,585...781,692
Ensembl chrNW_004936595:755,535...781,783 		JBrowse link
G Snapc3 small nuclear RNA activating complex polypeptide 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936539:8,861,436...8,893,555
Ensembl chrNW_004936539:8,861,422...8,891,614 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 contributes_to
enables		 ISO
IEA		 (PMID:15601843) GO_Central
Ensembl		 PMID:15601843 GO_REF:0000107 NCBI chrNW_004936514:9,694,509...9,722,101
Ensembl chrNW_004936514:9,694,509...9,722,107 		JBrowse link
G Tbp TATA-box binding protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:46,572...65,304
Ensembl chrNW_004937098:46,248...65,441 		JBrowse link
G Tp53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,535,351...3,563,664
Ensembl chrNW_004936474:3,537,043...3,563,770 		JBrowse link
E-box binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor enables ISO (MGI:4820700|PMID:20106950)
(PMID:20106950)		 UniProt PMID:20106950 MGI:4820700 NCBI chrNW_004936546:3,737,908...3,783,492
Ensembl chrNW_004936546:3,737,851...3,783,588 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:11,315,929...11,317,166
Ensembl chrNW_004936492:11,316,417...11,317,166 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936687:1,435,977...1,437,138
Ensembl chrNW_004936687:1,436,009...1,437,067 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936521:10,038,345...10,039,345
Ensembl chrNW_004936521:10,038,765...10,039,223 		JBrowse link
G Atoh8 atonal bHLH transcription factor 8 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936712:1,529,508...1,552,148
Ensembl chrNW_004936712:1,529,420...1,552,185 		JBrowse link
G Bhlha15 basic helix-loop-helix family member a15 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936750:752,887...756,562
Ensembl chrNW_004936750:753,615...754,187 		JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,316,099...4,321,193
Ensembl chrNW_004936577:4,315,977...4,322,032 		JBrowse link
G Bhlhe41 basic helix-loop-helix family member e41 enables ISO (PMID:14672706), (PMID:15193144)
(MGI:2388855|PMID:12397359), (MGI:5297789|PMID:15147242), (MGI:5297791|PMID:12657651), (MGI:5306297|PMID:17487425)		 BHF-UCL PMID:12397359 PMID:12657651 PMID:14672706 PMID:15147242 PMID:15193144 More... MGI:2388855 MGI:5297789 MGI:5297791 MGI:5306297 NCBI chrNW_004936548:1,306,939...1,314,678 JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:5,167,611...5,239,128
Ensembl chrNW_004936528:5,164,481...5,239,128 		JBrowse link
G Bmal2 basic helix-loop-helix ARNT like 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936548:181,793...241,050
Ensembl chrNW_004936548:182,075...225,856 		JBrowse link
G Ciart circadian associated repressor of transcription enables ISO (MGI:5568140|PMID:24736997) UniProt PMID:24736997 MGI:5568140 NCBI chrNW_004936580:566,745...571,160 JBrowse link
G Clock clock circadian regulator enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,929,138...7,994,797
Ensembl chrNW_004936492:7,929,138...7,995,579 		JBrowse link
G Figla folliculogenesis specific bHLH transcription factor contributes_to
enables		 ISO
IEA		 (PMID:15044608) UniProt
Ensembl		 PMID:15044608 GO_REF:0000107 NCBI chrNW_004936491:14,979,097...14,993,315
Ensembl chrNW_004936491:14,988,269...14,993,315 		JBrowse link
G Gata3 GATA binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 contributes_to
enables		 ISO
IEA		 (MGI:4362015|PMID:11812799)
(PMID:11812799)		 BHF-UCL
Ensembl		 PMID:11812799 GO_REF:0000107 MGI:4362015 NCBI chrNW_004936516:4,692,926...4,695,625
Ensembl chrNW_004936516:4,692,926...4,695,632 		JBrowse link
G Hdac1 histone deacetylase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,320,635...15,351,418
Ensembl chrNW_004936474:15,320,729...15,350,860 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:19670267 GO_REF:0000107 GO_REF:0000118 RGD:9685170 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G Max MYC associated factor X enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,728,941...8,755,742
Ensembl chrNW_004936495:8,728,940...8,755,799 		JBrowse link
G Mitf melanocyte inducing transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:1,682,411...1,858,295
Ensembl chrNW_004936603:1,682,513...1,858,173 		JBrowse link
G Mybbp1a MYB binding protein 1a enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:1,095,022...1,108,545
Ensembl chrNW_004936677:1,095,420...1,108,496 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Myod1 myogenic differentiation 1 enables ISO
IEA		 RGD
Ensembl		 PMID:11600477 GO_REF:0000107 RGD:9686083 NCBI chrNW_004936528:1,407,187...1,409,683
Ensembl chrNW_004936528:1,407,661...1,409,573 		JBrowse link
G Myog myogenin enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:1,507,042...1,509,814
Ensembl chrNW_004936567:1,507,042...1,509,815 		JBrowse link
G Neurod1 neuronal differentiation 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936509:10,421,821...10,425,927
Ensembl chrNW_004936509:10,423,126...10,424,196 		JBrowse link
G Neurod2 neuronal differentiation 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:14,801,636...14,803,437
Ensembl chrNW_004936490:14,802,275...14,803,423 		JBrowse link
G Neurod4 neuronal differentiation 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936891:471,576...482,195
Ensembl chrNW_004936891:474,111...482,095 		JBrowse link
G Neurod6 neuronal differentiation 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:7,524,912...7,528,395
Ensembl chrNW_004936478:7,524,912...7,528,395 		JBrowse link
G Neurog1 neurogenin 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936597:2,708,001...2,709,702
Ensembl chrNW_004936597:2,708,691...2,709,425 		JBrowse link
G Neurog2 neurogenin 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936563:3,348,052...3,350,623
Ensembl chrNW_004936563:3,348,052...3,350,623 		JBrowse link
G Neurog3 neurogenin 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936521:8,932,998...8,933,645
Ensembl chrNW_004936521:8,932,998...8,933,645 		JBrowse link
G Npas2 neuronal PAS domain protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:96,312...176,395
Ensembl chrNW_004936661:95,752...210,097 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867 		JBrowse link
G Olig1 oligodendrocyte transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936500:9,208,932...9,211,182
Ensembl chrNW_004936500:9,210,303...9,211,097 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936500:9,244,595...9,247,756
Ensembl chrNW_004936500:9,245,880...9,247,756 		JBrowse link
G Olig3 oligodendrocyte transcription factor 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:4,793,595...4,795,781
Ensembl chrNW_004936560:4,794,747...4,795,565 		JBrowse link
G Per1 period circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,366,883...1,382,138
Ensembl chrNW_004936595:1,366,875...1,382,170 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma enables ISO (MGI:3830801|PMID:19041764)
(PMID:19041764)		 UniProt PMID:19041764 MGI:3830801 NCBI chrNW_004936602:1,230,907...1,368,588
Ensembl chrNW_004936602:1,230,907...1,304,743 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 enables ISO (MGI:5464222|PMID:23133559) UniProt PMID:23133559 MGI:5464222 NCBI chrNW_004936722:1,379,515...1,388,538
Ensembl chrNW_004936722:1,379,515...1,388,546 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:4,978,896...4,980,648
Ensembl chrNW_004936520:4,978,896...4,980,648 		JBrowse link
