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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription cis-regulatory region binding
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Accession:GO:0000976 term browser browse the term
Definition:Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
Comment:Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.
Synonyms:exact_synonym: transcription regulatory region sequence-specific DNA binding
 narrow_synonym: bacterial-type RNA polymerase regulatory region DNA binding;   bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding;   eubacterial-type RNA polymerase regulatory region DNA binding;   eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding
 broad_synonym: regulatory region DNA binding
 related_synonym: transcription regulatory region DNA binding
 alt_id: GO:0000975;   GO:0000984;   GO:0001017;   GO:0044212

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transcription cis-regulatory region binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 enables ISO (MGI:5494393|PMID:22053081)
(PMID:22053081)		 BHF-UCL PMID:22053081 MGI:5494393 NCBI chr20:96,929,985...96,971,074
Ensembl chr20:96,934,659...96,971,014 		JBrowse link
G AHR aryl hydrocarbon receptor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:40,778,198...40,826,491
Ensembl chr21:40,778,218...40,826,478 		JBrowse link
G AHRR aryl-hydrocarbon receptor repressor enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:220,523...329,973
Ensembl chr 4:243,026...326,722 		JBrowse link
G AR androgen receptor enables ISO (PMID:12799378), (PMID:18487222), (PMID:19886863) BHF-UCL PMID:12799378 PMID:18487222 PMID:19886863 NCBI chr  X:57,380,587...57,553,613
Ensembl chr  X:57,380,611...57,546,776 		JBrowse link
G ARID4A AT-rich interaction domain 4A enables IEA TreeGrafter GO_REF:0000118 Ensembl chr24:35,491,317...35,558,049 JBrowse link
G ARID4B AT-rich interaction domain 4B enables IEA TreeGrafter GO_REF:0000118 NCBI chr25:72,338,190...72,501,999
Ensembl chr25:72,337,590...72,501,988 		JBrowse link
G ARID5A AT-rich interaction domain 5A enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:876,508...892,267
Ensembl chr14:876,562...892,166 		JBrowse link
G ARID5B AT-rich interaction domain 5B enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:69,190,100...69,382,448
Ensembl chr 9:69,190,045...69,382,069 		JBrowse link
G ASB8 ankyrin repeat and SOCS box containing 8 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:44,381,134...44,387,791
Ensembl chr11:44,381,466...44,388,071 		JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit enables ISO (PMID:16603732) UniProt PMID:16603732 NCBI chr 8:36,125,359...36,163,142 JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit enables IEA TreeGrafter GO_REF:0000118 Ensembl chr 8:36,126,429...36,153,481 JBrowse link
G ATF3 activating transcription factor 3 enables ISO (PMID:24939851) ParkinsonsUK-UCL PMID:24939851 NCBI chr25:16,910,312...16,922,598 JBrowse link
G ATF3 activating transcription factor 3 enables IEA Ensembl GO_REF:0000107 Ensembl chr25:16,911,537...16,922,213 JBrowse link
G ATF4 activating transcription factor 4 contributes_to
enables		 ISO
IEA		 (PMID:12871976) ParkinsonsUK-UCL
Ensembl		 PMID:12871976 GO_REF:0000107 NCBI chr19:22,092,046...22,094,184
Ensembl chr19:22,091,667...22,095,230 		JBrowse link
G ATF5 activating transcription factor 5 enables ISO (MGI:5688824|PMID:24216764)
(PMID:24216764)
PMID:19531563		 UniProt PMID:19531563 PMID:24216764 MGI:5688824 RGD:10400874 NCBI chr 6:43,085,634...43,090,234
Ensembl chr 6:43,084,665...43,091,751 		JBrowse link
G ATF6 activating transcription factor 6 enables ISO (PMID:16469704) ParkinsonsUK-UCL PMID:16469704 NCBI chr20:2,112,819...2,304,063
Ensembl chr20:2,117,982...2,304,027 		JBrowse link
G ATF6B activating transcription factor 6 beta enables ISO (PMID:11256944) ParkinsonsUK-UCL PMID:11256944 NCBI chr17:39,901,226...39,913,702
Ensembl chr17:39,901,226...39,914,142 		JBrowse link
G ATMIN ATM interactor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:66,492,443...66,503,813
Ensembl chr 5:66,492,599...66,503,908 		JBrowse link
G ATOH7 atonal bHLH transcription factor 7 enables ISO (PMID:31696227)
(PMID:33712461)
(MGI:6727566|PMID:33712461)		 UniProt PMID:31696227 PMID:33712461 MGI:6727566 NCBI chr 9:63,155,182...63,158,935
Ensembl chr 9:63,157,638...63,158,096 		JBrowse link
G BAHD1 bromo adjacent homology domain containing 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr26:42,543,308...42,572,880
Ensembl chr26:42,543,107...42,570,430 		JBrowse link
G BASP1 brain abundant membrane attached signal protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:16,871,488...16,937,685
Ensembl chr 4:16,936,178...16,936,858 		JBrowse link
G BCOR BCL6 corepressor enables ISO (PMID:19578371) UniProt PMID:19578371 NCBI chr  X:37,191,242...37,319,966
Ensembl chr  X:37,192,874...37,319,782 		JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 enables ISO (MGI:5014424|PMID:21680841)
(PMID:21680841)		 UniProt PMID:21680841 MGI:5014424 NCBI chr 1:51,430,670...51,540,344
Ensembl chr 1:51,431,180...51,462,674 		JBrowse link
G BRCA1 BRCA1 DNA repair associated enables ISO (PMID:20820192)
(MGI:5009779|PMID:20820192)		 BHF-UCL PMID:20820192 MGI:5009779 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRD4 bromodomain containing 4 enables ISO (PMID:23086925) UniProt PMID:23086925 NCBI chr 6:13,836,332...13,883,459
Ensembl chr 6:13,836,324...13,873,877 		JBrowse link
G BRD7 bromodomain containing 7 enables ISO (PMID:20228809) UniProt PMID:20228809 NCBI chr 5:36,114,951...36,168,786
Ensembl chr 5:36,112,289...36,168,728 		JBrowse link
G CALCOCO1 calcium binding and coiled-coil domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:49,816,546...49,833,655
Ensembl chr11:49,814,007...49,833,632 		JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 enables ISO (MGI:4887324|PMID:18188184)
(PMID:18188184)		 UniProt PMID:18188184 MGI:4887324 NCBI chr 6:9,866,715...9,915,655
Ensembl chr 6:9,866,534...9,914,682 		JBrowse link
G CBX3 chromobox 3 enables ISO (MGI:5569417|PMID:24413057)
(PMID:24413057)		 UniProt PMID:24413057 MGI:5569417 NCBI chr21:32,154,707...32,166,843
Ensembl chr21:32,155,839...32,166,114 		JBrowse link
G CBX4 chromobox 4 enables IEA Ensembl GO_REF:0000107 NCBI chr16:71,795,919...71,802,184
Ensembl chr16:71,795,862...71,802,051 		JBrowse link
G CCNT1 cyclin T1 enables ISO (MGI:4834059|PMID:20570862)
(PMID:20570862)		 BHF-UCL PMID:20570862 MGI:4834059 NCBI chr11:44,932,774...44,966,412
Ensembl chr11:44,937,350...44,966,018 		JBrowse link
G CDK5RAP2 CDK5 regulatory subunit associated protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:18,999,203...19,186,801
Ensembl chr12:18,999,213...19,186,785 		JBrowse link
G CDK9 cyclin dependent kinase 9 enables ISO (MGI:4834059|PMID:20570862)
(PMID:20570862)		 BHF-UCL PMID:20570862 MGI:4834059 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G CDX1 caudal type homeobox 1 enables ISO (PMID:24623306) UniProt PMID:24623306 NCBI chr23:52,763,731...52,795,005
Ensembl chr23:52,776,761...52,795,387 		JBrowse link
G CEBPA CCAAT enhancer binding protein alpha enables ISO (PMID:12695546), (PMID:28186500)
(PMID:18632661)		 UniProt
MGI		 PMID:12695546 PMID:18632661 PMID:28186500 NCBI chr 6:28,342,506...28,345,759
Ensembl chr 6:28,343,907...28,344,977 		JBrowse link
G CEBPB CCAAT enhancer binding protein beta enables IEA Ensembl GO_REF:0000107 NCBI chr 2:13,780,538...13,782,639
Ensembl chr 2:13,781,160...13,782,194 		JBrowse link
G CEBPD CCAAT enhancer binding protein delta enables ISO (PMID:18632661) MGI PMID:18632661 NCBI chr 8:43,873,075...43,874,375 JBrowse link
G CHD3 chromodomain helicase DNA binding protein 3 enables ISO (PMID:27068747) UniProt PMID:27068747 NCBI chr16:7,274,634...7,300,831
Ensembl chr16:7,276,850...7,300,832 		JBrowse link
G CIART circadian associated repressor of transcription enables IEA InterPro GO_REF:0000002
G CIITA class II major histocompatibility complex transactivator enables ISO (PMID:19041327) BHF-UCL PMID:19041327 NCBI chr 5:10,341,690...10,401,988
Ensembl chr 5:10,372,344...10,400,451 		JBrowse link
G CREB1 cAMP responsive element binding protein 1 ISO RGD PMID:16382163 PMID:21367864 RGD:10059371 RGD:7247438 NCBI chr10:93,316,774...93,395,187
Ensembl chr10:93,316,840...93,388,832 		JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 enables ISO (MGI:5616321|PMID:15665855)
(PMID:15665855)		 ParkinsonsUK-UCL PMID:15665855 MGI:5616321 RGD:1558627 NCBI chr 1:19,009,169...19,054,841
Ensembl chr 1:19,009,035...19,054,804 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 enables ISO (PMID:17178827)
(PMID:19767744)
(MGI:4438315|PMID:19767744)		 UniProt PMID:17178827 PMID:19767744 MGI:4438315 NCBI chr21:106,572,893...106,705,080
Ensembl chr21:106,578,422...106,705,089 		JBrowse link
G CREB3L3 cAMP responsive element binding protein 3 like 3 enables ISO (PMID:16469704) ParkinsonsUK-UCL PMID:16469704 NCBI chr 6:3,905,774...3,922,623 JBrowse link
G CREB3L3 cAMP responsive element binding protein 3 like 3 enables IEA Ensembl GO_REF:0000107 Ensembl chr 6:3,905,728...3,921,457 JBrowse link
G CRY2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:19,459,734...19,498,807
Ensembl chr 1:19,472,231...19,498,790 		JBrowse link
G CTCF CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chr 5:59,806,753...59,889,534
Ensembl chr 5:59,806,551...59,880,049 		JBrowse link
G CTCFL CCCTC-binding factor like enables ISO (PMID:18413740) UniProt PMID:18413740 NCBI chr 2:6,592,924...6,623,787 JBrowse link
G DDIT3 DNA damage inducible transcript 3 enables IEA Ensembl GO_REF:0000107 NCBI chr11:53,424,693...53,429,094
Ensembl chr11:53,424,868...53,425,576 		JBrowse link
G DHX36 DEAH-box helicase 36 enables ISO (MGI:5559667|PMID:21590736) UniProt PMID:21590736 MGI:5559667 NCBI chr15:36,387,242...36,438,133
Ensembl chr15:36,387,228...36,437,606 		JBrowse link
G DLX2 distal-less homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr10:57,604,989...57,609,487
Ensembl chr10:57,606,084...57,608,079 		JBrowse link
G DLX3 distal-less homeobox 3 enables IEA Ensembl GO_REF:0000107 NCBI chr16:43,339,733...43,345,599
Ensembl chr16:43,340,576...43,344,095 		JBrowse link
G DLX5 distal-less homeobox 5 enables ISO (PMID:19497851) UniProt PMID:19497851 Ensembl chr21:52,036,401...52,040,903 JBrowse link
G DUX4 double homeobox 4 enables ISO (PMID:17984056) UniProt PMID:17984056
G E2F1 E2F transcription factor 1 enables ISO (PMID:24014029) MGI PMID:24014029 NCBI chr 2:37,968,541...37,980,461
Ensembl chr 2:37,968,556...37,980,326 		JBrowse link
G EGR1 early growth response 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:41,139,636...41,143,598
Ensembl chr23:41,140,065...41,142,374 		JBrowse link
G EGR2 early growth response 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:68,472,640...68,479,612
Ensembl chr 9:68,475,102...68,479,595 		JBrowse link
G ELK1 ETS transcription factor ELK1 enables ISO (PMID:31146003) ARUK-UCL PMID:31146003
G ERBB4 erb-b2 receptor tyrosine kinase 4 enables ISO (PMID:15534001) UniProt PMID:15534001 NCBI chr10:97,099,090...98,281,697 JBrowse link
G ETS1 ETS proto-oncogene 1, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:119,588,476...119,736,623
Ensembl chr 1:119,588,448...119,652,299 		JBrowse link
G ETV5 ETS variant transcription factor 5 enables IEA Ensembl GO_REF:0000107 NCBI chr15:3,313,331...3,376,024
Ensembl chr15:3,316,585...3,373,708 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:22821416 RGD:7242953 NCBI chr21:117,380,518...117,515,224
Ensembl chr21:117,380,361...117,421,573 		JBrowse link
G FEZF1 FEZ family zinc finger 1 enables ISO (MGI:5908758|PMID:28245922)
(PMID:28245922)		 UniProt PMID:28245922 MGI:5908758 NCBI chr21:91,099,660...91,110,242
Ensembl chr21:91,100,346...91,102,767 		JBrowse link
G FEZF2 FEZ family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chr22:23,442,699...23,453,026
Ensembl chr22:23,443,114...23,445,908 		JBrowse link
G FLI1 Fli-1 proto-oncogene, ETS transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:119,817,987...119,945,378
Ensembl chr 1:119,827,222...119,946,662 		JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl GO_REF:0000107 NCBI chr24:52,497,465...52,501,161
Ensembl chr24:52,497,521...52,501,514 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit enables ISO
IEA		 RGD
Ensembl		 PMID:21367864 GO_REF:0000107 RGD:7247438 NCBI chr14:79,201,128...79,222,363
Ensembl chr14:79,201,649...79,222,373 		JBrowse link
G FOXA1 forkhead box A1 enables IEA Ensembl GO_REF:0000107 NCBI chr24:14,397,759...14,403,078
Ensembl chr24:14,396,702...14,403,094 		JBrowse link
G FOXA2 forkhead box A2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G FOXA3 forkhead box A3 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:39,309,439...39,320,102
Ensembl chr 6:39,310,108...39,320,095 		JBrowse link
G FOXC1 forkhead box C1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476 		JBrowse link
G FOXC2 forkhead box C2 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:71,951,980...71,955,021
Ensembl chr 5:71,952,632...71,954,134 		JBrowse link
G FOXD3 forkhead box D3 enables ISO (PMID:7958446) MGI PMID:7958446 NCBI chr20:69,743,872...69,746,551
Ensembl chr20:69,744,503...69,745,939 		JBrowse link
G FOXF1 forkhead box F1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
G FOXH1 forkhead box H1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:138,685,137...138,688,451
Ensembl chr 8:138,685,626...138,687,144 		JBrowse link
G FOXI1 forkhead box I1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:72,319,377...72,324,442
Ensembl chr23:72,321,483...72,325,532 		JBrowse link
G FOXJ1 forkhead box J1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:45,536,973...45,544,331
Ensembl chr16:45,539,510...45,544,299 		JBrowse link
G FOXK1 forkhead box K1 enables IEA Ensembl GO_REF:0000107 NCBI chr28:16,875,747...16,962,813
Ensembl chr28:16,880,884...16,962,734 		JBrowse link
G FOXK2 forkhead box K2 enables IEA Ensembl GO_REF:0000107 NCBI chr16:74,426,111...74,506,453
Ensembl chr16:74,426,105...74,503,373 		JBrowse link
G FOXM1 forkhead box M1 enables ISO (PMID:17261592) MGI PMID:17261592 NCBI chr11:2,920,903...2,941,011
Ensembl chr11:2,920,663...2,940,823 		JBrowse link
G FOXN1 forkhead box N1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:22,291,597...22,306,977
Ensembl chr16:22,292,330...22,305,968 		JBrowse link
G FOXN4 forkhead box N4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:104,499,654...104,536,338
Ensembl chr11:104,499,633...104,534,275 		JBrowse link
G FOXO3 forkhead box O3 enables ISO (MGI:4881905|PMID:19933931)
(PMID:19933931)		 BHF-UCL PMID:19933931 MGI:4881905 NCBI chr13:65,175,764...65,303,107
Ensembl chr13:65,195,376...65,301,725 		JBrowse link
G FOXP1 forkhead box P1 ISO RGD PMID:21606195 RGD:11561924 NCBI chr22:31,907,941...32,538,294
Ensembl chr22:31,912,460...32,154,502 		JBrowse link
G GABPA GA binding protein transcription factor subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 2:66,502,250...66,539,436
Ensembl chr 2:66,505,401...66,539,791 		JBrowse link
G GABPB1 GA binding protein transcription factor subunit beta 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:32,967,912...33,039,114
Ensembl chr26:33,008,209...33,039,689 		JBrowse link
G GABPB2 GA binding protein transcription factor subunit beta 2 enables ISO (PMID:9857059) MGI PMID:9857059 NCBI chr20:12,558,951...12,623,941 JBrowse link
G GABPB2 GA binding protein transcription factor subunit beta 2 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr20:12,570,343...12,606,677 JBrowse link
G GATA1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:45,912,638...45,920,415
Ensembl chr  X:45,917,231...45,920,268 		JBrowse link
