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ONTOLOGY REPORT - ANNOTATIONS

Term:mitochondrial RNA catabolic process
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Accession:GO:0000957 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
Synonyms:only_in_taxon: NCBITaxon:2759 ! Eukaryota


show annotations for term's descendants           Sort by:
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein involved_in ISO
IEA		 (PMID:39019044)
GO_REF:0000107		 RGD
Ensembl		 PMID:39019044 GO_REF:0000107 NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:3857306|MGI:5438913 (PMID:21880015), (PMID:22045337)		 Ensembl
RGD		 PMID:21880015 PMID:22045337 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO
IEA		 (PMID:39019044)
GO_REF:0000107		 RGD
Ensembl		 PMID:39019044 GO_REF:0000107 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18501193), (PMID:39019044) RGD PMID:18501193 PMID:39019044 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21245038), (PMID:21666256)		 Ensembl
RGD		 PMID:21245038 PMID:21666256 GO_REF:0000107 NCBI chr16:1,920,062...1,925,638
Ensembl chr16:1,915,386...1,925,887 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA		 (PMID:20691904)
GO_REF:0000033		 RGD
GO_Central		 PMID:20691904 GO_REF:0000033 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS		 (PMID:19864255)
GO_REF:0000024		 RGD
UniProt		 PMID:19864255 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19864255)		 UniProt
Ensembl
RGD		 PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO
IEA
ISS		 (PMID:19864255)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS		 (PMID:19864255)
GO_REF:0000024		 RGD
UniProt		 PMID:19864255 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1916394|MGI:3857306|MGI:5438913 (PMID:21880015), (PMID:22045337)		 Ensembl
RGD		 PMID:21880015 PMID:22045337 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Slirp SRA stem-loop interacting RNA binding protein acts_upstream_of_or_within ISO MGI:1919666 (PMID:22045337) RGD PMID:22045337 NCBI chr 6:107,088,760...107,097,791
Ensembl chr 6:107,088,403...107,097,791 		JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grsf1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) RGD PMID:29967381 NCBI chr14:19,412,944...19,429,364
Ensembl chr14:19,412,156...19,429,362 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:19509288), (PMID:29967381) RGD PMID:19509288 PMID:29967381 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:19509288), (PMID:19864255), (PMID:29967381)		 Ensembl
UniProt
RGD		 PMID:19509288 PMID:19864255 PMID:29967381 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        catabolic process 2871
          macromolecule catabolic process 1631
            nucleic acid catabolic process 419
              RNA catabolic process 389
                mitochondrial RNA catabolic process 8
                  mitochondrial RNA surveillance + 1
                  mitochondrial mRNA catabolic process + 3
                  negative regulation of mitochondrial RNA catabolic process + 2
                  positive regulation of mitochondrial RNA catabolic process + 3
                  regulation of mitochondrial RNA catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        primary metabolic process 10582
          nucleobase-containing compound metabolic process 5795
            nucleic acid metabolic process 5186
              nucleic acid catabolic process 419
                RNA catabolic process 389
                  mitochondrial RNA catabolic process 8
                    mitochondrial RNA surveillance + 1
                    mitochondrial mRNA catabolic process + 3
                    negative regulation of mitochondrial RNA catabolic process + 2
                    positive regulation of mitochondrial RNA catabolic process + 3
                    regulation of mitochondrial RNA catabolic process + 5
paths to the root