G Scx scleraxis bHLH transcription factor contributes_to
enables		 ISO (PMID:10775504)
(MGI:4418577|PMID:20059955), (MGI:72077|PMID:7743923)
(MGI:5294531|PMID:19828133)		 UniProtKB
UniProt		 PMID:7743923 PMID:10775504 PMID:19828133 PMID:20059955 MGI:4418577 MGI:5294531 MGI:72077 NCBI chrNW_004936470:7,966,096...7,972,379 JBrowse link
G Snai1 snail family transcriptional repressor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:4,456,498...4,462,436
Ensembl chrNW_004936514:4,456,484...4,462,987 		JBrowse link
G Snai2 snail family transcriptional repressor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:3,813,916...3,817,642
Ensembl chrNW_004936590:3,813,888...3,817,642 		JBrowse link
G Spz1 spermatogenic leucine zipper 1 enables ISO (PMID:30541061) MGI PMID:30541061 NCBI chrNW_004936549:8,019,767...8,020,915 JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 enables ISO (PMID:15358760) BHF-UCL PMID:15358760 NCBI chrNW_004936492:115,923...174,614
Ensembl chrNW_004936492:115,821...174,775 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:28,049,326...28,061,495
Ensembl chrNW_004936474:28,047,808...28,056,065 		JBrowse link
G Tcf12 transcription factor 12 enables ISO (MGI:3789797|PMID:18214987) UniProt PMID:18214987 MGI:3789797 NCBI chrNW_004936471:18,223,221...18,576,922 JBrowse link
G Tcf21 transcription factor 21 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:1,733,903...1,736,895
Ensembl chrNW_004936560:1,733,903...1,736,890 		JBrowse link
G Tcf3 transcription factor 3 contributes_to
enables		 ISO
IEA		 PMID:19828133
(PMID:15044608)
(MGI:4362015|PMID:11812799)
(PMID:10775504)		 UniProt
Ensembl
BHF-UCL
UniProtKB		 PMID:10775504 PMID:11812799 PMID:15044608 PMID:19828133 GO_REF:0000107 MGI:4362015 RGD:8553796 NCBI chrNW_004936588:884,817...913,052
Ensembl chrNW_004936588:884,789...912,753 		JBrowse link
G Tcf4 transcription factor 4 enables ISO (MGI:3789797|PMID:18214987), (MGI:85411|PMID:8978694) BHF-UCL PMID:8978694 PMID:18214987 MGI:3789797 MGI:85411 NCBI chrNW_004936497:8,410,882...8,765,678
Ensembl chrNW_004936497:8,410,860...8,764,296 		JBrowse link
G Tfap4 transcription factor AP-4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:210,863...222,531
Ensembl chrNW_004936694:210,672...222,619 		JBrowse link
G Tfe3 transcription factor binding to IGHM enhancer 3 enables ISO (MGI:7510300|PMID:20713358) UniProt PMID:20713358 MGI:7510300 NCBI chrNW_004936721:933,572...945,717
Ensembl chrNW_004936721:933,404...945,725 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:17,643...175,762
Ensembl chrNW_004936574:17,684...178,293 		JBrowse link
estrogen response element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936635:485,903...647,820
Ensembl chrNW_004936635:485,903...647,932 		JBrowse link
G Esr1 estrogen receptor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936489:4,616,839...4,887,179
Ensembl chrNW_004936489:4,614,754...4,887,171 		JBrowse link
G Esr2 estrogen receptor 2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:9600083 GO_REF:0000107 GO_REF:0000118 RGD:728646 NCBI chrNW_004936495:7,956,168...8,018,356
Ensembl chrNW_004936495:7,956,766...8,004,357 		JBrowse link
G Esrra estrogen related receptor alpha enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,898,534...4,922,758
Ensembl chrNW_004936599:4,897,066...4,904,886 		JBrowse link
G Esrrb estrogen related receptor beta enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:5,350,133...5,452,366
Ensembl chrNW_004936488:5,292,466...5,454,689 		JBrowse link
G Esrrg estrogen related receptor gamma enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936628:1,635,161...2,058,198
Ensembl chrNW_004936628:1,830,881...2,058,269 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:10,960,069...11,056,834
Ensembl chrNW_004936504:10,959,192...11,056,856 		JBrowse link
G Nr3c2 nuclear receptor subfamily 3 group C member 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936535:1,139,687...1,467,469
Ensembl chrNW_004936535:1,140,178...1,467,471 		JBrowse link
G Pgr progesterone receptor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:6,498,553...6,573,212
Ensembl chrNW_004936551:6,498,553...6,573,222 		JBrowse link
G Trim24 tripartite motif containing 24 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:2,902,805...2,962,602
Ensembl chrNW_004936592:2,863,743...2,963,977 		JBrowse link
intronic transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,856,683...41,961,666
Ensembl chrNW_004936470:41,859,035...42,002,844 		JBrowse link
G Nkx2-1 NK2 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:10,517,488...10,520,567
Ensembl chrNW_004936494:10,517,488...10,520,566 		JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:20368265 RGD:2324624 NCBI chrNW_004936490:15,188,341...15,206,032
Ensembl chrNW_004936490:15,193,150...15,206,784 		JBrowse link
mitochondrial promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lonp1 lon peptidase 1, mitochondrial NOT|enables ISO
IEA		 (PMID:9485316)
(PMID:12657466)		 UniProt
MGI
Ensembl		 PMID:9485316 PMID:12657466 GO_REF:0000107 NCBI chrNW_004936588:3,265,344...3,287,035
Ensembl chrNW_004936588:3,265,512...3,287,181 		JBrowse link
G Polrmt RNA polymerase mitochondrial enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:209,720...221,847
Ensembl chrNW_004936588:209,610...221,905 		JBrowse link
G Tfam transcription factor A, mitochondrial enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936614:4,595,973...4,605,040
Ensembl chrNW_004936614:4,596,617...4,605,104 		JBrowse link
N-box binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 enables ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:22302822 GO_REF:0000107 GO_REF:0000118 RGD:9685391 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622 		JBrowse link
purine-rich negative regulatory element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elk3 ETS transcription factor ELK3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936507:12,244,163...12,307,621
Ensembl chrNW_004936507:12,244,163...12,307,623 		JBrowse link
G Pura purine rich element binding protein A enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:9,129,024...9,134,916
Ensembl chrNW_004936531:9,129,715...9,130,515 		JBrowse link
G Purb purine rich element binding protein B enables ISO PMID:12933792 HGNC-UCL PMID:12933792 RGD:1581942 NCBI chrNW_004936478:19,738,252...19,747,345 JBrowse link
G Purg purine rich element binding protein G enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936792:824,162...861,943
Ensembl chrNW_004936792:824,276...861,882 		JBrowse link
retinoic acid-responsive element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myt1l myelin transcription factor 1 like enables ISO PMID:10606515 RGD
CAFA		 PMID:8631881 PMID:10606515 RGD:12793025 RGD:633486 NCBI chrNW_004936532:557,680...916,082
Ensembl chrNW_004936532:560,327...688,232 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 ISO RGD PMID:7797489 RGD:633499 NCBI chrNW_004936523:9,508,204...9,517,266
Ensembl chrNW_004936523:9,507,965...9,517,272 		JBrowse link
G Rara retinoic acid receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,376,217...15,420,638
Ensembl chrNW_004936490:15,376,205...15,421,611 		JBrowse link
G Rxra retinoid X receptor alpha enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936669:2,735,111...2,763,060
Ensembl chrNW_004936669:2,738,448...2,763,070 		JBrowse link