G GATA3 GATA binding protein 3 enables ISO (PMID:19723756), (PMID:19735555), (PMID:19805038), (PMID:20189993), (PMID:20484083) UniProt PMID:19723756 PMID:19735555 PMID:19805038 PMID:20189993 PMID:20484083 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G GATA4 GATA binding protein 4 enables IEA UniProt GO_REF:0000117 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GATA5 GATA binding protein 5 enables IEA UniProt GO_REF:0000117 NCBI chr 2:1,756,911...1,769,452
Ensembl chr 2:1,757,420...1,768,143 		JBrowse link
G GATA6 GATA binding protein 6 enables IEA UniProt GO_REF:0000117 NCBI chr18:58,312,328...58,345,472
Ensembl chr18:58,311,482...58,343,746 		JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor enables IEA Ensembl GO_REF:0000107 NCBI chr20:40,771,238...40,786,008
Ensembl chr20:40,776,816...40,783,717 		JBrowse link
G GLI1 GLI family zinc finger 1 enables ISO (PMID:17035233) UniProt PMID:17035233 NCBI chr11:53,371,929...53,384,339
Ensembl chr11:53,375,558...53,385,269 		JBrowse link
G GLI2 GLI family zinc finger 2 enables ISO (PMID:19124651) MGI PMID:19124651 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLIS2 GLIS family zinc finger 2 enables ISO (MGI:4936785|PMID:21127075)
(PMID:21127075)		 BHF-UCL PMID:21127075 MGI:4936785 NCBI chr 5:3,996,333...4,019,499
Ensembl chr 5:3,996,372...4,019,542 		JBrowse link
G GMNN geminin DNA replication inhibitor NOT|enables ISO (MGI:3663964|PMID:16924111)
(PMID:16924111)		 UniProt PMID:16924111 MGI:3663964 NCBI chr17:47,462,647...47,474,445
Ensembl chr17:47,461,645...47,474,417 		JBrowse link
G GRHL1 grainyhead like transcription factor 1 enables ISO (MGI:3778256|PMID:18288204)
(PMID:18288204)		 UniProt PMID:18288204 MGI:3778256 NCBI chr14:97,632,494...97,686,257 JBrowse link
G H2AFY core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:38,113,212...38,178,227
Ensembl chr23:38,113,195...38,168,382 		JBrowse link
G H2AFY2 H2A histone family member Y2 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:61,194,887...61,254,361
Ensembl chr 9:61,195,431...61,231,228 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 contributes_to
enables		 ISO
IEA		 (PMID:11802795) BHF-UCL
Ensembl		 PMID:11802795 GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 contributes_to
enables		 ISO
IEA		 (MGI:4362015|PMID:11812799) BHF-UCL
Ensembl		 PMID:11812799 GO_REF:0000107 MGI:4362015 NCBI chr 7:119,635,697...119,639,415
Ensembl chr 7:119,634,741...119,638,546 		JBrowse link
G HDAC1 histone deacetylase 1 enables ISO (MGI:5569417|PMID:24413057) UniProt PMID:24413057 MGI:5569417 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G HDAC4 histone deacetylase 4 contributes_to ISO (PMID:18850004) BHF-UCL PMID:18850004 NCBI chr10:125,098,375...125,450,524
Ensembl chr10:125,098,366...125,403,227 		JBrowse link
G HDAC5 histone deacetylase 5 contributes_to
enables		 ISO
IEA		 (PMID:19351956) BHF-UCL
Ensembl		 PMID:19351956 GO_REF:0000107 NCBI chr16:62,267,837...62,314,914
Ensembl chr16:62,274,041...62,315,094 		JBrowse link
G HHEX hematopoietically expressed homeobox enables ISO (PMID:18755198) BHF-UCL PMID:18755198 NCBI chr 9:85,957,684...85,963,414
Ensembl chr 9:85,957,779...85,963,404 		JBrowse link
G HINFP histone H4 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:110,495,188...110,509,855
Ensembl chr 1:110,500,566...110,510,222 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:17426251) UniProt PMID:17426251 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HMGB1 high mobility group box 1 enables ISO (PMID:19158276) UniProt PMID:19158276 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HMGB2 high mobility group box 2 enables ISO (PMID:19965638) UniProt PMID:19965638 NCBI chr 7:119,440,089...119,442,806
Ensembl chr 7:119,440,468...119,443,578 		JBrowse link
G HNF1A HNF1 homeobox A enables ISO (PMID:12453420), (PMID:15961790) BHF-UCL PMID:12453420 PMID:15961790 NCBI chr11:116,334,935...116,358,582
Ensembl chr11:116,335,675...116,357,751 		JBrowse link
G HNF1B HNF1 homeobox B enables IEA Ensembl GO_REF:0000107 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 2:19,390,870...19,466,300
Ensembl chr 2:19,388,891...19,421,664 		JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L enables ISO (PMID:11809897) UniProt PMID:11809897 NCBI chr 6:33,452,705...33,469,070
Ensembl chr 6:33,452,852...33,466,284 		JBrowse link
G HOXA13 homeobox A13 enables IEA Ensembl GO_REF:0000107 NCBI chr21:31,168,239...31,175,960
Ensembl chr21:31,168,793...31,173,056 		JBrowse link
G HOXC13 homeobox C13 enables ISO (PMID:27506447) ARUK-UCL PMID:27506447 NCBI chr11:50,039,034...50,057,178
Ensembl chr11:50,049,509...50,055,895 		JBrowse link
G HSF1 heat shock transcription factor 1 enables ISO (PMID:24504023) ARUK-UCL PMID:24504023 NCBI chr 8:138,503,836...138,529,562
Ensembl chr 8:138,503,831...138,529,165 		JBrowse link
G IKZF1 IKAROS family zinc finger 1 enables ISO (MGI:3822269|PMID:18804520), (PMID:7969165) UniProt PMID:7969165 PMID:18804520 MGI:3822269 NCBI chr21:8,398,902...8,500,431
Ensembl chr21:8,402,719...8,484,723 		JBrowse link
G IRF1 interferon regulatory factor 1 enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr23:35,309,058...35,317,765
Ensembl chr23:35,307,772...35,316,763 		JBrowse link
G IRF2 interferon regulatory factor 2 enables IEA InterPro GO_REF:0000002 NCBI chr 7:130,352,809...130,440,485
Ensembl chr 7:130,350,262...130,440,600 		JBrowse link
G IRF3 interferon regulatory factor 3 enables IEA InterPro GO_REF:0000002 NCBI chr 6:42,835,285...42,841,487
Ensembl chr 6:42,831,203...42,840,796 		JBrowse link
G IRF4 interferon regulatory factor 4 enables IEA InterPro GO_REF:0000002 Ensembl chr17:71,751,770...71,757,496 JBrowse link
G IRF5 interferon regulatory factor 5 enables IEA InterPro GO_REF:0000002 NCBI chr21:97,536,803...97,549,576
Ensembl chr21:97,537,790...97,549,945 		JBrowse link
G IRF6 interferon regulatory factor 6 enables IEA InterPro GO_REF:0000002 Ensembl chr25:19,648,130...19,663,874 JBrowse link
G IRF7 interferon regulatory factor 7 enables IEA InterPro GO_REF:0000002 NCBI chr 1:430,412...433,959
Ensembl chr 1:429,310...432,925 		JBrowse link
G IRF8 interferon regulatory factor 8 enables IEA InterPro GO_REF:0000002 NCBI chr 5:71,301,878...71,325,622
Ensembl chr 5:71,302,233...71,325,613 		JBrowse link
G IRF9 interferon regulatory factor 9 enables IEA InterPro GO_REF:0000002 NCBI chr24:1,146,116...1,151,622
Ensembl chr24:1,146,618...1,151,546 		JBrowse link
G ISL1 ISL LIM homeobox 1 enables ISO (MGI:7339313|PMID:18539116)
(PMID:18539116)		 UniProt PMID:18539116 MGI:7339313 NCBI chr 4:47,665,861...47,678,631
Ensembl chr 4:47,666,536...47,677,552 		JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit enables ISO (PMID:14645924), (PMID:21113145), (PMID:22083952), (PMID:24623306), (PMID:2833704), (PMID:9732876)
(PMID:19303854)		 BHF-UCL
MGI		 PMID:2833704 PMID:9732876 PMID:14645924 PMID:19303854 PMID:21113145 More... NCBI chr20:74,204,481...74,207,835
Ensembl chr20:74,205,542...74,206,546 		JBrowse link
G JUND JunD proto-oncogene, AP-1 transcription factor subunit enables ISO PMID:10523647
(PMID:22990073)
(PMID:1903194)		 ParkinsonsUK-UCL
MGI
UniProt		 PMID:1903194 PMID:10523647 PMID:22990073 RGD:10047214 NCBI chr 6:16,754,553...16,756,458
Ensembl chr 6:16,755,247...16,756,290 		JBrowse link
G KCNH2 potassium voltage-gated channel subfamily H member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr21:119,123,601...119,156,985
Ensembl chr21:119,124,007...119,156,794 		JBrowse link
G KDM5A lysine demethylase 5A enables ISO (PMID:18270511) CAFA PMID:18270511 NCBI chr11:285,206...381,481
Ensembl chr11:286,728...381,430 		JBrowse link
G KLF1 KLF transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:11,563,773...11,566,615
Ensembl chr 6:11,564,235...11,566,495 		JBrowse link
G KLF11 KLF transcription factor 11 enables ISO (PMID:21171965) BHF-UCL PMID:21171965 NCBI chr14:97,574,930...97,586,398
Ensembl chr14:97,573,555...97,586,256 		JBrowse link
G KLF15 KLF transcription factor 15 enables ISO (MGI:5312158|PMID:22367544)
(PMID:22367544)		 UniProt PMID:22367544 MGI:5312158 NCBI chr22:54,659,406...54,674,321
Ensembl chr22:54,659,703...54,674,368 		JBrowse link
G KLF17 KLF transcription factor 17 enables ISO (MGI:4410400|PMID:19801974)
(PMID:19801974)		 UniProt PMID:19801974 MGI:4410400 NCBI chr20:88,651,224...88,666,423
Ensembl chr20:88,654,702...88,665,822 		JBrowse link
G KLF4 KLF transcription factor 4 enables ISO PMID:19531492
(PMID:16954384), (PMID:24161396)
(MGI:4887334|PMID:16954384), (PMID:24161396)		 UniProt
MGI		 PMID:16954384 PMID:19531492 PMID:24161396 MGI:4887334 RGD:8553301 NCBI chr12:32,045,690...32,050,531
Ensembl chr12:32,045,609...32,050,703 		JBrowse link
G KMT2D lysine methyltransferase 2D enables IEA Ensembl GO_REF:0000107 NCBI chr11:45,260,873...45,303,898
Ensembl chr11:45,263,408...45,302,423 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables ISO (PMID:12551949), (PMID:19056892), (PMID:7537238) MGI PMID:7537238 PMID:12551949 PMID:19056892 NCBI chr 7:55,974,770...56,096,214
Ensembl chr 7:55,990,621...56,094,110 		JBrowse link
G LHX3 LIM homeobox 3 enables ISO (MGI:7339313|PMID:18539116)
(PMID:18539116)		 UniProt PMID:18539116 MGI:7339313 NCBI chr12:1,997,437...2,007,473
Ensembl chr12:2,000,638...2,006,430 		JBrowse link
G LOC103216393 paired box protein Pax-2 enables ISO (PMID:16368682), (PMID:16735463), (PMID:19048125), (PMID:9178767)
(PMID:17047028)
(MGI:3697544|PMID:17047028)		 UniProt PMID:9178767 PMID:16368682 PMID:16735463 PMID:17047028 PMID:19048125 MGI:3697544 NCBI chr 9:93,763,975...93,847,180 JBrowse link
G LOC103226510 uncharacterized LOC103226510 enables ISO (MGI:3522068|PMID:15383550)
(PMID:15383550)		 UniProt PMID:15383550 MGI:3522068 NCBI chr21:52,032,933...52,092,791
Ensembl chr21:52,036,401...52,040,903 		JBrowse link
G LOC103230356 uncharacterized LOC103230356 enables IEA Ensembl GO_REF:0000107 NCBI chr25:29,230,358...29,380,617
Ensembl chr25:29,233,558...29,379,922 		JBrowse link
G LOC103231594 brain acid soluble protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:11,075,901...11,077,476
Ensembl chr 4:16,936,178...16,936,858 		JBrowse link
G LOC103235209 zinc finger protein 808 enables ISO (PMID:37973953) UniProt PMID:37973953 NCBI chr 6:45,264,119...45,286,626 JBrowse link
G LOC103238406 cyclic AMP-dependent transcription factor ATF-7 enables ISO (PMID:17264123) UniProt PMID:17264123 NCBI chr11:49,608,653...49,728,702
Ensembl chr11:49,618,136...49,728,289 		JBrowse link
G LOC103247719 double homeobox protein 1-like enables IEA Ensembl GO_REF:0000107
G MAFK MAF bZIP transcription factor K enables ISO (MGI:894855|PMID:9240432)
(PMID:9240432)		 UniProt PMID:9240432 MGI:894855 NCBI chr28:20,057,386...20,070,020
Ensembl chr28:20,060,001...20,061,170 		JBrowse link
G MEF2C myocyte enhancer factor 2C enables ISO (MGI:4940010|PMID:8035824)
(PMID:8035824)		 BHF-UCL PMID:8035824 MGI:4940010 NCBI chr 4:82,702,378...82,887,491
Ensembl chr 4:82,706,738...82,788,152 		JBrowse link
G MEN1 menin 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:9,423,885...9,431,123
Ensembl chr 1:9,423,917...9,431,104 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr29:8,286,551...8,288,777
Ensembl chr29:8,286,828...8,287,918 		JBrowse link
G MRTFA myocardin related transcription factor A enables ISO (PMID:17991879) MGI PMID:17991879 NCBI chr19:22,980,071...23,197,199
Ensembl chr19:22,981,216...23,034,179 		JBrowse link
G MSX1 msh homeobox 1 enables
contributes_to		 IEA
ISO		 (PMID:23371388)
(MGI:6874923|PMID:23371388)		 Ensembl
UniProt		 PMID:23371388 GO_REF:0000107 MGI:6874923 NCBI chr27:41,028,763...41,032,676
Ensembl chr27:41,028,919...41,033,006 		JBrowse link
G MSX2 msh homeobox 2 enables ISO (MGI:3522068|PMID:15383550) UniProt PMID:15383550 MGI:3522068 NCBI chr23:76,873,499...76,879,935
Ensembl chr23:76,873,669...76,879,553 		JBrowse link
G MTERF3 mitochondrial transcription termination factor 3 enables ISO (PMID:17662942) UniProt PMID:17662942 NCBI chr 8:91,203,095...91,223,524
Ensembl chr 8:91,203,169...91,223,512 		JBrowse link
G MZF1 myeloid zinc finger 1 enables ISO (PMID:15541732) UniProt PMID:15541732 NCBI chr 6:50,837,680...50,849,283 JBrowse link
G MZF1 myeloid zinc finger 1 enables IEA Ensembl GO_REF:0000107 Ensembl chr 6:50,837,837...50,846,241 JBrowse link
G NANOG Nanog homeobox enables ISO (PMID:25825768)
(PMID:20123909)		 UniProt
MGI		 PMID:20123909 PMID:25825768 NCBI chr11:7,813,309...7,820,009 JBrowse link
G NCOR1 nuclear receptor corepressor 1 enables ISO (MGI:3604169|PMID:16127449)
(PMID:16127449)		 BHF-UCL PMID:16127449 MGI:3604169 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NFATC2 nuclear factor of activated T cells 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:12,412,935...12,585,275
Ensembl chr 2:12,430,744...12,540,131 		JBrowse link
G NFATC3 nuclear factor of activated T cells 3 enables ISO PMID:19538478
(MGI:5285124|PMID:21514407), (MGI:6871969|PMID:24970700), (MGI:7565895|PMID:19538478)		 UniProt PMID:19538478 PMID:21514407 PMID:24970700 MGI:5285124 MGI:6871969 MGI:7565895 RGD:401901216 NCBI chr 5:59,193,139...59,346,361 JBrowse link
G NFATC4 nuclear factor of activated T cells 4 enables ISO (MGI:7565895|PMID:19538478) UniProt PMID:19538478 MGI:7565895 NCBI chr24:1,352,173...1,362,150
Ensembl chr24:1,352,291...1,362,680 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 enables ISO PMID:16314513
(PMID:9240432)
(PMID:17015834), (PMID:20452972)
(MGI:894855|PMID:9240432)		 UniProt PMID:9240432 PMID:16314513 PMID:17015834 PMID:20452972 MGI:894855 RGD:8655528 NCBI chr10:62,789,647...62,825,651
Ensembl chr10:62,790,124...62,825,339 		JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 enables ISO
IEA		 RGD
Ensembl		 PMID:14576180 GO_REF:0000107 RGD:1358515 NCBI chr 7:50,589,494...50,711,472
Ensembl chr 7:50,589,856...50,711,498 		JBrowse link
G NFYA nuclear transcription factor Y subunit alpha contributes_to ISO (PMID:11256944)
(PMID:15516209)		 ParkinsonsUK-UCL
MGI		 PMID:11256944 PMID:15516209 NCBI chr17:31,057,059...31,084,036
Ensembl chr17:31,059,630...31,077,926 		JBrowse link
G NFYB nuclear transcription factor Y subunit beta contributes_to
enables		 ISO
IEA		 (PMID:11256944)
(PMID:15516209)		 ParkinsonsUK-UCL
MGI
Ensembl		 PMID:11256944 PMID:15516209 GO_REF:0000107 NCBI chr11:99,320,263...99,341,289
Ensembl chr11:99,319,390...99,329,726 		JBrowse link
G NFYC nuclear transcription factor Y subunit gamma contributes_to
enables		 ISO
IEA		 (PMID:11256944)
(PMID:15516209)		 ParkinsonsUK-UCL
MGI
Ensembl		 PMID:11256944 PMID:15516209 GO_REF:0000107 NCBI chr20:92,152,410...92,232,501
Ensembl chr20:92,152,141...92,189,107 		JBrowse link
G NKX2-1 NK2 homeobox 1 enables ISO (PMID:19176457)
(PMID:18632661)
(PMID:14960358), (PMID:1735431), (PMID:7559607)		 UniProt
MGI		 PMID:1735431 PMID:7559607 PMID:14960358 PMID:18632661 PMID:19176457 NCBI chr24:13,274,118...13,317,533
Ensembl chr24:13,310,846...13,317,056 		JBrowse link
G NKX2-5 NK2 homeobox 5 enables IEA Ensembl GO_REF:0000107 NCBI chr23:75,391,833...75,399,003
Ensembl chr23:75,391,847...75,395,205 		JBrowse link
G NKX3-1 NK3 homeobox 1 enables ISO (PMID:19263243), (PMID:20855495) BHF-UCL PMID:19263243 PMID:20855495 NCBI chr 8:21,792,069...21,797,258
Ensembl chr 8:21,791,422...21,796,319 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 enables ISO (PMID:18511497) RGD
BHF-UCL		 PMID:8015547 PMID:18511497 RGD:10448983 NCBI chr16:66,078,990...66,086,927
Ensembl chr16:66,079,089...66,090,685 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 contributes_to
enables		 ISO
IEA		 (MGI:4399016|PMID:17107947)
(PMID:18511497)		 BHF-UCL
Ensembl		 PMID:17107947 PMID:18511497 GO_REF:0000107 MGI:4399016 NCBI chr 1:18,041,495...18,061,196
Ensembl chr 1:18,041,830...18,051,501 		JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 enables ISO (PMID:26888176) UniProt PMID:26888176 NCBI chr11:95,792,428...95,877,989
Ensembl chr11:95,792,996...95,878,293 		JBrowse link