G Rxrb retinoid X receptor beta enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:25,655,164...25,662,369
Ensembl chrNW_004936476:25,655,209...25,662,416 		JBrowse link
G Rxrg retinoid X receptor gamma enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936481:19,789,753...19,826,665
Ensembl chrNW_004936481:19,789,641...19,826,698 		JBrowse link
G Znf536 zinc finger protein 536 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:4,768,842...5,201,254
Ensembl chrNW_004936570:4,909,567...5,144,970 		JBrowse link
RNA polymerase I cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pih1d1 PIH1 domain containing 1 NOT|enables ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004936664:3,321,278...3,326,720
Ensembl chrNW_004936664:3,321,136...3,326,093 		JBrowse link
G Ubtf upstream binding transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:671,178...687,485
Ensembl chrNW_004936541:671,157...684,240 		JBrowse link
RNA polymerase I core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A contributes_to ISO (PMID:22368283) GO_Central PMID:22368283 NCBI chrNW_004936646:914,944...949,057
Ensembl chrNW_004936646:914,818...949,101 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:2,893,304...2,926,795
Ensembl chrNW_004936501:2,893,298...2,926,804 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 contributes_to
enables		 ISO
IEA		 (PMID:22368283) GO_Central
Ensembl		 PMID:22368283 GO_REF:0000107 NCBI chrNW_004936659:1,152,846...1,246,718
Ensembl chrNW_004936659:1,169,792...1,249,213 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 contributes_to
enables		 ISO
IEA		 (PMID:22368283) GO_Central
Ensembl		 PMID:22368283 GO_REF:0000107 NCBI chrNW_004936619:1,276,239...1,308,945
Ensembl chrNW_004936619:1,275,362...1,308,913 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936532:6,118,241...6,194,506
Ensembl chrNW_004936532:6,117,864...6,184,138 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase I subunit C enables ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004936641:3,649,177...3,653,798 JBrowse link
G Tbp TATA-box binding protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:46,572...65,304
Ensembl chrNW_004937098:46,248...65,441 		JBrowse link
G Ubtf upstream binding transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:671,178...687,485
Ensembl chrNW_004936541:671,157...684,240 		JBrowse link
RNA polymerase I transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpa CCAAT enhancer binding protein alpha enables ISO (PMID:20075868) UniProt PMID:20075868 NCBI chrNW_004936570:2,513,561...2,516,213 JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936640:1,549,977...1,787,436
Ensembl chrNW_004936640:1,550,167...1,787,286 		JBrowse link
G Ar androgen receptor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:485,903...647,820
Ensembl chrNW_004936635:485,903...647,932 		JBrowse link
G Arid3c AT-rich interaction domain 3C enables ISO (MGI:5295129|PMID:21955986) NTNU_SB PMID:21955986 MGI:5295129 NCBI chrNW_004936524:2,705,112...2,711,557
Ensembl chrNW_004936524:2,705,121...2,711,557 		JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:1,038,420...1,093,319
Ensembl chrNW_004936580:1,036,973...1,082,984 		JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936483:20,041,712...20,218,853
Ensembl chrNW_004936483:20,041,657...20,218,965 		JBrowse link
G Arx aristaless related homeobox enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936836:295,090...306,756
Ensembl chrNW_004936836:295,664...306,756 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:11,315,929...11,317,166
Ensembl chrNW_004936492:11,316,417...11,317,166 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139 		JBrowse link
G Ascl5 achaete-scute family bHLH transcription factor 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:3,267,224...3,267,841
Ensembl chrNW_004936567:3,267,224...3,267,829 		JBrowse link
G Atf1 activating transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:8,379,802...8,426,574
Ensembl chrNW_004936512:8,379,797...8,426,186 		JBrowse link
G Atf2 activating transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443 		JBrowse link
G Atf3 activating transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936557:909,302...922,619
Ensembl chrNW_004936557:908,318...922,624 		JBrowse link
G Atf4 activating transcription factor 4 enables
contributes_to		 IEA
ISO		 (PMID:27812542) Ensembl
MGI		 PMID:27812542 GO_REF:0000107 NCBI chrNW_004936492:2,114,478...2,115,969
Ensembl chrNW_004936492:2,110,634...2,115,996 		JBrowse link
G Atf6 activating transcription factor 6 enables ISO (PMID:24269637) NTNU_SB PMID:24269637 NCBI chrNW_004937131:170,649...183,942 JBrowse link
G Atf6b activating transcription factor 6 beta contributes_to
enables		 ISO
IEA		 (PMID:11256944) NTNU_SB
TreeGrafter
Ensembl		 PMID:11256944 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936727:1,476,061...1,487,353
Ensembl chrNW_004936727:1,475,863...1,491,172 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:1,435,977...1,437,138
Ensembl chrNW_004936687:1,436,009...1,437,067 		JBrowse link
G Bach1 BTB domain and CNC homolog 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936500:12,720,027...12,740,717
Ensembl chrNW_004936500:12,717,516...12,740,656 		JBrowse link
G Bach2 BTB domain and CNC homolog 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936510:2,041,004...2,375,215
Ensembl chrNW_004936510:2,299,831...2,371,544 		JBrowse link
G Batf basic leucine zipper ATF-like transcription factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283 		JBrowse link
G Batf2 basic leucine zipper ATF-like transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,352,270...4,358,658
Ensembl chrNW_004936599:4,352,199...4,358,662 		JBrowse link
G Batf3 basic leucine zipper ATF-like transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936557:837,023...850,316
Ensembl chrNW_004936557:837,001...850,320 		JBrowse link
G Bcl11a BCL11 transcription factor A enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:6,021,340...6,118,103
Ensembl chrNW_004936491:6,021,343...6,118,568 		JBrowse link
G Bcl11b BCL11 transcription factor B enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936604:3,023,781...3,110,104
Ensembl chrNW_004936604:3,023,844...3,110,083 		JBrowse link
G Bcl6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071 		JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936577:4,316,099...4,321,193
Ensembl chrNW_004936577:4,315,977...4,322,032 		JBrowse link
G Bhlhe41 basic helix-loop-helix family member e41 enables ISO (MGI:5297789|PMID:15147242), (MGI:5297791|PMID:12657651) BHF-UCL PMID:12657651 PMID:15147242 MGI:5297789 MGI:5297791 NCBI chrNW_004936548:1,306,939...1,314,678 JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936528:5,167,611...5,239,128
Ensembl chrNW_004936528:5,164,481...5,239,128 		JBrowse link
G Bmal2 basic helix-loop-helix ARNT like 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936548:181,793...241,050
Ensembl chrNW_004936548:182,075...225,856 		JBrowse link
G Bptf bromodomain PHD finger transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936541:5,261,899...5,396,930
Ensembl chrNW_004936541:5,262,773...5,395,519 		JBrowse link
G Calcoco1 calcium binding and coiled-coil domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:10,947,826...10,964,372
Ensembl chrNW_004936512:10,947,681...10,964,431 		JBrowse link
G Carf calcium responsive transcription factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936726:1,958,561...2,010,972
Ensembl chrNW_004936726:1,922,060...2,010,981 		JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:2,611,621...2,627,071
Ensembl chrNW_004936659:2,613,365...2,626,666 		JBrowse link
G Cc2d1b coiled-coil and C2 domain containing 1B enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936522:8,613,766...8,644,714
Ensembl chrNW_004936522:8,615,459...8,645,795 		JBrowse link
G Cdk9 cyclin dependent kinase 9 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796 		JBrowse link
G Cdx1 caudal type homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:4,736,621...4,752,354
Ensembl chrNW_004936504:4,736,666...4,752,260 		JBrowse link
G Cdx2 caudal type homeobox 2 enables ISO (PMID:15677472)
(MGI:6695858|PMID:9933478), (MGI:6695963|PMID:9512360)		 NTNU_SB
UniProt		 PMID:9512360 PMID:9933478 PMID:15677472 MGI:6695858 MGI:6695963 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Cdx4 caudal type homeobox 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:297,112...305,506
Ensembl chrNW_004936683:297,112...305,506 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha enables ISO PMID:8572170
(MGI:5572903|PMID:10233885)		 NTNU_SB PMID:8572170 PMID:10233885 MGI:5572903 RGD:8661634 NCBI chrNW_004936570:2,513,561...2,516,213 JBrowse link
G Cebpd CCAAT enhancer binding protein delta enables ISO PMID:8572170
(MGI:5572879|PMID:15833715)		 NTNU_SB PMID:8572170 PMID:15833715 MGI:5572879 RGD:8661634 NCBI chrNW_004936590:4,919,862...4,920,612 JBrowse link
G Cebpe CCAAT enhancer binding protein epsilon enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936722:1,207,718...1,209,482
Ensembl chrNW_004936722:1,207,743...1,209,482 		JBrowse link
G Cebpg CCAAT enhancer binding protein gamma enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936570:2,435,672...2,439,056
Ensembl chrNW_004936570:2,438,187...2,438,639 		JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:9,803,887...9,931,132
Ensembl chrNW_004936483:9,803,623...9,931,272 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:12,381,225...12,505,121
Ensembl chrNW_004936496:12,381,126...12,505,150 		JBrowse link
G Ciart circadian associated repressor of transcription enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936580:566,745...571,160 JBrowse link
G Clock clock circadian regulator enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:3,721,307...3,785,346
Ensembl chrNW_004936631:3,721,313...3,780,892 		JBrowse link
G Creb3 cAMP responsive element binding protein 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:3,727,104...3,730,962
Ensembl chrNW_004936524:3,727,098...3,730,975 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3 like 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:2,302,921...2,413,486
Ensembl chrNW_004936592:2,308,156...2,413,510 		JBrowse link
G Creb3l3 cAMP responsive element binding protein 3 like 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:2,378,802...2,386,490
Ensembl chrNW_004936588:2,378,802...2,386,431 		JBrowse link
G Creb3l4 cAMP responsive element binding protein 3 like 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936580:3,715,122...3,720,154
Ensembl chrNW_004936580:3,715,027...3,724,282 		JBrowse link
G Crem cAMP responsive element modulator enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936574:3,478,969...3,546,738
Ensembl chrNW_004936574:3,479,060...3,548,951 		JBrowse link
G Ctcf CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,987,137...18,031,733
Ensembl chrNW_004936475:17,987,156...18,031,760 		JBrowse link
G Ctcfl CCCTC-binding factor like enables ISO (PMID:16140944) NTNU_SB PMID:16140944 NCBI chrNW_004936530:312,630...335,929 JBrowse link
G Cux1 cut like homeobox 1 enables ISO (PMID:18836447) MGI PMID:18836447 NCBI chrNW_004936543:1,482,606...1,781,294
Ensembl chrNW_004936543:1,485,970...1,796,070 		JBrowse link
G Cux2 cut like homeobox 2 enables ISO (MGI:3531237|PMID:15656993) NTNU_SB PMID:15656993 MGI:3531237 NCBI chrNW_004936558:3,970,114...4,060,326 JBrowse link
G Dach1 dachshund family transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936511:8,899,245...9,253,024
Ensembl chrNW_004936511:9,061,676...9,253,486 		JBrowse link
G Dach2 dachshund family transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936547:6,618,236...7,109,458
Ensembl chrNW_004936547:6,618,469...7,109,019 		JBrowse link
G Dbp D-box binding PAR bZIP transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936664:2,676,754...2,682,425
Ensembl chrNW_004936664:2,676,754...2,682,425 		JBrowse link
G Ddit3 DNA damage inducible transcript 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:1,665,019...1,669,212 JBrowse link
G Ddn dendrin enables ISO PMID:21911934 MGI PMID:21911934 RGD:8554331 NCBI chrNW_004936512:6,796,807...6,800,886
Ensembl chrNW_004936512:6,796,797...6,800,886 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:1,946,684...1,987,036
Ensembl chrNW_004936519:1,946,652...1,987,070 		JBrowse link
G Dhx9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Dlx1 distal-less homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:2,248,181...2,250,991
Ensembl chrNW_004936509:2,248,181...2,250,991 		JBrowse link
G Dlx2 distal-less homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:2,262,873...2,265,391
Ensembl chrNW_004936509:2,262,873...2,265,391 		JBrowse link
G Dlx3 distal-less homeobox 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:11,625,862...11,630,035
Ensembl chrNW_004936490:11,625,862...11,631,131 		JBrowse link
G Dlx4 distal-less homeobox 4 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:11,645,787...11,650,273
Ensembl chrNW_004936490:11,645,787...11,650,273 		JBrowse link
G Dlx5 distal-less homeobox 5 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:3,462,063...3,466,641
Ensembl chrNW_004936585:3,461,944...3,466,641 		JBrowse link
G Dlx6 distal-less homeobox 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936585:3,477,081...3,481,087
Ensembl chrNW_004936585:3,476,692...3,481,087 		JBrowse link
G Dmrt1 doublesex and mab-3 related transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:3,944,941...4,049,132
Ensembl chrNW_004936503:3,944,933...4,049,132 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:3,857,165...3,864,130
Ensembl chrNW_004936503:3,857,165...3,864,147 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:3,922,417...3,936,493
Ensembl chrNW_004936503:3,922,417...3,936,493 		JBrowse link
G Dmrta1 DMRT like family A1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936652:3,909,238...3,915,415
Ensembl chrNW_004936652:3,908,542...3,915,388 		JBrowse link
G Dmrta2 DMRT like family A2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:10,175,742...10,181,596
Ensembl chrNW_004936522:10,175,686...10,182,301 		JBrowse link
G Dmrtb1 DMRT like family B with proline rich C-terminal 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:7,604,269...7,611,699
Ensembl chrNW_004936522:7,604,269...7,611,693 		JBrowse link
G Dmrtc2 DMRT like family C2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936706:582,541...586,735
Ensembl chrNW_004936706:582,541...586,715 		JBrowse link
G Dmtf1 cyclin D binding myb like transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936763:1,595,291...1,639,928
Ensembl chrNW_004936763:1,593,428...1,639,881 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:6,963,406...7,013,256