G OVOL2 ovo like zinc finger 2 enables ISO (PMID:19700410) BHF-UCL PMID:19700410 NCBI chr 2:47,082,294...47,118,880
Ensembl chr 2:47,082,167...47,117,521 		JBrowse link
G PAX2 paired box 2 enables IEA Ensembl GO_REF:0000107 Ensembl chr 9:93,767,514...93,844,326 JBrowse link
G PAX6 paired box 6 enables ISO (MGI:6478056|PMID:23990468), (PMID:19521500)
(PMID:19521500), (PMID:23990468)		 UniProt PMID:19521500 PMID:23990468 MGI:6478056 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G PAX8 paired box 8 enables IEA Ensembl GO_REF:0000107 NCBI chr14:16,236,074...16,299,650
Ensembl chr14:16,233,378...16,297,365 		JBrowse link
G PBX1 PBX homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr25:63,990,553...64,317,901
Ensembl chr25:63,989,612...64,084,673 		JBrowse link
G PER1 period circadian regulator 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:7,520,122...7,536,176
Ensembl chr16:7,520,006...7,531,940 		JBrowse link
G PER2 period circadian regulator 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:124,270,917...124,316,031
Ensembl chr10:124,269,543...124,315,904 		JBrowse link
G PER3 period circadian regulator 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:123,912,773...123,970,440
Ensembl chr20:123,912,208...123,970,549 		JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 enables IEA Ensembl GO_REF:0000107 NCBI chr26:15,294,296...15,432,731
Ensembl chr26:15,297,934...15,432,659 		JBrowse link
G PITX2 paired like homeodomain 2 enables ISO (PMID:12612071), (PMID:9685346) BHF-UCL PMID:9685346 PMID:12612071 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
G POU2F1 POU class 2 homeobox 1 ISO RGD PMID:8632766 PMID:12818430 RGD:731231 RGD:9727455 NCBI chr25:61,599,803...61,800,615
Ensembl chr25:61,611,330...61,654,173 		JBrowse link
G POU2F2 POU class 2 homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:36,292,252...36,382,354
Ensembl chr 6:36,295,275...36,336,013 		JBrowse link
G POU5F1 POU class 5 homeobox 1 enables ISO (PMID:19409607), (PMID:19736317)
(PMID:17541407), (PMID:25901318)
(MGI:4399014|PMID:17541407), (PMID:25901318)		 BHF-UCL
MGI
UniProt		 PMID:17541407 PMID:19409607 PMID:19736317 PMID:25901318 MGI:4399014 NCBI chr17:41,306,523...41,313,065 JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables ISO (MGI:3604169|PMID:16127449), (MGI:4881351|PMID:21035761)
(PMID:16127449), (PMID:21035761)
PMID:19383491
(PMID:18293083)		 UniProt
BHF-UCL		 PMID:16127449 PMID:18293083 PMID:19383491 PMID:21035761 MGI:3604169 MGI:4881351 RGD:8553457 NCBI chr22:48,262,743...48,407,415
Ensembl chr22:48,275,600...48,407,418 		JBrowse link
G PRDM1 PR/SET domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:67,695,436...67,719,487
Ensembl chr13:67,695,309...67,718,931 		JBrowse link
G PRDM16 PR/SET domain 16 enables ISO (PMID:12816872) ARUK-UCL PMID:12816872 NCBI chr20:128,249,894...128,613,842 JBrowse link
G PRDM16 PR/SET domain 16 enables IEA Ensembl GO_REF:0000107 Ensembl chr20:128,272,709...128,612,183 JBrowse link
G PRDM5 PR/SET domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr 7:67,985,387...68,207,113
Ensembl chr 7:67,987,359...68,206,893 		JBrowse link
G PRDM9 PR/SET domain 9 enables ISO (PMID:29072575) UniProt PMID:29072575 NCBI chr 4:22,902,119...22,922,193 JBrowse link
G PROX1 prospero homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr25:15,533,546...15,592,834
Ensembl chr25:15,538,964...15,587,059 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein enables ISO (PMID:25901318) MGI PMID:25901318 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G RARA retinoic acid receptor alpha enables ISO (MGI:4411947|PMID:19752193)
(PMID:19752193)
(PMID:25209250)		 UniProt
MGI		 PMID:19752193 PMID:25209250 MGI:4411947 NCBI chr16:65,817,849...65,866,862
Ensembl chr16:65,817,757...65,866,878 		JBrowse link
G RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit enables IEA Ensembl GO_REF:0000107 NCBI chr25:24,217,090...24,253,532
Ensembl chr25:24,217,125...24,256,420 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables ISO (PMID:17350185) UniProt PMID:17350185 NCBI chr 1:8,576,059...8,585,561
Ensembl chr 1:8,576,542...8,586,516 		JBrowse link
G REST RE1 silencing transcription factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:11,749,312...11,776,103
Ensembl chr 7:11,749,168...11,773,340 		JBrowse link
G RFX3 regulatory factor X3 enables IEA Ensembl GO_REF:0000107 NCBI chr12:76,039,729...76,344,936
Ensembl chr12:76,096,465...76,338,204 		JBrowse link
G RFX6 regulatory factor X6 enables IEA Ensembl GO_REF:0000107 NCBI chr13:56,889,160...56,948,304
Ensembl chr13:56,889,780...56,946,413 		JBrowse link
G RNF10 ring finger protein 10 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:115,888,359...115,930,790
Ensembl chr11:115,893,457...115,930,848 		JBrowse link
G RUNX2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr17:26,679,386...26,807,812
Ensembl chr17:26,683,175...26,807,319 		JBrowse link
G RXRA retinoid X receptor alpha contributes_to
enables		 ISO (MGI:4399016|PMID:17107947)
(PMID:17107947)
(PMID:18511497)		 BHF-UCL PMID:17107947 PMID:18511497 MGI:4399016 NCBI chr12:3,704,129...3,814,707
Ensembl chr12:3,699,923...3,814,678 		JBrowse link
G RXRB retinoid X receptor beta enables ISO (MGI:4820711|PMID:18922886)
(PMID:18922886)		 UniProt PMID:18922886 MGI:4820711 NCBI chr17:38,874,467...38,881,527
Ensembl chr17:38,874,681...38,881,653 		JBrowse link
G SFPQ splicing factor proline and glutamine rich enables ISO (MGI:5014424|PMID:21680841)
(PMID:21680841)		 UniProt PMID:21680841 MGI:5014424 NCBI chr20:97,698,953...97,715,762
Ensembl chr20:97,698,411...97,711,294 		JBrowse link
G SIX1 SIX homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SMAD3 SMAD family member 3 enables ISO (PMID:9732876) BHF-UCL PMID:9732876 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SMAD4 SMAD family member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr18:29,894,157...29,951,445
Ensembl chr18:29,897,621...29,934,478 		JBrowse link
G SMAD6 SMAD family member 6 enables IEA Ensembl GO_REF:0000107 NCBI chr26:16,760,117...16,841,286
Ensembl chr26:16,759,260...16,840,240 		JBrowse link
G SMARCA2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:77,364,468...77,546,356
Ensembl chr12:77,375,500...77,546,314 		JBrowse link
G SOX10 SRY-box transcription factor 10 enables ISO PMID:26525805
(PMID:17084361)		 UniProt
MGI		 PMID:17084361 PMID:26525805 RGD:11251833 NCBI chr19:20,673,053...20,685,506 JBrowse link
G SOX11 SRY-box transcription factor 11 enables ISO (MGI:3803393|PMID:18505825)
(PMID:18505825)
PMID:12637543		 UniProt
GO_Central		 PMID:12637543 PMID:18505825 MGI:3803393 RGD:8554307 NCBI chr14:101,982,551...101,991,305
Ensembl chr14:101,989,895...101,991,220 		JBrowse link
G SOX12 SRY-box transcription factor 12 enables ISO (MGI:3803393|PMID:18505825) UniProt PMID:18505825 MGI:3803393 NCBI chr 2:35,454,287...35,457,481
Ensembl chr 2:35,454,655...35,455,599 		JBrowse link
G SOX13 SRY-box transcription factor 13 enables IEA Ensembl GO_REF:0000107 NCBI chr25:25,220,341...25,275,981
Ensembl chr25:25,221,945...25,235,449 		JBrowse link
G SOX17 SRY-box transcription factor 17 enables ISO (MGI:4887291|PMID:20802155), (MGI:4887547|PMID:19328208), (PMID:19515696), (PMID:20123909), (PMID:25209250), (PMID:8636240)
(PMID:19328208), (PMID:19515696), (PMID:20123909), (PMID:20802155), (PMID:25209250), (PMID:8636240)		 MGI
BHF-UCL		 PMID:8636240 PMID:19328208 PMID:19515696 PMID:20123909 PMID:20802155 More... MGI:4887291 MGI:4887547 NCBI chr 8:50,523,816...50,527,360
Ensembl chr 8:50,524,893...50,527,847 		JBrowse link
G SOX18 SRY-box transcription factor 18 enables ISO (PMID:18065521)
(PMID:14634005), (PMID:18931657)		 UniProt
MGI		 PMID:14634005 PMID:18065521 PMID:18931657 NCBI chr 2:195,418...197,221 JBrowse link
G SOX2 SRY-box transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr15:7,673,581...7,676,812
Ensembl chr15:7,674,867...7,675,826 		JBrowse link
G SOX5 SRY-box transcription factor 5 enables ISO (PMID:26525805)
(PMID:17084361)		 UniProt
MGI		 PMID:17084361 PMID:26525805 NCBI chr11:23,298,622...24,131,712
Ensembl chr11:23,303,325...23,715,492 		JBrowse link
G SOX6 SRY-box transcription factor 6 enables ISO (PMID:26525805)
(PMID:17084361)		 UniProt
MGI		 PMID:17084361 PMID:26525805 NCBI chr 1:48,206,243...48,955,819 JBrowse link
G SOX7 SRY-box transcription factor 7 enables ISO (MGI:4887547|PMID:19328208), (PMID:19515696)
(PMID:19328208), (PMID:19515696)		 MGI
BHF-UCL		 PMID:19328208 PMID:19515696 MGI:4887547 NCBI chr 8:8,368,632...8,375,529
Ensembl chr 8:8,368,912...8,375,530 		JBrowse link
G SOX9 SRY-box transcription factor 9 enables IEA Ensembl GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
G SP1 Sp1 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr11:49,484,459...49,516,941
Ensembl chr11:49,484,518...49,512,541 		JBrowse link
G SPI1 Spi-1 proto-oncogene enables IEA Ensembl GO_REF:0000107 NCBI chr 1:17,935,037...17,961,638
Ensembl chr 1:17,935,922...17,961,717 		JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 enables ISO (PMID:11739104) MGI PMID:11739104 NCBI chr19:24,364,725...24,439,851
Ensembl chr19:24,364,911...24,440,014 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 enables IEA Ensembl GO_REF:0000107 NCBI chr16:63,877,884...63,957,894
Ensembl chr16:63,922,862...63,957,984 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase enables ISO (MGI:5569417|PMID:24413057)
(PMID:24413057)		 UniProt PMID:24413057 MGI:5569417 NCBI chr  X:45,820,114...45,834,727
Ensembl chr  X:45,822,453...45,834,917 		JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase enables ISO (MGI:5569417|PMID:24413057) UniProt PMID:24413057 MGI:5569417 NCBI chr 9:14,900,503...14,924,017
Ensembl chr 9:14,900,945...14,923,447 		JBrowse link
G TAF2 TATA-box binding protein associated factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:114,291,325...114,395,189
Ensembl chr 8:114,290,866...114,395,537 		JBrowse link
G TAF7 TATA-box binding protein associated factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chr23:43,938,202...43,940,486
Ensembl chr23:43,938,714...43,939,763 		JBrowse link
G TAF9 TATA-box binding protein associated factor 9 enables ISO (PMID:19251649) BHF-UCL PMID:19251649 NCBI chr 4:65,451,038...65,455,896 JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor enables IEA Ensembl GO_REF:0000107 NCBI chr20:85,681,247...85,697,887
Ensembl chr20:85,688,155...85,694,829 		JBrowse link
G TBL1X transducin beta like 1 X-linked enables IEA Ensembl GO_REF:0000107 NCBI chr  X:7,921,674...8,173,139
Ensembl chr  X:8,091,125...8,173,679 		JBrowse link
G TBL1XR1 TBL1X/Y related 1 enables ISO (PMID:18193033)
(PMID:16127449)
(MGI:3604169|PMID:16127449)		 UniProt
BHF-UCL		 PMID:16127449 PMID:18193033 MGI:3604169 NCBI chr15:12,223,404...12,406,165
Ensembl chr15:12,224,226...12,402,908 		JBrowse link
G TBP TATA-box binding protein enables ISO (PMID:16540471), (PMID:7933101), (PMID:9027316) UniProt PMID:7933101 PMID:9027316 PMID:16540471 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G TBX21 T-box transcription factor 21 enables IEA Ensembl GO_REF:0000107 NCBI chr16:68,131,258...68,145,579
Ensembl chr16:68,131,536...68,144,415 		JBrowse link
G TCF12 transcription factor 12 contributes_to
enables		 ISO
IEA		 (PMID:11802795) BHF-UCL
Ensembl		 PMID:11802795 GO_REF:0000107 NCBI chr26:26,219,881...26,585,452
Ensembl chr26:26,218,496...26,583,684 		JBrowse link
G TCF20 transcription factor 20 enables ISO (PMID:7760812) MGI PMID:7760812 NCBI chr19:24,693,036...24,877,150
Ensembl chr19:24,692,374...24,853,507 		JBrowse link
G TCF3 transcription factor 3 contributes_to ISO (PMID:11802795) BHF-UCL PMID:11802795 NCBI chr 6:1,393,147...1,440,515
Ensembl chr 6:1,393,107...1,440,479 		JBrowse link
G TCF7 transcription factor 7 enables ISO (PMID:18579517), (PMID:20128911) UniProt PMID:18579517 PMID:20128911 NCBI chr23:36,919,648...36,953,088
Ensembl chr23:36,919,745...36,951,192 		JBrowse link
G TCF7L2 transcription factor 7 like 2 enables ISO (PMID:20128911)
(PMID:20044351)		 UniProt
MGI		 PMID:20044351 PMID:20128911 NCBI chr 9:105,828,834...106,047,810 JBrowse link
G TFAM transcription factor A, mitochondrial enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:72,900,665...72,914,634
Ensembl chr 9:72,904,637...72,914,397 		JBrowse link
G TFAP2A transcription factor AP-2 alpha enables ISO (PMID:12586840), (PMID:18718911), (PMID:31146003) ARUK-UCL PMID:12586840 PMID:18718911 PMID:31146003 NCBI chr17:61,750,757...61,769,041 JBrowse link
G TFAP4 transcription factor AP-4 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:3,931,288...3,960,039
Ensembl chr 5:3,932,149...3,954,486 		JBrowse link
G TFE3 transcription factor binding to IGHM enhancer 3 enables ISO (MGI:3662947|PMID:16936731)
(PMID:16936731)		 UniProt PMID:16936731 MGI:3662947 NCBI chr  X:46,141,377...46,155,445
Ensembl chr  X:46,140,543...46,155,372 		JBrowse link
G TFEB transcription factor EB enables IEA Ensembl GO_REF:0000107 NCBI chr17:30,425,893...30,478,954
Ensembl chr17:30,426,260...30,479,124 		JBrowse link
G THRA thyroid hormone receptor alpha enables ISO (PMID:18052923)
(MGI:5700300|PMID:19001373)		 BHF-UCL
ParkinsonsUK-UCL		 PMID:18052923 PMID:19001373 MGI:5700300 NCBI chr16:66,087,071...66,118,137 JBrowse link
G THRA thyroid hormone receptor alpha enables IEA Ensembl GO_REF:0000107 Ensembl chr16:66,085,067...66,118,079 JBrowse link
G TNF tumor necrosis factor enables ISO (PMID:17350185) UniProt PMID:17350185
G TP53 tumor protein p53 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TP63 tumor protein p63 enables IEA InterPro GO_REF:0000002 Ensembl chr15:84,093,957...84,123,905 JBrowse link
G TP73 tumor protein p73 enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr20:127,958,002...128,035,792
Ensembl chr20:127,958,809...128,013,691 		JBrowse link
G VSX1 visual system homeobox 1 enables IEA TreeGrafter GO_REF:0000118
G WT1 WT1 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:32,750,300...32,801,832 JBrowse link
G XBP1 X-box binding protein 1 enables ISO (MGI:3798313|PMID:18556558)
(PMID:18556558)
(PMID:23184933), (PMID:25190803)		 UniProt PMID:18556558 PMID:23184933 PMID:25190803 MGI:3798313 NCBI chr19:11,670,605...11,677,168 JBrowse link
G XRCC5 X-ray repair cross complementing 5 enables ISO (PMID:18809223) BHF-UCL PMID:18809223 NCBI chr10:101,952,909...102,051,059
Ensembl chr10:101,953,067...102,049,964 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 enables IEA Ensembl GO_REF:0000107 NCBI chr19:24,160,459...24,204,237
Ensembl chr19:24,160,483...24,206,320 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator enables ISO (PMID:18280240) UniProt PMID:18280240 NCBI chr 1:93,479,478...93,605,340
Ensembl chr 1:93,479,135...93,606,808 		JBrowse link
G YY1 YY1 transcription factor enables ISO (PMID:9857059) MGI PMID:9857059 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
G ZBED2 zinc finger BED-type containing 2 enables IEA Ensembl GO_REF:0000107 NCBI chr22:69,197,522...69,201,324
Ensembl chr22:69,199,247...69,199,903 		JBrowse link
G ZBED4 zinc finger BED-type containing 4 enables ISO (MGI:6234760|PMID:22693546)
(PMID:22693546)		 UniProt PMID:22693546 MGI:6234760 NCBI chr19:32,349,021...32,382,481
Ensembl chr19:32,377,676...32,381,191 		JBrowse link
G ZBED6 zinc finger BED-type containing 6 enables ISO (MGI:4421252|PMID:20016685), (MGI:6120647|PMID:29440408) ARUK-UCL PMID:20016685 PMID:29440408 MGI:4421252 MGI:6120647 NCBI chr25:25,541,014...25,547,258
Ensembl chr25:25,543,414...25,546,344 		JBrowse link
G ZBTB14 zinc finger and BTB domain containing 14 enables IEA Ensembl GO_REF:0000107 NCBI chr18:64,388,984...64,398,969
Ensembl chr18:64,389,055...64,394,938 		JBrowse link
G ZBTB20 zinc finger and BTB domain containing 20 enables IEA Ensembl GO_REF:0000107 NCBI chr22:65,715,470...66,528,195
Ensembl chr22:66,511,237...66,524,064 		JBrowse link
G ZBTB46 zinc finger and BTB domain containing 46 enables ISO (MGI:5461437|PMID:22851594)