Ensembl chrNW_004936493:6,935,386...7,007,610 		JBrowse link
G E2f1 E2F transcription factor 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026 		JBrowse link
G E2f2 E2F transcription factor 2 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936474:8,719,243...8,739,811
Ensembl chrNW_004936474:8,719,253...8,737,763 		JBrowse link
G E2f3 E2F transcription factor 3 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936552:5,712,247...5,783,643
Ensembl chrNW_004936552:5,711,923...5,783,694 		JBrowse link
G E2f4 E2F transcription factor 4 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:17,663,887...17,670,312
Ensembl chrNW_004936475:17,663,914...17,670,302 		JBrowse link
G E2f5 E2F transcription factor 5 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936544:124,243...153,325
Ensembl chrNW_004936544:125,360...152,670 		JBrowse link
G E2f6 E2F transcription factor 6 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936532:7,356,525...7,375,173
Ensembl chrNW_004936532:7,356,510...7,375,536 		JBrowse link
G E2f7 E2F transcription factor 7 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936568:5,206,135...5,245,324
Ensembl chrNW_004936568:5,206,135...5,244,450 		JBrowse link
G E2f8 E2F transcription factor 8 enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936654:322,863...339,365
Ensembl chrNW_004936654:322,863...338,699 		JBrowse link
G Ebf1 EBF transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936515:4,266,419...4,643,702 JBrowse link
G Ebf2 EBF transcription factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936757:779,529...954,409
Ensembl chrNW_004936757:780,041...954,021 		JBrowse link
G Ebf3 EBF transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936486:16,978,048...17,092,209
Ensembl chrNW_004936486:16,976,442...17,092,228 		JBrowse link
G Ebf4 EBF family member 4 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:15,951,546...16,013,541
Ensembl chrNW_004936485:15,951,544...16,013,515 		JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta enables ISO (PMID:21597468) UniProt PMID:21597468 NCBI chrNW_004936470:8,538,899...8,553,645
Ensembl chrNW_004936470:8,538,821...8,553,970 		JBrowse link
G Egr1 early growth response 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:7,625,956...7,629,041
Ensembl chrNW_004936531:7,625,892...7,629,749 		JBrowse link
G Egr2 early growth response 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936753:1,958,250...1,962,640
Ensembl chrNW_004936753:1,958,264...1,962,640 		JBrowse link
G Egr3 early growth response 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936555:6,347,446...6,393,784
Ensembl chrNW_004936555:6,356,691...6,393,825
Ensembl chrNW_004936555:6,356,691...6,393,825 		JBrowse link
G Egr4 early growth response 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936491:17,068,797...17,071,608
Ensembl chrNW_004936491:17,069,325...17,071,226 		JBrowse link
G Ehf ETS homologous factor enables ISO (PMID:17027647) NTNU_SB PMID:17027647 NCBI chrNW_004936533:3,425,377...3,464,795 JBrowse link
G Elf1 E74 like ETS transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936667:449,682...553,780
Ensembl chrNW_004936667:500,195...553,808 		JBrowse link
G Elf3 E74 like ETS transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:2,494,645...2,500,361
Ensembl chrNW_004936567:2,494,505...2,499,601 		JBrowse link
G Elf4 E74 like ETS transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:1,519,663...1,534,510
Ensembl chrNW_004936479:1,519,874...1,530,733 		JBrowse link
G Elk1 ETS transcription factor ELK1 enables ISO
IEA		 RGD
Ensembl		 PMID:11557580 GO_REF:0000107 RGD:628487 NCBI chrNW_004936502:13,402,726...13,418,214
Ensembl chrNW_004936502:13,402,728...13,418,214 		JBrowse link
G Elk3 ETS transcription factor ELK3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936507:12,244,163...12,307,621
Ensembl chrNW_004936507:12,244,163...12,307,623 		JBrowse link
G Elk4 ETS transcription factor ELK4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:6,805,305...6,814,702
Ensembl chrNW_004936557:6,757,223...6,815,712 		JBrowse link
G Emx1 empty spiracles homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936491:16,745,310...16,762,422
Ensembl chrNW_004936491:16,745,310...16,762,422 		JBrowse link
G Emx2 empty spiracles homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:7,313,689...7,319,971
Ensembl chrNW_004936486:7,313,190...7,319,995 		JBrowse link
G En1 engrailed homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:51,439,944...51,451,194 JBrowse link
G En2 engrailed homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:9,787,174...9,791,422
Ensembl chrNW_004936527:9,787,174...9,791,422 		JBrowse link
G Eomes eomesodermin enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936473:18,825,969...18,833,179
Ensembl chrNW_004936473:18,825,942...18,833,179 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:20702579 RGD:5128544 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138 		JBrowse link
G Epas1 endothelial PAS domain protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:5,855,748...5,938,879
Ensembl chrNW_004936508:5,855,732...5,938,856 		JBrowse link
G Erg ETS transcription factor ERG enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:4,459,298...4,623,290
Ensembl chrNW_004936500:4,459,275...4,624,432 		JBrowse link
G Esr1 estrogen receptor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:4,616,839...4,887,179
Ensembl chrNW_004936489:4,614,754...4,887,171 		JBrowse link
G Esr2 estrogen receptor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:7,956,168...8,018,356
Ensembl chrNW_004936495:7,956,766...8,004,357 		JBrowse link
G Esrra estrogen related receptor alpha enables ISO (PMID:18234909) MGI PMID:18234909 NCBI chrNW_004936599:4,898,534...4,922,758
Ensembl chrNW_004936599:4,897,066...4,904,886 		JBrowse link
G Esrrb estrogen related receptor beta enables ISO (MGI:5823092|PMID:27723719)
(PMID:27723719)
(PMID:18662995)
(MGI:3813404|PMID:18662995)		 UniProt
BHF-UCL		 PMID:18662995 PMID:27723719 MGI:3813404 MGI:5823092 NCBI chrNW_004936488:5,350,133...5,452,366
Ensembl chrNW_004936488:5,292,466...5,454,689 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:3,728,971...3,795,612
Ensembl chrNW_004936572:3,730,327...3,795,625 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:4,244,706...4,257,223
Ensembl chrNW_004936500:4,244,604...4,257,265 		JBrowse link
G Etv1 ETS variant transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:742,586...832,972
Ensembl chrNW_004936546:740,485...833,082 		JBrowse link
G Etv2 ETS variant transcription factor 2 enables ISO (MGI:5572895|PMID:12087183) NTNU_SB PMID:12087183 MGI:5572895 NCBI chrNW_004936570:671,152...673,768 JBrowse link
G Etv4 ETS variant transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:120,533...138,463
Ensembl chrNW_004936541:123,049...139,256 		JBrowse link
G Etv6 ETS variant transcription factor 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936587:5,328,467...5,457,260
Ensembl chrNW_004936587:5,330,665...5,457,264 		JBrowse link
G Evx1 even-skipped homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:3,873,007...3,876,784
Ensembl chrNW_004936478:3,873,109...3,876,784 		JBrowse link
G Evx2 even-skipped homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:5,566,432...5,571,005
Ensembl chrNW_004936509:5,566,432...5,571,005 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152
Ensembl chrNW_004936527:5,024,068...5,063,939 		JBrowse link
G Fev FEV transcription factor, ETS family member enables ISO PMID:9468386 NTNU_SB PMID:9468386 RGD:633697 NCBI chrNW_004936569:1,402,513...1,408,699
Ensembl chrNW_004936569:1,402,513...1,406,067 		JBrowse link
G Fezf1 FEZ family zinc finger 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:3,027,138...3,030,442
Ensembl chrNW_004936605:3,027,122...3,030,449 		JBrowse link
G Fezf2 FEZ family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936637:4,045,224...4,051,058
Ensembl chrNW_004936637:4,047,119...4,052,741 		JBrowse link
G Figla folliculogenesis specific bHLH transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:14,979,097...14,993,315
Ensembl chrNW_004936491:14,988,269...14,993,315 		JBrowse link
G Fktn fukutin enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:6,612,318...6,680,690
Ensembl chrNW_004936559:6,619,531...6,670,727
Ensembl chrNW_004936559:6,619,531...6,670,727 		JBrowse link
G Fli1 Fli-1 proto-oncogene, ETS transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:3,448,870...3,576,406
Ensembl chrNW_004936572:3,448,862...3,577,836 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:4,384,710...4,388,118
Ensembl chrNW_004936488:4,384,705...4,388,122 		JBrowse link
G Fosb FosB proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:1,900,954...1,907,567
Ensembl chrNW_004936706:1,900,931...1,906,772 		JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:3,642,504...3,649,294
Ensembl chrNW_004936599:3,642,504...3,648,417 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936493:4,308,683...4,327,102
Ensembl chrNW_004936493:4,304,395...4,327,179 		JBrowse link
G Foxa1 forkhead box A1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936494:11,529,546...11,535,224
Ensembl chrNW_004936494:11,529,546...11,535,224 		JBrowse link
G Foxa2 forkhead box A2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936620:2,966,341...2,969,349
Ensembl chrNW_004936620:2,966,341...2,969,349 		JBrowse link
G Foxa3 forkhead box A3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936706:2,196,530...2,202,924
Ensembl chrNW_004936706:2,196,468...2,203,113 		JBrowse link
G Foxb1 forkhead box B1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:20,934,524...20,935,584
Ensembl chrNW_004936471:20,934,580...20,935,557 		JBrowse link
G Foxc2 forkhead box C2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Foxd2 forkhead box D2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:28,233,054...28,235,655
Ensembl chrNW_004936474:28,233,108...28,234,640 		JBrowse link
G Foxd3 forkhead box D3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936692:951,394...953,612
Ensembl chrNW_004936692:951,562...953,001 		JBrowse link
G Foxd4 forkhead box D4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:4,658,802...4,660,203 JBrowse link
G Foxe3 forkhead box E3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:28,211,144...28,212,963
Ensembl chrNW_004936474:28,211,313...28,212,272 		JBrowse link
G Foxf1 forkhead box F1 enables ISO (PMID:15987774) MGI PMID:15987774 NCBI chrNW_004943883:4...1,756 JBrowse link
G Foxf2 forkhead box F2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936633:2,538,209...2,543,649
Ensembl chrNW_004936633:2,536,970...2,543,765 		JBrowse link
G Foxi1 forkhead box I1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936609:4,667,425...4,694,259
Ensembl chrNW_004936609:4,667,425...4,669,746 		JBrowse link
G Foxi2 forkhead box I2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:15,320,044...15,321,691
Ensembl chrNW_004936486:15,320,044...15,321,691 		JBrowse link
G Foxi3 forkhead box I3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936712:517,566...522,709
Ensembl chrNW_004936712:517,562...522,925 		JBrowse link
G Foxj1 forkhead box J1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:1,284,799...1,288,898
Ensembl chrNW_004936594:1,284,781...1,289,361 		JBrowse link
G Foxj2 forkhead box J2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936892:324,103...344,739
Ensembl chrNW_004936892:331,239...344,624 		JBrowse link
G Foxj3 forkhead box J3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:23,654,925...23,764,965
Ensembl chrNW_004936474:23,652,398...23,764,969 		JBrowse link
G Foxk1 forkhead box K1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936765:1,126,168...1,255,354
Ensembl chrNW_004936765:1,133,287...1,148,907 		JBrowse link
G Foxk2 forkhead box K2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936923:109,973...166,952
Ensembl chrNW_004936923:111,248...170,535 		JBrowse link
G Foxl1 forkhead box L1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936641:2,226,489...2,227,613
Ensembl chrNW_004936641:2,226,550...2,227,578 		JBrowse link
G Foxl2 forkhead box L2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936540:1,136,403...1,137,984
Ensembl chrNW_004936540:1,136,468...1,137,574 		JBrowse link
G Foxo1 forkhead box O1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936565:5,210,014...5,299,213
Ensembl chrNW_004936565:5,210,014...5,302,436 		JBrowse link
G Foxo3 forkhead box O3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936564:4,788,036...4,907,600
Ensembl chrNW_004936564:4,787,992...4,903,837 		JBrowse link
G Foxo4 forkhead box O4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936762:495,271...501,278
Ensembl chrNW_004936762:493,910...501,531 		JBrowse link
G Foxo6 forkhead box O6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:22,943,231...22,964,208
Ensembl chrNW_004936474:22,943,385...22,963,288 		JBrowse link
G Foxp1 forkhead box P1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936603:2,631,781...3,146,104
Ensembl chrNW_004936603:2,632,274...2,830,324 		JBrowse link
G Foxp2 forkhead box P2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936589:4,120,162...4,661,258
Ensembl chrNW_004936589:4,123,182...4,382,005 		JBrowse link
G Foxp3 forkhead box P3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308 		JBrowse link
G Foxp4 forkhead box P4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:18,314,108...18,346,149
Ensembl chrNW_004936476:18,313,951...18,346,199 		JBrowse link
G Foxq1 forkhead box Q1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936633:2,458,473...2,460,990
Ensembl chrNW_004936633:2,459,047...2,460,260 		JBrowse link
G Foxs1 forkhead box S1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:18,803,675...18,804,933
Ensembl chrNW_004936485:18,803,641...18,805,003 		JBrowse link
G Fubp1 far upstream element binding protein 1 enables ISO (PMID:18836447) MGI PMID:18836447 NCBI chrNW_004936571:4,729,135...4,760,943
Ensembl chrNW_004936571:4,732,581...4,760,942 		JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936640:1,882,297...1,917,210
Ensembl chrNW_004936640:1,882,238...1,914,232 		JBrowse link
G Gata1 GATA binding protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936721:742,862...750,843
Ensembl chrNW_004936721:742,862...750,768 		JBrowse link
G Gata2 GATA binding protein 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936798:406,258...414,785
Ensembl chrNW_004936798:406,258...414,931 		JBrowse link
G Gata3 GATA binding protein 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966 		JBrowse link
G Gata4 GATA binding protein 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Gata5 GATA binding protein 5 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:10,061,675...10,070,541