(PMID:22851594)		 ARUK-UCL PMID:22851594 MGI:5461437 NCBI chr 2:397,663...487,145
Ensembl chr 2:398,268...483,923 		JBrowse link
G ZBTB48 zinc finger and BTB domain containing 48 enables ISO (PMID:28500257) UniProt PMID:28500257 NCBI chr20:125,157,938...125,167,037
Ensembl chr20:125,157,860...125,167,014 		JBrowse link
G ZBTB8A zinc finger and BTB domain containing 8A enables IEA Ensembl GO_REF:0000107 NCBI chr20:100,275,016...100,345,029
Ensembl chr20:100,275,390...100,339,445 		JBrowse link
G ZFHX3 zinc finger homeobox 3 enables ISO (PMID:11312261) UniProt PMID:11312261 NCBI chr 5:55,912,325...56,174,010
Ensembl chr 5:55,907,983...56,085,112 		JBrowse link
G ZNF148 zinc finger protein 148 ISO RGD PMID:8943318 RGD:61784 NCBI chr22:55,467,453...55,609,050 JBrowse link
G ZNF174 zinc finger protein 174 enables ISO (PMID:7673192) UniProt PMID:7673192 NCBI chr 5:3,106,901...3,114,690
Ensembl chr 5:3,106,981...3,116,524 		JBrowse link
G ZNF217 zinc finger protein 217 enables ISO (PMID:18625718) UniProt PMID:18625718 NCBI chr 2:10,427,584...10,455,308
Ensembl chr 2:10,439,082...10,450,670 		JBrowse link
G ZNF263 zinc finger protein 263 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:3,005,686...3,015,341
Ensembl chr 5:3,007,305...3,014,449 		JBrowse link
G ZNF281 zinc finger protein 281 enables ISO (PMID:10448078) UniProt PMID:10448078 NCBI chr25:29,011,153...29,016,298
Ensembl chr25:29,011,516...29,014,215 		JBrowse link
G ZNF335 zinc finger protein 335 enables ISO (MGI:5468205|PMID:23178126) UniProt PMID:23178126 MGI:5468205 NCBI chr 2:17,912,892...17,937,546
Ensembl chr 2:17,914,387...17,937,313 		JBrowse link
G ZNF513 zinc finger protein 513 enables IEA Ensembl GO_REF:0000107 NCBI chr14:80,230,849...80,234,354
Ensembl chr14:80,231,062...80,234,046 		JBrowse link
G ZNF579 zinc finger protein 579 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:48,164,925...48,168,822
Ensembl chr 6:48,165,819...48,167,513 		JBrowse link
G ZNF639 zinc finger protein 639 enables ISO (PMID:20484494) UniProt PMID:20484494 NCBI chr15:10,102,800...10,107,108 JBrowse link
G ZNF658 zinc finger protein 658 enables IEA Ensembl GO_REF:0000107 NCBI chr12:105,381,826...105,402,567
Ensembl chr12:105,389,572...105,401,659 		JBrowse link
G ZNF746 zinc finger protein 746 enables ISO (PMID:21376232) UniProt PMID:21376232 NCBI chr21:118,032,767...118,058,205
Ensembl chr21:118,034,356...118,058,029 		JBrowse link
G ZNF808 zinc finger protein 808 enables IEA Ensembl GO_REF:0000107 Ensembl chr 6:45,279,250...45,289,918 JBrowse link
cAMP response element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF2 activating transcription factor 2 enables ISO
IEA		 RGD
TreeGrafter		 PMID:12196528 GO_REF:0000118 RGD:727574 NCBI chr10:60,644,623...60,734,465
Ensembl chr10:60,644,635...60,734,475 		JBrowse link
G CREB1 cAMP responsive element binding protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:93,316,774...93,395,187
Ensembl chr10:93,316,840...93,388,832 		JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:19,009,169...19,054,841
Ensembl chr 1:19,009,035...19,054,804 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:106,572,893...106,705,080
Ensembl chr21:106,578,422...106,705,089 		JBrowse link
G CREB5 cAMP responsive element binding protein 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:29,542,030...29,960,393
Ensembl chr21:29,548,662...29,902,289 		JBrowse link
G E4F1 E4F transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:2,117,936...2,130,787
Ensembl chr 5:2,117,479...2,130,623 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:14645522) UniProt PMID:14645522 NCBI chr11:61,509,114...61,655,633 JBrowse link
G JDP2 Jun dimerization protein 2 enables ISO (PMID:11231009) MGI PMID:11231009 NCBI chr24:52,668,837...52,702,257
Ensembl chr24:52,669,162...52,702,521 		JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit enables ISO (PMID:19861239) BHF-UCL PMID:19861239 NCBI chr20:74,204,481...74,207,835
Ensembl chr20:74,205,542...74,206,546 		JBrowse link
G LOC103238406 cyclic AMP-dependent transcription factor ATF-7 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:49,608,653...49,728,702
Ensembl chr11:49,618,136...49,728,289 		JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 enables ISO (MGI:5543879|PMID:23897430)
(PMID:23897430)		 UniProt PMID:23897430 MGI:5543879 NCBI chr12:39,568,085...39,611,704
Ensembl chr12:39,567,852...39,606,837 		JBrowse link
G TCF12 transcription factor 12 ISO RGD PMID:7683670 RGD:729997 NCBI chr26:26,219,881...26,585,452
Ensembl chr26:26,218,496...26,583,684 		JBrowse link
cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor enables IEA Ensembl GO_REF:0000107 NCBI chr21:40,778,198...40,826,491
Ensembl chr21:40,778,218...40,826,478 		JBrowse link
G ARNT aryl hydrocarbon receptor nuclear translocator enables IEA Ensembl GO_REF:0000107
G ATF2 activating transcription factor 2 enables ISO (PMID:2196176) UniProt PMID:2196176 NCBI chr10:60,644,623...60,734,465
Ensembl chr10:60,644,635...60,734,475 		JBrowse link
G CTCF CCCTC-binding factor enables ISO (PMID:28636939) MGI PMID:28636939 NCBI chr 5:59,806,753...59,889,534
Ensembl chr 5:59,806,551...59,880,049 		JBrowse link
G CXXC1 CXXC finger protein 1 ISO RGD PMID:21814290 RGD:9587757 NCBI chr18:30,668,879...30,674,841
Ensembl chr18:30,668,821...30,675,301 		JBrowse link
G DMRT1 doublesex and mab-3 related transcription factor 1 enables ISO (MGI:4818833|PMID:20616082), (MGI:4839662|PMID:20951351)
(PMID:20616082), (PMID:20951351)		 UniProt PMID:20616082 PMID:20951351 MGI:4818833 MGI:4839662 NCBI chr12:78,551,312...78,679,517 JBrowse link
G DMRT1 doublesex and mab-3 related transcription factor 1 enables IEA Ensembl GO_REF:0000107 Ensembl chr12:78,551,281...78,678,284 JBrowse link
G E2F1 E2F transcription factor 1 enables ISO (PMID:15735762) UniProt PMID:15735762 NCBI chr 2:37,968,541...37,980,461
Ensembl chr 2:37,968,556...37,980,326 		JBrowse link
G E2F2 E2F transcription factor 2 enables ISO (PMID:15735762) UniProt PMID:15735762 NCBI chr20:109,146,567...109,171,540
Ensembl chr20:109,146,587...109,168,093 		JBrowse link
G E2F3 E2F transcription factor 3 enables ISO (PMID:15735762) UniProt PMID:15735762 NCBI chr17:51,714,052...51,805,827 JBrowse link
G E2F7 E2F transcription factor 7 enables ISO (PMID:22903062) UniProt PMID:22903062 NCBI chr11:72,598,220...72,642,366
Ensembl chr11:72,599,353...72,641,420 		JBrowse link
G E2F8 E2F transcription factor 8 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:45,751,937...45,772,698
Ensembl chr 1:45,756,301...45,772,632 		JBrowse link
G ELL elongation factor for RNA polymerase II enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:16,915,878...17,000,275
Ensembl chr 6:16,917,953...17,000,230 		JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:89,758,483...89,835,773
Ensembl chr 4:89,762,251...89,835,433 		JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:39,268,461...39,273,833
Ensembl chr26:39,269,538...39,273,321 		JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:19057620 RGD:2311715 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G EPAS1 endothelial PAS domain protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:60,823,110...60,912,804
Ensembl chr14:60,822,815...60,912,785 		JBrowse link
G ESRRB estrogen related receptor beta enables ISO (MGI:5529430|PMID:23508100), (MGI:5887187|PMID:26206133)
(PMID:23508100), (PMID:26206133)		 UniProt PMID:23508100 PMID:26206133 MGI:5529430 MGI:5887187 NCBI chr24:53,630,998...53,762,098 JBrowse link
G FOXN2 forkhead box N2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:58,783,009...58,848,672
Ensembl chr14:58,782,897...58,835,451 		JBrowse link
G FOXN3 forkhead box N3 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr24:66,834,410...67,103,656 JBrowse link
G FOXN4 forkhead box N4 enables ISO (PMID:22323600)
(MGI:5314555|PMID:22323600)		 UniProt PMID:22323600 MGI:5314555 NCBI chr11:104,499,654...104,536,338
Ensembl chr11:104,499,633...104,534,275 		JBrowse link
G GATA1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:45,912,638...45,920,415
Ensembl chr  X:45,917,231...45,920,268 		JBrowse link
G GATA3 GATA binding protein 3 enables ISO (PMID:19232384)
(PMID:19666510), (PMID:20855530)
(MGI:5009777|PMID:20855530), (PMID:19666510)		 UniProt
MGI		 PMID:19232384 PMID:19666510 PMID:20855530 MGI:5009777 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G GATA4 GATA binding protein 4 enables ISO PMID:20855530 UniProt PMID:20855530 RGD:8554432 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GATA5 GATA binding protein 5 enables ISO (MGI:5009777|PMID:20855530)
(PMID:20855530)		 UniProt PMID:20855530 MGI:5009777 NCBI chr 2:1,756,911...1,769,452
Ensembl chr 2:1,757,420...1,768,143 		JBrowse link
G GATA6 GATA binding protein 6 enables ISO PMID:20855530 UniProt PMID:20855530 RGD:8554432 NCBI chr18:58,312,328...58,345,472
Ensembl chr18:58,311,482...58,343,746 		JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 enables ISO (PMID:18239137) BHF-UCL PMID:18239137 NCBI chr 8:75,225,081...75,228,941
Ensembl chr 8:75,224,769...75,228,896 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 enables IEA Ensembl GO_REF:0000107 NCBI chr13:47,965,808...47,977,435
Ensembl chr13:47,964,847...47,977,346 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:9253416) CAFA PMID:9253416 NCBI chr17:37,848,110...37,857,835
Ensembl chr17:37,849,412...37,853,880 		JBrowse link
G HMGB2 high mobility group box 2 enables ISO (MGI:5490149|PMID:23495099)
(PMID:23495099)		 AgBase PMID:23495099 MGI:5490149 NCBI chr 7:119,440,089...119,442,806
Ensembl chr 7:119,440,468...119,443,578 		JBrowse link
G HNF1B HNF1 homeobox B enables ISO
IEA		 RGD
Ensembl		 PMID:1673926 GO_REF:0000107 RGD:729944 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha ISO RGD PMID:16640558 RGD:12904755 NCBI chr 2:19,390,870...19,466,300
Ensembl chr 2:19,388,891...19,421,664 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G HOXA13 homeobox A13 enables IEA Ensembl GO_REF:0000107 NCBI chr21:31,168,239...31,175,960
Ensembl chr21:31,168,793...31,173,056 		JBrowse link
G HOXD13 homeobox D13 enables IEA Ensembl GO_REF:0000107 NCBI chr10:61,662,670...61,670,955
Ensembl chr10:61,667,880...61,669,743 		JBrowse link
G IRF4 interferon regulatory factor 4 enables ISO (MGI:6269211|PMID:30413670)
(PMID:30413670)		 ARUK-UCL PMID:30413670 MGI:6269211 NCBI chr17:71,739,920...71,758,811 JBrowse link
G IRF4 interferon regulatory factor 4 enables IEA Ensembl GO_REF:0000107 Ensembl chr17:71,751,770...71,757,496 JBrowse link
G IRF7 interferon regulatory factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:430,412...433,959
Ensembl chr 1:429,310...432,925 		JBrowse link
G ISL1 ISL LIM homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:47,665,861...47,678,631
Ensembl chr 4:47,666,536...47,677,552 		JBrowse link
G ISL2 ISL LIM homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr26:6,940,218...6,946,007
Ensembl chr26:6,940,850...6,945,786 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables ISO (PMID:15545629) MGI PMID:15545629 NCBI chr 7:55,974,770...56,096,214
Ensembl chr 7:55,990,621...56,094,110 		JBrowse link
G LHX1 LIM homeobox 1 enables ISO (PMID:26494787) MGI PMID:26494787 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103216393 paired box protein Pax-2 enables ISO (PMID:19118900)
(PMID:17785448)
(MGI:3768605|PMID:17785448)		 UniProt PMID:17785448 PMID:19118900 MGI:3768605 NCBI chr 9:93,763,975...93,847,180 JBrowse link
G LOC103239432 myoblast determination protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:47,250,927...47,254,572
Ensembl chr 1:47,251,551...47,253,284 		JBrowse link
G MEF2C myocyte enhancer factor 2C enables ISO (PMID:16140986), (PMID:20399744) MGI PMID:16140986 PMID:20399744 NCBI chr 4:82,702,378...82,887,491
Ensembl chr 4:82,706,738...82,788,152 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr29:8,286,551...8,288,777
Ensembl chr29:8,286,828...8,287,918 		JBrowse link
G MIXL1 Mix paired-like homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr25:3,542,923...3,546,561
Ensembl chr25:3,544,169...3,546,305 		JBrowse link
G MSX1 msh homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr27:41,028,763...41,032,676
Ensembl chr27:41,028,919...41,033,006 		JBrowse link
G MTF1 metal regulatory transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:95,002,623...95,052,366
Ensembl chr20:95,003,504...95,046,718 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor enables ISO (PMID:15511642) MGI PMID:15511642 NCBI chr 8:122,282,989...122,288,392
Ensembl chr 8:122,282,630...122,288,384 		JBrowse link
G MYOG myogenin enables IEA Ensembl GO_REF:0000107 NCBI chr25:26,264,872...26,269,652
Ensembl chr25:26,266,717...26,268,867 		JBrowse link
G MYT1 myelin transcription factor 1 enables ISO (PMID:17442045) MGI PMID:17442045 NCBI chr 2:59,574...96,113
Ensembl chr 2:61,371...96,583 		JBrowse link
G NFE2 nuclear factor, erythroid 2 contributes_to ISO (PMID:16263792) GO_Central PMID:16263792 NCBI chr11:50,409,023...50,417,931
Ensembl chr11:50,408,984...50,417,863 		JBrowse link
G NFIC nuclear factor I C ISO RGD PMID:10521600 RGD:633408 NCBI chr 6:3,128,553...3,232,485
Ensembl chr 6:3,135,480...3,227,601 		JBrowse link
G NKX2-2 NK2 homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:50,499,802...50,511,309
Ensembl chr 2:50,500,691...50,502,438 		JBrowse link
G NOTCH1 notch receptor 1 enables ISO (PMID:18239137) BHF-UCL PMID:18239137 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
G NOTCH2 notch receptor 2 enables ISO (PMID:18239137) BHF-UCL PMID:18239137 NCBI chr20:13,712,140...13,871,777
Ensembl chr20:13,712,292...13,871,784 		JBrowse link
G NOTCH4 notch receptor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr17:39,806,864...39,837,101
Ensembl chr17:39,808,035...39,837,365 		JBrowse link
G NR1D2 nuclear receptor subfamily 1 group D member 2 enables ISO (MGI:5526909|PMID:23221024), (MGI:5526936|PMID:19682428)
(PMID:19682428), (PMID:23221024)		 UniProt PMID:19682428 PMID:23221024 MGI:5526909 MGI:5526936 NCBI chr15:68,632,142...68,668,467
Ensembl chr15:68,632,197...68,665,258 		JBrowse link
G PAX2 paired box 2 enables IEA Ensembl GO_REF:0000107 Ensembl chr 9:93,767,514...93,844,326 JBrowse link
G POU5F1 POU class 5 homeobox 1 enables ISO (MGI:5490149|PMID:23495099)
(PMID:23495099)		 AgBase PMID:23495099 MGI:5490149 NCBI chr17:41,306,523...41,313,065 JBrowse link
G RUNX2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr17:26,679,386...26,807,812
Ensembl chr17:26,683,175...26,807,319 		JBrowse link
G SALL1 spalt like transcription factor 1 enables ISO (MGI:4946171|PMID:21062744) BHF-UCL PMID:21062744 MGI:4946171 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SCX scleraxis bHLH transcription factor enables ISO (PMID:17430895) MGI PMID:17430895 NCBI chr 8:138,476,902...138,482,185
Ensembl chr 8:138,478,458...138,480,459 		JBrowse link
G SERINC4 serine incorporator 4 enables ISO (MGI:5448843|PMID:23273992)
(PMID:23273992)		 UniProt PMID:23273992 MGI:5448843 NCBI chr26:39,244,701...39,249,986
Ensembl chr26:39,244,783...39,249,776 		JBrowse link
G SMAD3 SMAD family member 3 enables ISO (PMID:32141990)
(PMID:21947082)		 BHF-UCL
UniProt		 PMID:21947082 PMID:32141990 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 enables ISO (PMID:28636939) MGI PMID:28636939 NCBI chr 9:103,506,779...103,543,836
Ensembl chr 9:103,506,689...103,545,523 		JBrowse link
G SOX11 SRY-box transcription factor 11 enables ISO (MGI:5285123|PMID:21527504), (MGI:5285167|PMID:19808959)
(PMID:19808959), (PMID:21527504)		 UniProt PMID:19808959 PMID:21527504 MGI:5285123 MGI:5285167 NCBI chr14:101,982,551...101,991,305
Ensembl chr14:101,989,895...101,991,220 		JBrowse link
G SOX5 SRY-box transcription factor 5 enables ISO PMID:26150426 UniProt PMID:26150426 RGD:11526869 NCBI chr11:23,298,622...24,131,712