Ensembl chrNW_004936514:10,061,675...10,070,541 		JBrowse link
G Gata6 GATA binding protein 6 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936550:1,814,336...1,844,399
Ensembl chrNW_004936550:1,814,336...1,844,399 		JBrowse link
G Gcm1 glial cells missing transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:7,724,666...7,738,401 JBrowse link
G Gcm2 glial cells missing transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936534:2,135,627...2,142,621
Ensembl chrNW_004936534:2,135,627...2,142,621 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936537:6,610,565...6,618,509
Ensembl chrNW_004936537:6,610,565...6,618,450 		JBrowse link
G Gli1 GLI family zinc finger 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936646:1,622,308...1,629,787
Ensembl chrNW_004936646:1,622,308...1,629,779 		JBrowse link
G Gli2 GLI family zinc finger 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:49,616,552...49,788,760
Ensembl chrNW_004936469:49,617,095...49,673,213 		JBrowse link
G Gli3 GLI family zinc finger 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011 		JBrowse link
G Gli4 GLI family zinc finger 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:8,767,797...8,772,590
Ensembl chrNW_004936470:8,767,408...8,772,529 		JBrowse link
G Glis1 GLIS family zinc finger 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:7,376,850...7,571,818
Ensembl chrNW_004936522:7,375,994...7,571,828 		JBrowse link
G Glis2 GLIS family zinc finger 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936694:161,419...168,012
Ensembl chrNW_004936694:163,501...167,659 		JBrowse link
G Glis3 GLIS family zinc finger 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:989,817...1,283,781
Ensembl chrNW_004936503:853,436...1,287,160 		JBrowse link
G Gmeb1 glucocorticoid modulatory element binding protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,747,987...12,781,077
Ensembl chrNW_004936474:12,747,935...12,781,074 		JBrowse link
G Gmeb2 glucocorticoid modulatory element binding protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936514:10,876,039...10,904,022
Ensembl chrNW_004936514:10,876,029...10,904,055 		JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936532:6,199,525...6,247,282
Ensembl chrNW_004936532:6,199,453...6,247,295 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:41,856,683...41,961,666
Ensembl chrNW_004936470:41,859,035...42,002,844 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:9,321,754...9,354,486
Ensembl chrNW_004936474:9,332,444...9,353,893 		JBrowse link
G Gsc goosecoid homeobox enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936846:286,429...288,405
Ensembl chrNW_004936846:286,420...288,405 		JBrowse link
G Gsc2 goosecoid homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:3,154,834...3,158,654
Ensembl chrNW_004936619:3,157,228...3,174,086 		JBrowse link
G Gsx1 GS homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:22,997,650...22,998,928
Ensembl chrNW_004936472:22,997,650...22,998,928 		JBrowse link
G Gtf2ird1 GTF2I repeat domain containing 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:3,435,039...3,483,202
Ensembl chrNW_004936543:3,435,072...3,483,246 		JBrowse link
G Gzf1 GDNF inducible zinc finger protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936620:2,208,185...2,223,651
Ensembl chrNW_004936620:2,208,224...2,218,539 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:8,289,764...8,292,937
Ensembl chrNW_004936515:8,289,315...8,293,175 		JBrowse link
G Hbp1 HMG-box transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936479:16,855,368...16,886,210
Ensembl chrNW_004936479:16,854,852...16,886,477 		JBrowse link
G Hcfc1 host cell factor C1 enables ISO (PMID:18836447) MGI PMID:18836447 NCBI chrNW_004936809:827,008...853,689
Ensembl chrNW_004936809:827,031...853,644 		JBrowse link
G Hdac1 histone deacetylase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:15,320,635...15,351,418
Ensembl chrNW_004936474:15,320,729...15,350,860 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO (MGI:5817507|PMID:28053041), (PMID:24137001) MGI PMID:24137001 PMID:28053041 MGI:5817507 NCBI chrNW_004936679:2,448,676...2,474,641
Ensembl chrNW_004936679:2,448,390...2,474,641 		JBrowse link
G Hdac4 histone deacetylase 4 enables ISO (PMID:24413532) UniProt PMID:24413532 NCBI chrNW_004936745:1,730,743...1,942,071
Ensembl chrNW_004936745:1,730,694...1,942,074 		JBrowse link
G Hdac5 histone deacetylase 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:561,721...598,915
Ensembl chrNW_004936541:558,414...599,195 		JBrowse link
G Hdac6 histone deacetylase 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Hdgf heparin binding growth factor enables ISO PMID:19162039 NTNU_SB PMID:19162039 RGD:8554761 NCBI chrNW_004936580:5,899,277...5,909,309
Ensembl chrNW_004936580:5,900,528...5,908,938 		JBrowse link
G Hdx highly divergent homeobox enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936547:5,051,555...5,158,383
Ensembl chrNW_004936547:5,049,844...5,158,360 		JBrowse link
G Helt helt bHLH transcription factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936554:4,245,684...4,247,832
Ensembl chrNW_004936554:4,245,648...4,247,700 		JBrowse link
G Hes2 hes family bHLH transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936623:1,213,281...1,215,879
Ensembl chrNW_004936623:1,209,885...1,216,424 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936623:1,096,519...1,098,175
Ensembl chrNW_004936623:1,096,870...1,097,858 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936737:1,045,496...1,047,865
Ensembl chrNW_004936737:1,046,613...1,047,950 		JBrowse link
G Hes6 hes family bHLH transcription factor 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:267,791...269,511
Ensembl chrNW_004936525:267,753...269,527 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:1,352,621...1,355,177
Ensembl chrNW_004936595:1,352,621...1,356,113 		JBrowse link
G Hesx1 HESX homeobox 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:7,545,982...7,572,222
Ensembl chrNW_004936473:7,545,839...7,548,013 		JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936871:666,961...670,910
Ensembl chrNW_004936871:666,938...670,916 		JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936639:3,705,225...3,714,696
Ensembl chrNW_004936639:3,703,447...3,716,820 		JBrowse link
G Heyl hes related family bHLH transcription factor with YRPW motif like enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:21,503,763...21,513,392
Ensembl chrNW_004936474:21,505,149...21,510,624 		JBrowse link
G Hhex hematopoietically expressed homeobox enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936601:2,137,490...2,143,797
Ensembl chrNW_004936601:2,136,873...2,143,857 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G Hif3a hypoxia inducible factor 3 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:296,288...323,143
Ensembl chrNW_004936664:294,975...323,149 		JBrowse link
G Hinfp histone H4 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,072,771...4,083,973
Ensembl chrNW_004936542:4,072,624...4,084,064 		JBrowse link
G Hivep1 HIVEP zinc finger 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936534:1,002,801...1,133,522
Ensembl chrNW_004936534:1,002,719...1,133,544 		JBrowse link
G Hivep2 HIVEP zinc finger 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936625:3,219,260...3,301,361
Ensembl chrNW_004936625:3,267,947...3,301,369 		JBrowse link
G Hivep3 HIVEP zinc finger 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:23,089,285...23,238,297
Ensembl chrNW_004936474:23,085,813...23,238,305 		JBrowse link
G Hlf HLF transcription factor, PAR bZIP family member enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:7,273,051...7,324,681
Ensembl chrNW_004936490:7,273,112...7,324,687 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:24,795,854...24,803,138
Ensembl chrNW_004936476:24,795,877...24,801,567 		JBrowse link
G Hnf1a HNF1 homeobox A enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505 		JBrowse link
G Hnf1b HNF1 homeobox B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936530:2,401,053...2,425,989
Ensembl chrNW_004936530:2,401,043...2,454,466 		JBrowse link
G Hnf4g hepatocyte nuclear factor 4 gamma enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936648:3,943,632...3,968,550
Ensembl chrNW_004936648:3,943,626...3,968,622 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Hoxa1 homeobox A1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:3,721,662...3,724,471
Ensembl chrNW_004936478:3,721,662...3,724,433 		JBrowse link
G Hoxa10 homeobox A10 enables ISO (PMID:21471217) NTNU_SB PMID:21471217 NCBI chrNW_004936478:3,798,679...3,802,007 JBrowse link
G Hoxa11 homeobox A11 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:3,809,288...3,813,014
Ensembl chrNW_004936478:3,809,288...3,813,014 		JBrowse link
G Hoxa13 homeobox A13 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:3,824,715...3,827,277
Ensembl chrNW_004936478:3,824,715...3,827,277 		JBrowse link
G Hoxa2 homeobox A2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:3,729,079...3,731,353
Ensembl chrNW_004936478:3,729,107...3,730,870 		JBrowse link
G Hoxa3 homeobox A3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:3,735,509...3,767,899
Ensembl chrNW_004936478:3,735,505...3,767,899 		JBrowse link
G Hoxa4 homeobox A4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:3,756,289...3,758,020 JBrowse link
G Hoxa5 homeobox A5 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:3,768,757...3,771,850
Ensembl chrNW_004936478:3,769,258...3,771,840 		JBrowse link
G Hoxa6 homeobox A6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:3,773,131...3,775,461
Ensembl chrNW_004936478:3,772,773...3,775,707 		JBrowse link
G Hoxa7 homeobox A7 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:3,782,476...3,784,361
Ensembl chrNW_004936478:3,782,482...3,784,361 		JBrowse link
G Hoxa9 homeobox A9 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:3,789,961...3,793,116
Ensembl chrNW_004936478:3,789,961...3,793,845 		JBrowse link
G Hoxb1 homeobox B1 enables
contributes_to		 IEA
ISO		 (PMID:9242495) Ensembl
TreeGrafter
MGI		 PMID:9242495 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:12,853,983...12,855,428
Ensembl chrNW_004936490:12,853,983...12,855,428 		JBrowse link
G Hoxb13 homeobox B13 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:12,688,572...12,690,908
Ensembl chrNW_004936490:12,688,559...12,690,908 		JBrowse link
G Hoxb2 homeobox B2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:12,841,286...12,843,782
Ensembl chrNW_004936490:12,841,695...12,843,494 		JBrowse link
G Hoxb3 homeobox B3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:12,834,240...12,836,812
Ensembl chrNW_004936490:12,834,240...12,836,398 		JBrowse link
G Hoxb4 homeobox B4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:12,808,679...12,811,688
Ensembl chrNW_004936490:12,808,679...12,811,688 		JBrowse link
G Hoxb5 homeobox B5 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:12,793,485...12,796,219
Ensembl chrNW_004936490:12,793,485...12,796,219 		JBrowse link
G Hoxb6 homeobox B6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:12,782,864...12,791,743
Ensembl chrNW_004936490:12,789,173...12,791,759 		JBrowse link
G Hoxb7 homeobox B7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,777,005...12,780,515
Ensembl chrNW_004936490:12,777,020...12,780,522 		JBrowse link
G Hoxb9 homeobox B9 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:12,761,668...12,765,658
Ensembl chrNW_004936490:12,761,522...12,766,657 		JBrowse link
G Hoxc10 homeobox C10 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:11,207,173...11,212,365
Ensembl chrNW_004936512:11,207,173...11,212,365 		JBrowse link
G Hoxc11 homeobox C11 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:11,194,876...11,197,316
Ensembl chrNW_004936512:11,194,876...11,197,316 		JBrowse link
G Hoxc4 homeobox C4 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:11,238,905...11,277,531
Ensembl chrNW_004936512:11,274,416...11,277,531 		JBrowse link
G Hoxc5 homeobox C5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:11,254,959...11,258,702
Ensembl chrNW_004936512:11,254,942...11,258,702 		JBrowse link
G Hoxc6 homeobox C6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:11,238,905...11,252,750
Ensembl chrNW_004936512:11,250,326...11,252,750 		JBrowse link
G Hoxc9 homeobox C9 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936512:11,222,120...11,225,455
Ensembl chrNW_004936512:11,217,547...11,225,455 		JBrowse link
G Hoxd1 homeobox D1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:5,673,184...5,674,636
Ensembl chrNW_004936509:5,673,184...5,674,521 		JBrowse link
G Hoxd10 homeobox D10 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:5,603,661...5,606,850
Ensembl chrNW_004936509:5,603,642...5,606,850 		JBrowse link
G Hoxd13 homeobox D13 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936509:5,579,846...5,581,651
Ensembl chrNW_004936509:5,579,843...5,581,651 		JBrowse link
G Hoxd3 homeobox D3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:5,654,737...5,659,937
Ensembl chrNW_004936509:5,651,190...5,659,937 		JBrowse link
G Hoxd4 homeobox D4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:5,637,600...5,640,335
Ensembl chrNW_004936509:5,637,600...5,640,917 		JBrowse link
G Hoxd9 homeobox D9 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:5,609,744...5,611,943
Ensembl chrNW_004936509:5,609,744...5,611,943 		JBrowse link
G Hsf1 heat shock transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:7,927,734...7,950,805
Ensembl chrNW_004936470:7,928,095...7,933,337 		JBrowse link
G Hsf2 heat shock transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936802:1,369,232...1,396,722
Ensembl chrNW_004936802:1,369,956...1,394,033 		JBrowse link
G Hsf4 heat shock transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,638,785...17,643,786
Ensembl chrNW_004936475:17,638,971...17,643,786 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936686:1,459,582...1,556,478
Ensembl chrNW_004936686:1,462,145...1,556,451 		JBrowse link
G Ikzf2 IKAROS family zinc finger 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936586:3,522,614...3,676,070
Ensembl chrNW_004936586:3,525,933...3,674,061 		JBrowse link
G Ikzf4 IKAROS family zinc finger 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:417,565...449,021
Ensembl chrNW_004936646:429,833...449,021 		JBrowse link
G Ikzf5 IKAROS family zinc finger 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:11,652,234...11,667,972
Ensembl chrNW_004936486:11,650,306...11,668,285 		JBrowse link
G Insm1 INSM transcriptional repressor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:66,889...69,792
Ensembl chrNW_004936485:68,004...69,596 		JBrowse link
G Insm2 INSM transcriptional repressor 2 enables