Ensembl chr11:23,303,325...23,715,492 		JBrowse link
G SOX6 SRY-box transcription factor 6 enables ISO PMID:26150426 UniProt PMID:26150426 RGD:11526869 NCBI chr 1:48,206,243...48,955,819 JBrowse link
G SOX8 SRY-box transcription factor 8 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:877,988...883,278
Ensembl chr 5:878,217...881,662 		JBrowse link
G SOX9 SRY-box transcription factor 9 enables IEA Ensembl GO_REF:0000107 NCBI chr16:49,519,749...49,523,967
Ensembl chr16:49,518,185...49,523,898 		JBrowse link
G SP1 Sp1 transcription factor enables ISO (PMID:15511642), (PMID:19943855), (PMID:9705320) MGI PMID:9705320 PMID:15511642 PMID:19943855 NCBI chr11:49,484,459...49,516,941
Ensembl chr11:49,484,518...49,512,541 		JBrowse link
G SP3 Sp3 transcription factor enables ISO (PMID:15511642), (PMID:19943855) MGI PMID:15511642 PMID:19943855 NCBI chr10:59,414,739...59,471,596
Ensembl chr10:59,416,152...59,470,456 		JBrowse link
G SPI1 Spi-1 proto-oncogene enables IEA Ensembl GO_REF:0000107 NCBI chr 1:17,935,037...17,961,638
Ensembl chr 1:17,935,922...17,961,717 		JBrowse link
G SRF serum response factor enables IEA InterPro GO_REF:0000002 NCBI chr17:28,983,161...28,993,465
Ensembl chr17:28,983,002...28,992,995 		JBrowse link
G TBX19 T-box transcription factor 19 enables IEA Ensembl GO_REF:0000107 NCBI chr25:60,732,455...60,803,194
Ensembl chr25:60,730,901...60,764,487 		JBrowse link
G TCF3 transcription factor 3 enables ISO (PMID:16140986) MGI PMID:16140986 NCBI chr 6:1,393,147...1,440,515
Ensembl chr 6:1,393,107...1,440,479 		JBrowse link
G TFAP2A transcription factor AP-2 alpha enables ISO (PMID:19943855) MGI PMID:19943855 NCBI chr17:61,750,757...61,769,041 JBrowse link
G TFAP2B transcription factor AP-2 beta enables ISO (PMID:16373396) UniProt PMID:16373396 NCBI chr17:21,599,570...21,629,757
Ensembl chr17:21,604,067...21,628,489 		JBrowse link
G TFCP2 transcription factor CP2 enables IEA Ensembl GO_REF:0000107 NCBI chr11:47,303,801...47,373,724
Ensembl chr11:47,303,796...47,373,344 		JBrowse link
G TFDP1 transcription factor Dp-1 enables ISO (PMID:15448153) MGI PMID:15448153 NCBI chr 3:91,552,083...91,608,978
Ensembl chr 3:91,581,401...91,607,864 		JBrowse link
G TIPARP TCDD inducible poly(ADP-ribose) polymerase enables IEA Ensembl GO_REF:0000107 NCBI chr15:34,041,208...34,073,428
Ensembl chr15:34,039,657...34,073,319 		JBrowse link
G TP53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:4,592,362...4,642,179
Ensembl chr 6:4,592,919...4,642,445 		JBrowse link
G XBP1 X-box binding protein 1 enables ISO (PMID:2196176) UniProt PMID:2196176 NCBI chr19:11,670,605...11,677,168 JBrowse link
G YY1 YY1 transcription factor enables ISO (PMID:15329343)
(PMID:16260628)		 AgBase
UniProt		 PMID:15329343 PMID:16260628 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
G YY2 YY2 transcription factor enables ISO (PMID:16260628)
(MGI:3607410|PMID:16260628)		 UniProt PMID:16260628 MGI:3607410 NCBI chr  X:20,337,022...20,338,701 JBrowse link
G ZBTB7B zinc finger and BTB domain containing 7B enables IEA Ensembl GO_REF:0000107 NCBI chr20:8,812,514...8,829,128
Ensembl chr20:8,812,351...8,817,286 		JBrowse link
G ZNF322 zinc finger protein 322 enables ISO (MGI:6114965|PMID:24550733)
(PMID:24550733)		 UniProt PMID:24550733 MGI:6114965 NCBI chr17:45,560,042...45,585,154
Ensembl chr17:45,580,979...45,582,184 		JBrowse link
G ZNF395 zinc finger protein 395 enables ISO (PMID:11853404)
(PMID:17693064)		 ARUK-UCL
MGI		 PMID:11853404 PMID:17693064 NCBI chr 8:26,446,879...26,502,227
Ensembl chr 8:26,446,693...26,481,124 		JBrowse link
G ZNF516 zinc finger protein 516 enables IEA Ensembl GO_REF:0000107 NCBI chr18:3,449,624...3,588,105
Ensembl chr18:3,504,027...3,583,816 		JBrowse link
G ZNF704 zinc finger protein 704 enables ISO (PMID:17693064) MGI PMID:17693064 NCBI chr 8:76,063,488...76,311,154
Ensembl chr 8:76,076,400...76,316,208 		JBrowse link
core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:96,929,985...96,971,074
Ensembl chr20:96,934,659...96,971,014 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:134,761,651...134,855,971
Ensembl chr 8:134,767,182...134,823,070 		JBrowse link
G DRAP1 DR1 associated protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:8,336,085...8,338,393
Ensembl chr 1:8,335,949...8,338,446 		JBrowse link
G FOXP1 forkhead box P1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:31,907,941...32,538,294
Ensembl chr22:31,912,460...32,154,502 		JBrowse link
G HDAC1 histone deacetylase 1 enables ISO (PMID:23629966) CAFA PMID:23629966 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G ISL1 ISL LIM homeobox 1 ISO RGD PMID:11043578 RGD:8554127 NCBI chr 4:47,665,861...47,678,631
Ensembl chr 4:47,666,536...47,677,552 		JBrowse link
G JPH2 junctophilin 2 enables ISO (MGI:6270069|PMID:30409805) UniProt PMID:30409805 MGI:6270069 NCBI chr 2:19,626,035...19,703,589
Ensembl chr 2:19,626,832...19,703,765 		JBrowse link
G KCNIP3 potassium voltage-gated channel interacting protein 3 enables ISO (MGI:5882899|PMID:15746104)
(PMID:15746104)		 CAFA PMID:15746104 MGI:5882899 NCBI chr14:329,142...420,937
Ensembl chr14:412,055...418,908 		JBrowse link
G KLF10 KLF transcription factor 10 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:97,496,695...97,503,818
Ensembl chr 8:97,496,678...97,503,620 		JBrowse link
G MMP12 matrix metallopeptidase 12 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:94,243,061...94,261,035
Ensembl chr 1:94,243,875...94,259,591 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 8:122,282,989...122,288,392
Ensembl chr 8:122,282,630...122,288,384 		JBrowse link
G NKX2-1 NK2 homeobox 1 enables ISO PMID:9425125 CAFA PMID:9425125 RGD:12792996 NCBI chr24:13,274,118...13,317,533
Ensembl chr24:13,310,846...13,317,056 		JBrowse link
G NPM1 nucleophosmin 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:45,904,926...46,031,804
Ensembl chr23:45,904,873...46,031,125 		JBrowse link
G POLR2A RNA polymerase II subunit A enables IEA Ensembl GO_REF:0000107 NCBI chr16:6,860,487...6,889,054
Ensembl chr16:6,860,677...6,888,618 		JBrowse link
G SNAPC3 small nuclear RNA activating complex polypeptide 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:64,138,326...64,181,434
Ensembl chr12:64,141,459...64,181,421 		JBrowse link
G TAF4 TATA-box binding protein associated factor 4 contributes_to
enables		 ISO
IEA		 (PMID:15601843) GO_Central
Ensembl		 PMID:15601843 GO_REF:0000107 NCBI chr 2:2,167,585...2,252,383
Ensembl chr 2:2,167,341...2,252,156 		JBrowse link
G TBP TATA-box binding protein enables ISO (PMID:9841876) CAFA PMID:9841876 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G TP53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G ZBTB17 zinc finger and BTB domain containing 17 enables ISO (PMID:19160485) CAFA PMID:19160485 NCBI chr20:116,324,794...116,358,600 JBrowse link
E-box binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor enables ISO (MGI:4820700|PMID:20106950)
(PMID:20106950)		 UniProt PMID:20106950 MGI:4820700 NCBI chr21:40,778,198...40,826,491
Ensembl chr21:40,778,218...40,826,478 		JBrowse link
G ASCL1 achaete-scute family bHLH transcription factor 1 enables ISO (PMID:10903890), (PMID:11736660) UniProt PMID:10903890 PMID:11736660 NCBI chr11:98,182,213...98,185,057
Ensembl chr11:98,182,787...98,183,506 		JBrowse link
G ASCL2 achaete-scute family bHLH transcription factor 2 enables ISO (PMID:14561729) UniProt PMID:14561729 NCBI chr 1:2,075,629...2,080,462
Ensembl chr 1:2,076,851...2,077,432 		JBrowse link
G ATOH1 atonal bHLH transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:42,098,057...42,104,910
Ensembl chr 7:42,100,996...42,102,060 		JBrowse link
G ATOH7 atonal bHLH transcription factor 7 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:63,155,182...63,158,935
Ensembl chr 9:63,157,638...63,158,096 		JBrowse link
G ATOH8 atonal bHLH transcription factor 8 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:21,368,197...21,402,650 JBrowse link
G BHLHA15 basic helix-loop-helix family member a15 enables IEA TreeGrafter GO_REF:0000118 NCBI chr28:14,953,483...14,957,674
Ensembl chr28:14,956,095...14,956,679 		JBrowse link
G BHLHE22 basic helix-loop-helix family member e22 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:60,476,555...60,483,693
Ensembl chr 8:60,480,825...60,481,976 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,215,909...1,221,960
Ensembl chr 2:1,216,206...1,216,883 		JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 enables ISO (PMID:12397359), (PMID:12624110), (PMID:14672706), (PMID:15193144), (PMID:15560782), (PMID:18411297), (PMID:28797635)
(PMID:12397359), (PMID:15147242), (PMID:17487425), (PMID:30012868)
(MGI:2388855|PMID:12397359), (MGI:5297789|PMID:15147242), (MGI:5306297|PMID:17487425), (MGI:6282958|PMID:30012868)		 UniProt PMID:12397359 PMID:12624110 PMID:14672706 PMID:15147242 PMID:15193144 More... MGI:2388855 MGI:5297789 MGI:5306297 MGI:6282958 NCBI chr22:41,049,673...41,055,365
Ensembl chr22:41,049,712...41,055,360 		JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 enables IEA Ensembl GO_REF:0000107 NCBI chr11:25,872,139...25,879,985
Ensembl chr11:25,874,108...25,876,826 		JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 enables ISO (PMID:12738229), (PMID:23785138)
(PMID:19605937), (PMID:20106950), (PMID:24736997)
(MGI:4410413|PMID:19605937), (MGI:4820700|PMID:20106950), (MGI:5568140|PMID:24736997)		 UniProt PMID:12738229 PMID:19605937 PMID:20106950 PMID:23785138 PMID:24736997 MGI:4410413 MGI:4820700 MGI:5568140 NCBI chr 1:51,430,670...51,540,344
Ensembl chr 1:51,431,180...51,462,674 		JBrowse link
G BMAL2 basic helix-loop-helix ARNT like 2 enables ISO (MGI:4410413|PMID:19605937)
(PMID:19605937)
(PMID:12738229)		 UniProt PMID:12738229 PMID:19605937 MGI:4410413 NCBI chr11:27,067,523...27,141,740
Ensembl chr11:27,067,604...27,136,466 		JBrowse link
G CIART circadian associated repressor of transcription enables IEA Ensembl GO_REF:0000107
G CLOCK clock circadian regulator enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:13,015,198...13,134,741
Ensembl chr 7:13,051,454...13,127,240 		JBrowse link
G CRY1 cryptochrome circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:102,200,822...102,306,165
Ensembl chr11:102,204,224...102,306,182 		JBrowse link
G FIGLA folliculogenesis specific bHLH transcription factor contributes_to
enables		 ISO
IEA		 (PMID:15044608) UniProt
Ensembl		 PMID:15044608 GO_REF:0000107 NCBI chr14:36,320,167...36,334,099
Ensembl chr14:36,321,125...36,334,042 		JBrowse link
G GATA3 GATA binding protein 3 enables ISO (PMID:20855495) BHF-UCL PMID:20855495 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 contributes_to
enables		 ISO
IEA		 (MGI:4362015|PMID:11812799)
(PMID:11812799)		 BHF-UCL
Ensembl		 PMID:11812799 GO_REF:0000107 MGI:4362015 NCBI chr 7:119,635,697...119,639,415
Ensembl chr 7:119,634,741...119,638,546 		JBrowse link
G HDAC1 histone deacetylase 1 enables ISO (MGI:5568140|PMID:24736997)
(PMID:24736997)		 UniProt PMID:24736997 MGI:5568140 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G HES1 hes family bHLH transcription factor 1 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:19670267 GO_REF:0000107 GO_REF:0000118 RGD:9685170 NCBI chr15:88,220,093...88,222,563
Ensembl chr15:88,220,083...88,223,243 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G LOC103239432 myoblast determination protein 1 enables ISO
IEA		 RGD
Ensembl		 PMID:11600477 GO_REF:0000107 RGD:9686083 NCBI chr 1:47,250,927...47,254,572
Ensembl chr 1:47,251,551...47,253,284 		JBrowse link
G MAX MYC associated factor X enables IEA Ensembl GO_REF:0000107 NCBI chr24:42,288,891...42,314,711
Ensembl chr24:42,291,106...42,314,605 		JBrowse link
G MITF melanocyte inducing transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr22:30,747,747...30,971,951
Ensembl chr22:30,748,440...30,972,168 		JBrowse link
G MYBBP1A MYB binding protein 1a enables IEA Ensembl GO_REF:0000107 NCBI chr16:4,019,823...4,036,811
Ensembl chr16:4,016,222...4,036,782 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 8:122,282,989...122,288,392
Ensembl chr 8:122,282,630...122,288,384 		JBrowse link
G MYOG myogenin enables IEA Ensembl GO_REF:0000107 NCBI chr25:26,264,872...26,269,652
Ensembl chr25:26,266,717...26,268,867 		JBrowse link
G NEUROD1 neuronal differentiation 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:67,203,714...67,208,644
Ensembl chr10:67,205,141...67,206,211 		JBrowse link
G NEUROD2 neuronal differentiation 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:66,557,831...66,563,757
Ensembl chr16:66,560,957...66,562,105 		JBrowse link
G NEUROD6 neuronal differentiation 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:27,042,482...27,049,611
Ensembl chr21:27,047,809...27,048,822 		JBrowse link
G NEUROG1 neurogenin 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr23:38,318,432...38,320,099
Ensembl chr23:38,319,121...38,319,834 		JBrowse link
G NEUROG2 neurogenin 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:60,296,442...60,299,093
Ensembl chr 7:60,297,586...60,298,404 		JBrowse link
G NEUROG3 neurogenin 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:61,743,562...61,746,884
Ensembl chr 9:61,744,332...61,744,979 		JBrowse link
G NPAS2 neuronal PAS domain protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:4,529,048...4,705,167
Ensembl chr14:4,612,225...4,705,419 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 enables ISO (MGI:3819720|PMID:18565334) UniProt PMID:18565334 MGI:3819720 NCBI chr16:66,078,990...66,086,927
Ensembl chr16:66,079,089...66,090,685 		JBrowse link
G OLIG1 oligodendrocyte transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:59,107,916...59,110,601
Ensembl chr 2:59,109,287...59,110,102 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:59,151,151...59,161,253
Ensembl chr 2:59,152,487...59,153,458 		JBrowse link
G OLIG3 oligodendrocyte transcription factor 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:35,925,356...35,926,211
Ensembl chr13:35,925,373...35,926,194 		JBrowse link
G PER1 period circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:7,520,122...7,536,176
Ensembl chr16:7,520,006...7,531,940 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables ISO (MGI:3830801|PMID:19041764)
(PMID:19041764)		 UniProt PMID:19041764 MGI:3830801 NCBI chr22:48,262,743...48,407,415
Ensembl chr22:48,275,600...48,407,418 		JBrowse link
G PRMT5 protein arginine methyltransferase 5 enables ISO (MGI:5464222|PMID:23133559) UniProt PMID:23133559 MGI:5464222 NCBI chr29:23,288,458...23,297,746
Ensembl chr29:23,288,835...23,297,518 		JBrowse link
G PTF1A pancreas associated transcription factor 1a enables IEA Ensembl GO_REF:0000107 NCBI chr 9:22,944,122...22,965,905
Ensembl chr 9:22,964,164...22,965,565 		JBrowse link
G SCX scleraxis bHLH transcription factor contributes_to
enables		 ISO (MGI:5294531|PMID:19828133)
(PMID:19828133)
(PMID:20059955), (PMID:7743923)
(MGI:4418577|PMID:20059955), (MGI:72077|PMID:7743923)
(PMID:10775504)		 UniProt
UniProtKB		 PMID:7743923 PMID:10775504 PMID:19828133 PMID:20059955 MGI:4418577 MGI:5294531 MGI:72077 NCBI chr 8:138,476,902...138,482,185
Ensembl chr 8:138,478,458...138,480,459 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:13,988,059...13,993,780
Ensembl chr 2:13,988,024...13,993,746 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 enables ISO (PMID:11912130), (PMID:15737616), (PMID:16707493) ARUK-UCL PMID:11912130 PMID:15737616 PMID:16707493 NCBI chr 8:45,043,381...45,047,054
Ensembl chr 8:45,043,393...45,046,978 		JBrowse link
G SPZ1 spermatogenic leucine zipper 1 enables ISO (PMID:30541061) MGI PMID:30541061 NCBI chr 4:74,501,194...74,503,699
Ensembl chr 4:74,502,216...74,503,364 		JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 enables ISO (PMID:15358760) BHF-UCL PMID:15358760 NCBI chr19:24,364,725...24,439,851
Ensembl chr19:24,364,911...24,440,014 		JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor enables IEA Ensembl GO_REF:0000107 NCBI chr20:85,681,247...85,697,887
Ensembl chr20:85,688,155...85,694,829 		JBrowse link
G TCF12 transcription factor 12 enables IEA Ensembl GO_REF:0000107 NCBI chr26:26,219,881...26,585,452
Ensembl chr26:26,218,496...26,583,684 		JBrowse link
G TCF15 transcription factor 15 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:55,909,945...55,916,186
Ensembl chr 2:55,910,030...55,915,600 		JBrowse link
G TCF21 transcription factor 21 enables IEA Ensembl GO_REF:0000107 NCBI chr13:39,607,179...39,610,336
Ensembl chr13:39,607,182...39,610,388 		JBrowse link
G TCF3 transcription factor 3 contributes_to
enables		 ISO (MGI:4362015|PMID:11812799)
(PMID:11812799)
(PMID:15226298), (PMID:18214987), (PMID:30541061)
(MGI:3789797|PMID:18214987), (MGI:6508495|PMID:15226298), (PMID:30541061)
(PMID:10652346), (PMID:7933101)
(MGI:1203942|PMID:9545521)
(PMID:15044608)
PMID:19828133
(PMID:10775504)		 BHF-UCL
UniProt
UniProtKB		 PMID:7933101 PMID:9545521 PMID:10652346 PMID:10775504 PMID:11812799 More... MGI:1203942 MGI:3789797 MGI:4362015 MGI:6508495 RGD:8553796 NCBI chr 6:1,393,147...1,440,515
Ensembl chr 6:1,393,107...1,440,479 		JBrowse link
G TCF4 transcription factor 4 enables ISO (MGI:3789797|PMID:18214987), (MGI:85411|PMID:8978694)
(PMID:18214987), (PMID:8978694)		 BHF-UCL
UniProt		 PMID:8978694 PMID:18214987 MGI:3789797 MGI:85411 NCBI chr18:24,116,595...24,483,037
Ensembl chr18:24,116,547...24,478,228 		JBrowse link
G TFAP4 transcription factor AP-4 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:3,931,288...3,960,039
Ensembl chr 5:3,932,149...3,954,486 		JBrowse link
G TFE3 transcription factor binding to IGHM enhancer 3 enables ISO (MGI:7510300|PMID:20713358) UniProt PMID:20713358 MGI:7510300 NCBI chr  X:46,141,377...46,155,445
Ensembl chr  X:46,140,543...46,155,372 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:30,674,893...30,862,682
Ensembl chr 9:30,674,578...30,863,250 		JBrowse link
estrogen response element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AR androgen receptor enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:57,380,587...57,553,613
Ensembl chr  X:57,380,611...57,546,776 		JBrowse link
G ESR1 estrogen receptor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:79,153,418...79,554,552
Ensembl chr13:79,270,265...79,554,549 		JBrowse link
G ESR2 estrogen receptor 2 enables ISO
IEA		 RGD
TreeGrafter		 PMID:9600083 GO_REF:0000118 RGD:728646 NCBI chr24:41,426,333...41,513,802
Ensembl chr24:41,447,224...41,512,486 		JBrowse link
G ESRRA estrogen related receptor alpha enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,918,741...9,929,481
Ensembl chr 1:9,917,436...9,929,450 		JBrowse link
G ESRRB estrogen related receptor beta enables IEA TreeGrafter GO_REF:0000118 NCBI chr24:53,630,998...53,762,098 JBrowse link
G ESRRG estrogen related receptor gamma enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:12,495,234...13,090,739
Ensembl chr25:12,866,321...13,090,733 		JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr23:45,904,926...46,031,804
Ensembl chr23:45,904,873...46,031,125 		JBrowse link
G PGR progesterone receptor enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:92,420,970...92,519,128
Ensembl chr 1:92,430,453...92,517,296 		JBrowse link
G TRIM24 tripartite motif containing 24 enables ISO (PMID:21164480) UniProt PMID:21164480 NCBI chr21:107,166,180...107,291,897
Ensembl chr21:107,166,395...107,295,736 		JBrowse link
intronic transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chr15:81,997,659...82,022,059
Ensembl chr15:81,998,545...82,009,946 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 enables ISO (MGI:4867118|PMID:20978075) UniProt PMID:20978075 MGI:4867118 NCBI chr 8:96,340,459...96,526,366
Ensembl chr 8:96,342,189...96,526,363 		JBrowse link
G NKX2-1 NK2 homeobox 1 enables ISO (PMID:23143308)
(PMID:22955271)
(MGI:5613464|PMID:22955271)		 MGI
UniProt		 PMID:22955271 PMID:23143308 MGI:5613464 NCBI chr24:13,274,118...13,317,533
Ensembl chr24:13,310,846...13,317,056 		JBrowse link
G THRA thyroid hormone receptor alpha ISO RGD PMID:20368265 RGD:2324624 NCBI chr16:66,087,071...66,118,137 JBrowse link
mitochondrial promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LONP1 lon peptidase 1, mitochondrial NOT|enables ISO (PMID:9485316)
(PMID:12657466)		 UniProt
MGI		 PMID:9485316 PMID:12657466 NCBI chr 6:5,348,968...5,371,521
Ensembl chr 6:5,346,426...5,371,507 		JBrowse link
G POLRMT RNA polymerase mitochondrial enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:358,865...377,007
Ensembl chr 6:358,917...377,089 		JBrowse link
G TFAM transcription factor A, mitochondrial enables IEA Ensembl GO_REF:0000107 NCBI chr 9:72,900,665...72,914,634
Ensembl chr 9:72,904,637...72,914,397 		JBrowse link
N-box binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 enables ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:22302822 GO_REF:0000107 GO_REF:0000118 RGD:9685391 NCBI chr15:88,220,093...88,222,563
Ensembl chr15:88,220,083...88,223,243 		JBrowse link
purine-rich negative regulatory element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELK3 ETS transcription factor ELK3 enables ISO (PMID:12933792) HGNC-UCL PMID:12933792 NCBI chr11:91,556,276...91,633,236
Ensembl chr11:91,556,333...91,633,592 		JBrowse link
G PURA purine rich element binding protein A enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:42,757,963...42,767,393
Ensembl chr23:42,764,263...42,765,231 		JBrowse link
G PURB purine rich element binding protein B enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr21:13,796,087...13,805,162
Ensembl chr21:13,796,118...13,797,056 		JBrowse link
G PURG purine rich element binding protein G enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:29,109,478...29,149,443
Ensembl chr 8:29,109,552...29,149,066 		JBrowse link
retinoic acid-responsive element binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYT1L myelin transcription factor 1 like enables ISO PMID:10606515 RGD
CAFA		 PMID:8631881 PMID:10606515 RGD:12793025 RGD:633486 NCBI chr14:105,679,736...105,891,013
Ensembl chr14:105,757,023...105,891,025 		JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 ISO RGD PMID:7797489 RGD:633499 NCBI chr 4:87,463,514...87,475,900
Ensembl chr 4:87,466,249...87,475,112 		JBrowse link
G RARA retinoic acid receptor alpha enables ISO (PMID:19917671) UniProt PMID:19917671 NCBI chr16:65,817,849...65,866,862
Ensembl chr16:65,817,757...65,866,878 		JBrowse link
G RXRA retinoid X receptor alpha enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:3,704,129...3,814,707
Ensembl chr12:3,699,923...3,814,678 		JBrowse link
G RXRB retinoid X receptor beta enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:38,874,467...38,881,527
Ensembl chr17:38,874,681...38,881,653 		JBrowse link
G RXRG retinoid X receptor gamma enables IEA TreeGrafter GO_REF:0000118 NCBI chr25:63,444,128...63,490,594
Ensembl chr25:63,443,944...63,490,635 		JBrowse link
G ZNF536 zinc finger protein 536 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:25,275,439...25,759,834
Ensembl chr 6:25,494,973...25,599,359 		JBrowse link
RNA polymerase I cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIH1D1 PIH1 domain containing 1 NOT|enables ISO (PMID:22368283) UniProt PMID:22368283 NCBI chr 6:42,627,125...42,633,467
Ensembl chr 6:42,627,097...42,632,932 		JBrowse link
G UBTF upstream binding transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr16:62,168,288...62,184,902
Ensembl chr16:62,171,666...62,182,320 		JBrowse link
RNA polymerase I core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A contributes_to ISO (PMID:22368283) GO_Central PMID:22368283 NCBI chr11:52,545,183...52,585,822
Ensembl chr11:52,547,789...52,566,799 		JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor enables ISO (PMID:22368283) UniProt PMID:22368283 NCBI chr 5:14,235,368...14,271,790
Ensembl chr 5:14,235,414...14,272,020 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 contributes_to ISO (PMID:22368283) GO_Central PMID:22368283 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 contributes_to ISO (PMID:22368283) GO_Central PMID:22368283 NCBI chr19:6,902,985...6,945,111
Ensembl chr19:6,902,951...6,944,784 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:97,704,251...97,787,738
Ensembl chr14:97,704,187...97,787,639 		JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:69,587,592...69,596,312
Ensembl chr 5:69,587,769...69,593,814 		JBrowse link
G TBP TATA-box binding protein enables ISO (PMID:11250903) UniProt PMID:11250903 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G UBTF upstream binding transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr16:62,168,288...62,184,902
Ensembl chr16:62,171,666...62,182,320 		JBrowse link
RNA polymerase I transcription regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPA CCAAT enhancer binding protein alpha enables ISO (PMID:20075868) UniProt PMID:20075868 NCBI chr 6:28,342,506...28,345,759
Ensembl chr 6:28,343,907...28,344,977 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 enables ISO (PMID:22053081) MGI PMID:22053081 NCBI chr20:96,929,985...96,971,074
Ensembl chr20:96,934,659...96,971,014 		JBrowse link
G ANHX anomalous homeobox enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:128,514,478...128,531,580
Ensembl chr11:128,515,021...128,530,891 		JBrowse link
G APP amyloid beta precursor protein enables IEA Ensembl GO_REF:0000107 NCBI chr 2:66,037,224...66,320,860
Ensembl chr 2:66,037,261...66,321,306 		JBrowse link
G AR androgen receptor enables ISO (PMID:16728402), (PMID:25802280) NTNU_SB PMID:16728402 PMID:25802280 NCBI chr  X:57,380,587...57,553,613
Ensembl chr  X:57,380,611...57,546,776 		JBrowse link
G ARNT aryl hydrocarbon receptor nuclear translocator enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118
G ARNT2 aryl hydrocarbon receptor nuclear translocator 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:2,790,059...2,990,760
Ensembl chr26:2,794,372...2,990,814 		JBrowse link
G ARX aristaless related homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr  X:23,499,791...23,518,333
Ensembl chr  X:23,500,454...23,511,524 		JBrowse link
G ASCL1 achaete-scute family bHLH transcription factor 1 enables ISO (PMID:11736660) NTNU_SB PMID:11736660 NCBI chr11:98,182,213...98,185,057
Ensembl chr11:98,182,787...98,183,506 		JBrowse link
G ASCL2 achaete-scute family bHLH transcription factor 2 enables ISO (PMID:14561729) NTNU_SB PMID:14561729 NCBI chr 1:2,075,629...2,080,462
Ensembl chr 1:2,076,851...2,077,432 		JBrowse link
G ASCL5 achaete-scute family bHLH transcription factor 5 enables ISO (MGI:6359291|PMID:30426815)
(PMID:30426815)		 UniProt PMID:30426815 MGI:6359291 NCBI chr25:28,274,562...28,287,783
Ensembl chr25:28,286,370...28,286,987 		JBrowse link
G ATF1 activating transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:46,992,068...47,049,142
Ensembl chr11:47,003,621...47,049,381 		JBrowse link
G ATF2 activating transcription factor 2 enables ISO (PMID:19861239)
(PMID:16405968)		 BHF-UCL
MGI		 PMID:16405968 PMID:19861239 NCBI chr10:60,644,623...60,734,465
Ensembl chr10:60,644,635...60,734,475 		JBrowse link
G ATF3 activating transcription factor 3 enables ISO (MGI:3624470|PMID:16644691)
(PMID:16644691)
PMID:18308734		 NTNU_SB
ARUK-UCL		 PMID:16644691 PMID:18308734 MGI:3624470 RGD:39458028 NCBI chr25:16,910,312...16,922,598 JBrowse link
G ATF3 activating transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr25:16,911,537...16,922,213 JBrowse link
G ATF4 activating transcription factor 4 enables
contributes_to		 IEA
ISO		 (PMID:27812542) Ensembl
MGI		 PMID:27812542 GO_REF:0000107 NCBI chr19:22,092,046...22,094,184
Ensembl chr19:22,091,667...22,095,230 		JBrowse link
G ATF6 activating transcription factor 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:2,112,819...2,304,063
Ensembl chr20:2,117,982...2,304,027 		JBrowse link
G ATF6B activating transcription factor 6 beta contributes_to
enables		 ISO
IEA		 (PMID:11256944) NTNU_SB
TreeGrafter		 PMID:11256944 GO_REF:0000118 NCBI chr17:39,901,226...39,913,702
Ensembl chr17:39,901,226...39,914,142 		JBrowse link
G ATOH1 atonal bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:42,098,057...42,104,910
Ensembl chr 7:42,100,996...42,102,060 		JBrowse link
G BACH1 BTB domain and CNC homolog 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:62,674,834...63,028,825
Ensembl chr 2:62,877,986...62,925,465 		JBrowse link
G BACH2 BTB domain and CNC homolog 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:14,681,323...15,049,690
Ensembl chr13:14,687,188...14,763,706 		JBrowse link
G BATF basic leucine zipper ATF-like transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr24:52,761,569...52,785,999
Ensembl chr24:52,761,651...52,785,978 		JBrowse link
G BATF2 basic leucine zipper ATF-like transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,220,087...9,248,964
Ensembl chr 1:9,239,938...9,248,971 		JBrowse link
G BATF3 basic leucine zipper ATF-like transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:16,832,733...16,848,835
Ensembl chr25:16,834,957...16,848,510 		JBrowse link
G BCL11A BCL11 transcription factor A enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:46,453,102...46,553,802 JBrowse link
G BCL11B BCL11 transcription factor B enables IEA TreeGrafter GO_REF:0000118 NCBI chr24:77,122,591...77,222,562
Ensembl chr24:77,122,689...77,221,454 		JBrowse link
G BCL6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chr15:81,997,659...82,022,059
Ensembl chr15:81,998,545...82,009,946 		JBrowse link
G BCL6B BCL6B transcription repressor enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:6,380,406...6,388,931
Ensembl chr16:6,382,384...6,390,716 		JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:41,049,673...41,055,365
Ensembl chr22:41,049,712...41,055,360 		JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:25,872,139...25,879,985
Ensembl chr11:25,874,108...25,876,826 		JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:51,430,670...51,540,344
Ensembl chr 1:51,431,180...51,462,674 		JBrowse link
G BMAL2 basic helix-loop-helix ARNT like 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:27,067,523...27,141,740
Ensembl chr11:27,067,604...27,136,466 		JBrowse link
G BPTF bromodomain PHD finger transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:53,478,706...53,634,617
Ensembl chr16:53,478,464...53,634,183 		JBrowse link
G BSX brain specific homeobox enables ISO (MGI:3713592|PMID:17353277)
(PMID:17353277)		 NTNU_SB PMID:17353277 MGI:3713592 NCBI chr 1:114,366,225...114,373,943
Ensembl chr 1:114,368,217...114,372,282 		JBrowse link
G CALCOCO1 calcium binding and coiled-coil domain 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:49,816,546...49,833,655
Ensembl chr11:49,814,007...49,833,632 		JBrowse link
G CARF calcium responsive transcription factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:88,650,436...88,735,369
Ensembl chr10:88,651,152...88,735,384 		JBrowse link
G CC2D1A coiled-coil and C2 domain containing 1A enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:12,567,165...12,589,680
Ensembl chr 6:12,567,237...12,589,815 		JBrowse link
G CC2D1B coiled-coil and C2 domain containing 1B enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:80,577,385...80,591,018
Ensembl chr20:80,577,725...80,590,046 		JBrowse link
G CCAR1 cell division cycle and apoptosis regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:62,616,825...62,689,540
Ensembl chr 9:62,616,792...62,688,247 		JBrowse link
G CDK9 cyclin dependent kinase 9 enables ISO (PMID:21245044) MGI PMID:21245044 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G CDX1 caudal type homeobox 1 enables ISO (PMID:15774940) NTNU_SB PMID:15774940 NCBI chr23:52,763,731...52,795,005
Ensembl chr23:52,776,761...52,795,387 		JBrowse link
G CDX2 caudal type homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:7,080,142...7,088,010
Ensembl chr 3:7,078,503...7,087,285 		JBrowse link
G CDX4 caudal type homeobox 4 enables ISO (PMID:21471217) NTNU_SB PMID:21471217 NCBI chr  X:63,013,317...63,022,748
Ensembl chr  X:63,014,049...63,021,422 		JBrowse link
G CEBPA CCAAT enhancer binding protein alpha enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:28,342,506...28,345,759
Ensembl chr 6:28,343,907...28,344,977 		JBrowse link
G CEBPB CCAAT enhancer binding protein beta enables
contributes_to		 IEA
ISO		 (PMID:27812542) Ensembl
TreeGrafter
MGI		 PMID:27812542 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:13,780,538...13,782,639
Ensembl chr 2:13,781,160...13,782,194 		JBrowse link
G CEBPD CCAAT enhancer binding protein delta enables ISO (MGI:5572879|PMID:15833715)
PMID:8572170		 NTNU_SB PMID:8572170 PMID:15833715 MGI:5572879 RGD:8661634 NCBI chr 8:43,873,075...43,874,375 JBrowse link
G CEBPE CCAAT enhancer binding protein epsilon enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr29:23,485,966...23,488,615
Ensembl chr29:23,486,148...23,487,755 		JBrowse link
G CEBPG CCAAT enhancer binding protein gamma enables ISO (MGI:5572879|PMID:15833715)
(PMID:15833715)		 NTNU_SB PMID:15833715 MGI:5572879 NCBI chr 6:28,415,448...28,424,463 JBrowse link
G CEBPG CCAAT enhancer binding protein gamma enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 6:28,421,000...28,421,452 JBrowse link
G CHD2 chromodomain helicase DNA binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr29:11,436,170...11,579,468
Ensembl chr29:11,450,799...11,579,594 		JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 enables ISO (PMID:23319608) MGI PMID:23319608 NCBI chr 8:56,654,939...56,782,803
Ensembl chr 8:56,657,826...56,785,804 		JBrowse link
G CIART circadian associated repressor of transcription enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118
G CLOCK clock circadian regulator enables IEA Ensembl GO_REF:0000107 NCBI chr 7:13,015,198...13,134,741
Ensembl chr 7:13,051,454...13,127,240 		JBrowse link
G CREB1 cAMP responsive element binding protein 1 enables ISO (PMID:19861239), (PMID:9065434) NTNU_SB PMID:9065434 PMID:19861239 NCBI chr10:93,316,774...93,395,187
Ensembl chr10:93,316,840...93,388,832 		JBrowse link
G CREB3 cAMP responsive element binding protein 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:44,865,409...44,870,074
Ensembl chr12:44,865,682...44,869,621 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 enables ISO (MGI:5572871|PMID:17178827)
(PMID:17178827)		 NTNU_SB PMID:17178827 MGI:5572871 NCBI chr21:106,572,893...106,705,080
Ensembl chr21:106,578,422...106,705,089 		JBrowse link
G CREB3L3 cAMP responsive element binding protein 3 like 3 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:3,905,728...3,921,457 JBrowse link
G CREB3L4 cAMP responsive element binding protein 3 like 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:9,839,137...9,848,413
Ensembl chr20:9,838,085...9,845,287 		JBrowse link
G CREM cAMP responsive element modulator enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:34,418,956...34,503,774
Ensembl chr 9:34,418,947...34,506,930 		JBrowse link
G CRX cone-rod homeobox enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:41,125,912...41,133,478
Ensembl chr 6:41,126,125...41,132,951 		JBrowse link
G CTCF CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chr 5:59,806,753...59,889,534
Ensembl chr 5:59,806,551...59,880,049 		JBrowse link
G CTCFL CCCTC-binding factor like enables ISO (PMID:16140944) NTNU_SB PMID:16140944 NCBI chr 2:6,592,924...6,623,787 JBrowse link
G CUX1 cut like homeobox 1 enables ISO (PMID:18836447) MGI PMID:18836447 NCBI chr28:10,901,529...11,370,834
Ensembl chr28:10,937,512...11,370,702 		JBrowse link
G CUX2 cut like homeobox 2 enables ISO (MGI:3531237|PMID:15656993)
(PMID:15656993)		 NTNU_SB PMID:15656993 MGI:3531237 NCBI chr11:106,462,877...106,602,847 JBrowse link
G DACH1 dachshund family transcription factor 1 enables ISO (PMID:20956529) BHF-UCL PMID:20956529 NCBI chr 3:50,591,136...51,020,042 JBrowse link
G DACH1 dachshund family transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr 3:50,590,271...50,836,590 JBrowse link
G DACH2 dachshund family transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:75,445,700...75,575,391 JBrowse link
G DBP D-box binding PAR bZIP transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:41,882,042...41,889,311
Ensembl chr 6:41,882,317...41,889,200 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:53,424,693...53,429,094
Ensembl chr11:53,424,868...53,425,576 		JBrowse link
G DDN dendrin enables ISO PMID:21911934 MGI PMID:21911934 RGD:8554331 NCBI chr11:45,236,826...45,239,540
Ensembl chr11:45,236,969...45,239,519 		JBrowse link
G DHX36 DEAH-box helicase 36 enables ISO (MGI:6201778|PMID:25611385)
(PMID:25611385)
(PMID:21586581), (PMID:21993297)		 UniProt PMID:21586581 PMID:21993297 PMID:25611385 MGI:6201778 NCBI chr15:36,387,242...36,438,133
Ensembl chr15:36,387,228...36,437,606 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr25:46,485,602...46,534,046
Ensembl chr25:46,485,427...46,518,406 		JBrowse link
G DLX1 distal-less homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:57,586,452...57,599,071
Ensembl chr10:57,590,838...57,595,266 		JBrowse link
G DLX2 distal-less homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:57,604,989...57,609,487
Ensembl chr10:57,606,084...57,608,079 		JBrowse link
G DLX3 distal-less homeobox 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:43,339,733...43,345,599
Ensembl chr16:43,340,576...43,344,095 		JBrowse link
G DLX4 distal-less homeobox 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:43,360,941...43,368,329
Ensembl chr16:43,361,955...43,366,474 		JBrowse link
G DLX5 distal-less homeobox 5 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr21:52,036,401...52,040,903 JBrowse link
G DLX6 distal-less homeobox 6 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr21:52,050,206...52,054,985 JBrowse link
G DMRT1 doublesex and mab-3 related transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr12:78,551,281...78,678,284 JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:78,528,709...78,543,509
Ensembl chr12:78,529,443...78,543,419 		JBrowse link
G DMRTA1 DMRT like family A1 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr12:57,446,272...57,451,365 JBrowse link
G DMRTA2 DMRT like family A2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:82,489,938...82,496,302
Ensembl chr20:82,492,299...82,495,173 		JBrowse link
G DMRTB1 DMRT like family B with proline rich C-terminal 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:79,463,104...79,472,483
Ensembl chr20:79,463,931...79,471,408 		JBrowse link
G DMRTC2 DMRT like family C2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:36,052,497...36,060,277
Ensembl chr 6:36,055,088...36,059,830 		JBrowse link
G DMTF1 cyclin D binding myb like transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:61,744,438...61,789,032
Ensembl chr21:61,745,619...61,787,044 		JBrowse link
G DNMT3A DNA methyltransferase 3 alpha enables ISO (PMID:19786833), (PMID:23042785) BHF-UCL PMID:19786833 PMID:23042785 NCBI chr14:82,313,414...82,427,170
Ensembl chr14:82,402,826...82,420,819 		JBrowse link
G DPRX divergent-paired related homeobox enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:46,352,445...46,357,935 JBrowse link
G DUX4 double homeobox 4 enables ISO (PMID:17984056) NTNU_SB PMID:17984056
G E2F1 E2F transcription factor 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 2:37,968,541...37,980,461
Ensembl chr 2:37,968,556...37,980,326 		JBrowse link
G E2F2 E2F transcription factor 2 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:109,146,567...109,171,540
Ensembl chr20:109,146,587...109,168,093 		JBrowse link
G E2F4 E2F transcription factor 4 enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:60,257,891...60,270,018
Ensembl chr 5:60,258,098...60,264,584 		JBrowse link
G E2F5 E2F transcription factor 5 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:80,542,390...80,587,888
Ensembl chr 8:80,542,580...80,587,226 		JBrowse link
G E2F6 E2F transcription factor 6 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr14:96,152,374...96,172,783
Ensembl chr14:96,152,649...96,173,708 		JBrowse link
G E2F7 E2F transcription factor 7 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:72,598,220...72,642,366
Ensembl chr11:72,599,353...72,641,420 		JBrowse link
G E2F8 E2F transcription factor 8 enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:45,751,937...45,772,698
Ensembl chr 1:45,756,301...45,772,632 		JBrowse link
G EBF1 EBF transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr23:61,097,268...61,502,784
Ensembl chr23:61,109,331...61,243,631 		JBrowse link
G EBF2 EBF transcription factor 2 enables ISO (MGI:2384470|PMID:12139918) NTNU_SB PMID:12139918 MGI:2384470 NCBI chr 8:23,949,496...24,160,949 JBrowse link
G EBF2 EBF transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr 8:23,965,850...24,150,453 JBrowse link
G EBF3 EBF transcription factor 3 enables ISO (MGI:2384470|PMID:12139918)
(PMID:12139918)		 NTNU_SB PMID:12139918 MGI:2384470 NCBI chr 9:122,443,492...122,572,089 JBrowse link
G EBF3 EBF transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 9:122,443,514...122,571,303 JBrowse link
G EBF4 EBF family member 4 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:53,786,397...53,850,935
Ensembl chr 2:53,794,161...53,838,668 		JBrowse link
G EEF1D eukaryotic translation elongation factor 1 delta enables ISO (PMID:21597468) UniProt PMID:21597468 NCBI chr 8:137,800,115...137,818,264
Ensembl chr 8:137,799,428...137,813,120 		JBrowse link
G EGR1 early growth response 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:41,139,636...41,143,598
Ensembl chr23:41,140,065...41,142,374 		JBrowse link
G EGR2 early growth response 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:68,472,640...68,479,612
Ensembl chr 9:68,475,102...68,479,595 		JBrowse link
G EGR3 early growth response 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:20,767,219...20,772,838
Ensembl chr 8:20,767,224...20,772,682 		JBrowse link
G EGR4 early growth response 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:33,879,707...33,882,669
Ensembl chr14:33,879,904...33,882,663 		JBrowse link
G EHF ETS homologous factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:30,591,880...30,651,077
Ensembl chr 1:30,591,273...30,622,803 		JBrowse link
G ELF1 E74 like ETS transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:19,218,161...19,303,116
Ensembl chr 3:19,217,771...19,303,113 		JBrowse link
G ELF3 E74 like ETS transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chr25:27,390,707...27,398,312
Ensembl chr25:27,390,809...27,397,441 		JBrowse link
G ELF4 E74 like ETS transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:105,321,440...105,366,489
Ensembl chr  X:105,320,952...105,337,560 		JBrowse link
G ELK1 ETS transcription factor ELK1 enables ISO (PMID:12750007) NTNU_SB PMID:12750007
G ELK3 ETS transcription factor ELK3 enables ISO (PMID:12788937) NTNU_SB PMID:12788937 NCBI chr11:91,556,276...91,633,236
Ensembl chr11:91,556,333...91,633,592 		JBrowse link
G ELK4 ETS transcription factor ELK4 enables IEA Ensembl GO_REF:0000107 NCBI chr25:23,714,591...23,731,330
Ensembl chr25:23,714,708...23,729,925 		JBrowse link
G EMX1 empty spiracles homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:34,232,425...34,250,807
Ensembl chr14:34,232,819...34,249,253 		JBrowse link
G EMX2 empty spiracles homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:110,347,043...110,353,647
Ensembl chr 9:110,347,379...110,353,643 		JBrowse link
G EN1 engrailed homeobox 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr10:11,475,221...11,479,475 JBrowse link
G EN2 engrailed homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:123,590,840...123,596,381 JBrowse link
G EOMES eomesodermin enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr15:72,257,615...72,263,264 JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:20702579 RGD:5128544 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G EPAS1 endothelial PAS domain protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:60,823,110...60,912,804
Ensembl chr14:60,822,815...60,912,785 		JBrowse link
G ERG ETS transcription factor ERG enables IEA Ensembl GO_REF:0000107 NCBI chr 2:82,327,088...82,611,341
Ensembl chr 2:82,326,767...82,447,228 		JBrowse link
G ESR1 estrogen receptor 1 enables ISO (PMID:12047722), (PMID:15345745) UniProt PMID:12047722 PMID:15345745 NCBI chr13:79,153,418...79,554,552
Ensembl chr13:79,270,265...79,554,549 		JBrowse link
G ESR2 estrogen receptor 2 enables ISO PMID:12047722
(PMID:15345745)		 NTNU_SB
UniProt		 PMID:12047722 PMID:15345745 RGD:8661629 NCBI chr24:41,426,333...41,513,802
Ensembl chr24:41,447,224...41,512,486 		JBrowse link
G ESRRA estrogen related receptor alpha enables ISO (PMID:18234909) MGI PMID:18234909 NCBI chr 1:9,918,741...9,929,481
Ensembl chr 1:9,917,436...9,929,450 		JBrowse link
G ESRRB estrogen related receptor beta enables ISO (MGI:5823092|PMID:27723719)
(PMID:27723719)
(PMID:18662995)
(MGI:3813404|PMID:18662995)		 UniProt
BHF-UCL		 PMID:18662995 PMID:27723719 MGI:3813404 MGI:5823092 NCBI chr24:53,630,998...53,762,098 JBrowse link
G ETS1 ETS proto-oncogene 1, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:119,588,476...119,736,623
Ensembl chr 1:119,588,448...119,652,299 		JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 2:82,751,196...82,770,051
Ensembl chr 2:82,757,930...82,770,165 		JBrowse link
G ETV1 ETS variant transcription factor 1 enables ISO (PMID:12750007) NTNU_SB PMID:12750007 NCBI chr21:44,090,290...44,187,741
Ensembl chr21:44,090,482...44,185,142 		JBrowse link
G ETV2 ETS variant transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:30,552,780...30,556,374
Ensembl chr 6:30,553,931...30,556,355 		JBrowse link
G ETV4 ETS variant transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr16:62,864,628...62,883,574
Ensembl chr16:62,865,275...62,883,563 		JBrowse link
G ETV6 ETS variant transcription factor 6 enables IEA Ensembl GO_REF:0000107 NCBI chr11:11,567,522...11,812,292
Ensembl chr11:11,567,632...11,811,716 		JBrowse link
G EVX1 even-skipped homeobox 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:31,118,911...31,130,186
Ensembl chr21:31,123,397...31,126,792 		JBrowse link
G EVX2 even-skipped homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:61,650,763...61,659,724
Ensembl chr10:61,654,829...61,658,494 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr21:117,380,518...117,515,224
Ensembl chr21:117,380,361...117,421,573 		JBrowse link
G FEV FEV transcription factor, ETS family member enables ISO PMID:9468386 NTNU_SB PMID:9468386 RGD:633697 NCBI chr10:104,879,790...104,886,722
Ensembl chr10:104,880,347...104,883,916 		JBrowse link
G FEZF1 FEZ family zinc finger 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:91,099,660...91,110,242
Ensembl chr21:91,100,346...91,102,767 		JBrowse link
G FEZF2 FEZ family zinc finger 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:23,442,699...23,453,026
Ensembl chr22:23,443,114...23,445,908 		JBrowse link
G FIGLA folliculogenesis specific bHLH transcription factor enables ISO (MGI:1326792|PMID:9362457) NTNU_SB PMID:9362457 MGI:1326792 NCBI chr14:36,320,167...36,334,099
Ensembl chr14:36,321,125...36,334,042 		JBrowse link
G FLI1 Fli-1 proto-oncogene, ETS transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:119,817,987...119,945,378
Ensembl chr 1:119,827,222...119,946,662 		JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:52,497,465...52,501,161
Ensembl chr24:52,497,521...52,501,514 		JBrowse link
G FOSB FosB proto-oncogene, AP-1 transcription factor subunit enables ISO (MGI:5605958|PMID:12525489) NTNU_SB PMID:12525489 MGI:5605958 NCBI chr 6:38,916,039...38,924,129 JBrowse link
G FOSL1 FOS like 1, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:8,356,263...8,365,606
Ensembl chr 1:8,356,836...8,364,918 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:79,201,128...79,222,363
Ensembl chr14:79,201,649...79,222,373 		JBrowse link
G FOXA1 forkhead box A1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:14,397,759...14,403,078
Ensembl chr24:14,396,702...14,403,094 		JBrowse link
G FOXA2 forkhead box A2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G FOXA3 forkhead box A3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:39,309,439...39,320,102
Ensembl chr 6:39,310,108...39,320,095 		JBrowse link
G FOXB1 forkhead box B1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr26:23,502,048...23,505,390
Ensembl chr26:23,503,545...23,504,522 		JBrowse link
G FOXC1 forkhead box C1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476 		JBrowse link
G FOXC2 forkhead box C2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:71,951,980...71,955,021
Ensembl chr 5:71,952,632...71,954,134 		JBrowse link
G FOXD1 forkhead box D1 enables ISO (MGI:2675756|PMID:13678594) NTNU_SB PMID:13678594 MGI:2675756 NCBI chr 4:67,790,423...67,796,901 JBrowse link
G FOXD2 forkhead box D2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:85,480,546...85,485,209
Ensembl chr20:85,481,622...85,483,103 		JBrowse link
G FOXD3 forkhead box D3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:69,743,872...69,746,551
Ensembl chr20:69,744,503...69,745,939 		JBrowse link
G FOXE1 forkhead box E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:41,555,901...41,559,914
Ensembl chr12:41,557,568...41,558,686 		JBrowse link
G FOXE3 forkhead box E3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:85,502,938...85,505,158
Ensembl chr20:85,504,126...85,505,076 		JBrowse link
G FOXF1 forkhead box F1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
G FOXF2 forkhead box F2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:70,744,989...70,750,860
Ensembl chr17:70,745,011...70,750,652 		JBrowse link
G FOXI1 forkhead box I1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:72,319,377...72,324,442
Ensembl chr23:72,321,483...72,325,532 		JBrowse link
G FOXI2 forkhead box I2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:120,355,102...120,359,663
Ensembl chr 9:120,355,174...120,356,864 		JBrowse link
G FOXI3 forkhead box I3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:18,310,904...18,317,115
Ensembl chr14:18,312,661...18,317,033 		JBrowse link
G FOXJ1 forkhead box J1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:45,536,973...45,544,331
Ensembl chr16:45,539,510...45,544,299 		JBrowse link
G FOXJ2 forkhead box J2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:8,101,982...8,125,764
Ensembl chr11:8,109,340...8,125,743 		JBrowse link
G FOXJ3 forkhead box J3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:90,597,016...90,746,777
Ensembl chr20:90,621,037...90,746,784 		JBrowse link
G FOXK1 forkhead box K1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr28:16,875,747...16,962,813
Ensembl chr28:16,880,884...16,962,734 		JBrowse link
G FOXK2 forkhead box K2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:74,426,111...74,506,453
Ensembl chr16:74,426,105...74,503,373 		JBrowse link
G FOXL1 forkhead box L1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:71,960,154...71,968,629
Ensembl chr 5:71,963,965...71,965,002 		JBrowse link
G FOXL2 forkhead box L2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr15:51,595,806...51,598,124
Ensembl chr15:51,596,218...51,597,348 		JBrowse link
G FOXO1 forkhead box O1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:18,916,849...19,027,776
Ensembl chr 3:18,920,651...19,027,707 		JBrowse link
G FOXO3 forkhead box O3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:65,175,764...65,303,107
Ensembl chr13:65,195,376...65,301,725 		JBrowse link
G FOXO4 forkhead box O4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:60,893,711...60,901,134
Ensembl chr  X:60,893,526...60,902,844 		JBrowse link
G FOXO6 forkhead box O6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:91,527,355...91,549,530 JBrowse link
G FOXP1 forkhead box P1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:31,907,941...32,538,294
Ensembl chr22:31,912,460...32,154,502 		JBrowse link
G FOXP2 forkhead box P2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:82,799,147...83,392,568
Ensembl chr21:83,129,308...83,389,483 		JBrowse link
G FOXP3 forkhead box P3 enables ISO (MGI:3710039|PMID:17377532) UniProt PMID:17377532 MGI:3710039 NCBI chr  X:46,349,890...46,365,133 JBrowse link
G FOXP3 forkhead box P3 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:46,346,754...46,356,928 JBrowse link
G FOXP4 forkhead box P4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:30,554,702...30,608,845
Ensembl chr17:30,554,055...30,589,849 		JBrowse link
G FOXQ1 forkhead box Q1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:70,824,812...70,827,737
Ensembl chr17:70,826,264...70,827,478 		JBrowse link
G FOXS1 forkhead box S1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:36,232,873...36,234,636
Ensembl chr 2:36,233,126...36,234,124 		JBrowse link
G FUBP1 far upstream element binding protein 1 enables ISO (PMID:18836447) MGI PMID:18836447 NCBI chr20:55,194,681...55,233,666
Ensembl chr20:55,194,743...55,230,277 		JBrowse link
G GABPA GA binding protein transcription factor subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 2:66,502,250...66,539,436
Ensembl chr 2:66,505,401...66,539,791 		JBrowse link
G GATA1 GATA binding protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:45,912,638...45,920,415
Ensembl chr  X:45,917,231...45,920,268 		JBrowse link
G GATA2 GATA binding protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:52,549,112...52,562,911
Ensembl chr22:52,555,738...52,562,909 		JBrowse link
G GATA3 GATA binding protein 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G GATA4 GATA binding protein 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GATA5 GATA binding protein 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,756,911...1,769,452
Ensembl chr 2:1,757,420...1,768,143 		JBrowse link
G GATA6 GATA binding protein 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr18:58,312,328...58,345,472
Ensembl chr18:58,311,482...58,343,746 		JBrowse link
G GCM1 glial cells missing transcription factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:19,421,054...19,444,311
Ensembl chr17:19,424,896...19,443,079 		JBrowse link
G GCM2 glial cells missing transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:61,256,063...61,264,688
Ensembl chr17:61,256,611...61,264,390 		JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:40,771,238...40,786,008
Ensembl chr20:40,776,816...40,783,717 		JBrowse link
G GLI1 GLI family zinc finger 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:53,371,929...53,384,339
Ensembl chr11:53,375,558...53,385,269 		JBrowse link
G GLI2 GLI family zinc finger 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLI3 GLI family zinc finger 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G GLI4 GLI family zinc finger 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:137,477,338...137,501,762
Ensembl chr 8:137,491,467...137,498,821 		JBrowse link
G GLIS1 GLIS family zinc finger 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:79,191,564...79,425,003
Ensembl chr20:79,330,407...79,424,623 		JBrowse link
G GLIS2 GLIS family zinc finger 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:3,996,333...4,019,499
Ensembl chr 5:3,996,372...4,019,542 		JBrowse link
G GLIS3 GLIS family zinc finger 3 enables ISO (MGI:3033266|PMID:14500813), (MGI:5004770|PMID:18263616), (MGI:5009496|PMID:19264802)
(PMID:14500813), (PMID:18263616), (PMID:19264802)		 BHF-UCL PMID:14500813 PMID:18263616 PMID:19264802 MGI:3033266 MGI:5004770 MGI:5009496 NCBI chr12:75,244,685...75,726,554 JBrowse link
G GMEB1 glucocorticoid modulatory element binding protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:104,096,913...104,142,565
Ensembl chr20:104,093,176...104,127,259 		JBrowse link
G GMEB2 glucocorticoid modulatory element binding protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:598,340...628,370
Ensembl chr 2:604,429...628,373 		JBrowse link
G GRHL1 grainyhead like transcription factor 1 enables ISO (PMID:12175488) NTNU_SB PMID:12175488 NCBI chr14:97,632,494...97,686,257 JBrowse link
G GRHL1 grainyhead like transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr14:97,643,358...97,686,191 JBrowse link
G GRHL2 grainyhead like transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:96,340,459...96,526,366
Ensembl chr 8:96,342,189...96,526,363 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:108,338,891...108,375,351
Ensembl chr20:108,330,121...108,361,887 		JBrowse link
G GSC goosecoid homeobox enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:72,581,639...72,585,745
Ensembl chr24:72,581,915...72,583,423 		JBrowse link
G GSC2 goosecoid homeobox 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:6,598,246...6,601,230
Ensembl chr19:6,598,259...6,599,532 		JBrowse link
G GSX1 GS homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:6,920,476...6,925,538
Ensembl chr 3:6,923,832...6,925,091 		JBrowse link
G GTF2IRD1 GTF2I repeat domain containing 1 enables ISO (PMID:9774679) ARUK-UCL PMID:9774679 NCBI chr28:8,512,006...8,583,110 JBrowse link
G GTF2IRD1 GTF2I repeat domain containing 1 enables IEA Ensembl GO_REF:0000107 Ensembl chr28:8,557,528...8,601,921 JBrowse link
G GZF1 GDNF inducible zinc finger protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:52,366,146...52,377,423
Ensembl chr 2:52,369,557...52,375,594 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HBP1 HMG-box transcription factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:76,088,411...76,121,884
Ensembl chr21:76,088,542...76,124,610 		JBrowse link
G HCFC1 host cell factor C1 enables ISO (PMID:18836447) MGI PMID:18836447 NCBI chr  X:128,371,518...128,395,920
Ensembl chr  X:128,371,517...128,394,861 		JBrowse link
G HDAC1 histone deacetylase 1 enables ISO (PMID:18974119) UniProt PMID:18974119 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G HDAC2 histone deacetylase 2 enables ISO (MGI:5817507|PMID:28053041), (PMID:24137001)
(PMID:24137001), (PMID:28053041)		 MGI
UniProt		 PMID:24137001 PMID:28053041 MGI:5817507 NCBI chr13:59,873,248...59,904,542
Ensembl chr13:59,873,767...59,905,742 		JBrowse link
G HDAC4 histone deacetylase 4 enables ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr10:125,098,375...125,450,524
Ensembl chr10:125,098,366...125,403,227 		JBrowse link
G HDAC5 histone deacetylase 5 enables IEA Ensembl GO_REF:0000107 NCBI chr16:62,267,837...62,314,914
Ensembl chr16:62,274,041...62,315,094 		JBrowse link
G HDAC6 histone deacetylase 6 enables ISO (PMID:24413532) UniProt PMID:24413532 NCBI chr  X:45,927,625...45,951,636
Ensembl chr  X:45,928,092...45,952,929 		JBrowse link
G HDGF heparin binding growth factor enables ISO PMID:19162039 NTNU_SB PMID:19162039 RGD:8554761 NCBI chr20:7,109,133...7,122,715
Ensembl chr20:7,119,450...7,122,834 		JBrowse link
G HDX highly divergent homeobox enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:73,219,279...73,400,420
Ensembl chr  X:73,219,292...73,399,961 		JBrowse link
G HELT helt bHLH transcription factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:130,982,298...130,988,696
Ensembl chr 7:130,985,304...130,987,148 		JBrowse link
G HES2 hes family bHLH transcription factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:125,325,043...125,327,076
Ensembl chr20:125,325,167...125,326,107 		JBrowse link
G HES3 hes family bHLH transcription factor 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:125,493,703...125,500,577 JBrowse link
G HES4 hes family bHLH transcription factor 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:130,433,355...130,438,589
Ensembl chr20:130,435,291...130,436,213 		JBrowse link
G HES5 hes family bHLH transcription factor 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:129,023,750...129,028,790
Ensembl chr20:129,027,370...129,028,065 		JBrowse link
G HES6 hes family bHLH transcription factor 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:124,263,894...124,266,345
Ensembl chr10:124,264,456...124,265,542 		JBrowse link
G HES7 hes family bHLH transcription factor 7 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:7,502,976...7,509,506
Ensembl chr16:7,503,932...7,506,448 		JBrowse link
G HESX1 HESX homeobox 1 enables ISO (MGI:5825430|PMID:17445765)
(PMID:17445765)
(PMID:11748154)
(PMID:26781211)		 NTNU_SB
UniProt		 PMID:11748154 PMID:17445765 PMID:26781211 MGI:5825430 NCBI chr22:18,517,067...18,546,882 JBrowse link
G HESX1 HESX homeobox 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr22:18,517,111...18,518,181 JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:75,225,081...75,228,941
Ensembl chr 8:75,224,769...75,228,896 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:47,965,808...47,977,435
Ensembl chr13:47,964,847...47,977,346 		JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:93,230,189...93,246,549 JBrowse link
G HHEX hematopoietically expressed homeobox enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:85,957,684...85,963,414
Ensembl chr 9:85,957,779...85,963,404 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G HIF3A hypoxia inducible factor 3 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 6:39,672,580...39,718,944
Ensembl chr 6:39,679,627...39,713,227 		JBrowse link
G HINFP histone H4 transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:110,495,188...110,509,855
Ensembl chr 1:110,500,566...110,510,222 		JBrowse link
G HIVEP1 HIVEP zinc finger 1 enables ISO (MGI:3584225|PMID:15778499) NTNU_SB PMID:15778499 MGI:3584225 NCBI chr17:59,987,718...60,143,296 JBrowse link
G HIVEP2 HIVEP zinc finger 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:30,476,938...30,501,708
Ensembl chr13:30,477,205...30,500,066 		JBrowse link
G HIVEP3 HIVEP zinc finger 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:90,990,286...91,405,094
Ensembl chr20:91,212,190...91,405,071 		JBrowse link
G HLF HLF transcription factor, PAR bZIP family member enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:38,048,114...38,108,798
Ensembl chr16:38,048,097...38,108,725 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (MGI:5644022|PMID:19389484), (PMID:22207709)
(PMID:19389484), (PMID:22207709)		 MGI
ARUK-UCL		 PMID:19389484 PMID:22207709 MGI:5644022 NCBI chr17:37,848,110...37,857,835
Ensembl chr17:37,849,412...37,853,880 		JBrowse link
G HNF1A HNF1 homeobox A enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:116,334,935...116,358,582
Ensembl chr11:116,335,675...116,357,751 		JBrowse link
G HNF1B HNF1 homeobox B enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:19,390,870...19,466,300
Ensembl chr 2:19,388,891...19,421,664 		JBrowse link
G HNF4G hepatocyte nuclear factor 4 gamma enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:70,971,287...71,133,212
Ensembl chr 8:71,106,434...71,133,206 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:81,879,532...81,890,684
Ensembl chr25:81,878,111...81,890,701 		JBrowse link
G HOXA1 homeobox A1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:31,272,410...31,275,503
Ensembl chr21:31,272,889...31,275,551 		JBrowse link
G HOXA10 homeobox A10 enables ISO (PMID:21471217) NTNU_SB PMID:21471217 NCBI chr21:31,189,240...31,198,244 JBrowse link
G HOXA11 homeobox A11 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:31,180,232...31,187,709
Ensembl chr21:31,183,682...31,186,010 		JBrowse link
G HOXA13 homeobox A13 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:31,168,239...31,175,960
Ensembl chr21:31,168,793...31,173,056 		JBrowse link