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ONTOLOGY REPORT - ANNOTATIONS

Term:nuclear-transcribed mRNA catabolic process
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Accession:GO:0000956 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
Synonyms:exact_synonym: nuclear mRNA breakdown;   nuclear mRNA catabolism;   nuclear mRNA degradation

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nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:18771919) UniProt PMID:18771919 NCBI chrNW_004624764:18,904,607...18,940,594
Ensembl chrNW_004624764:18,904,639...18,940,594 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624870:206,714...214,264
Ensembl chrNW_004624870:204,671...214,156 		JBrowse link
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004624832:6,384,317...6,400,622
Ensembl chrNW_004624832:6,384,317...6,400,612 		JBrowse link
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624843:4,900,810...5,196,827
Ensembl chrNW_004624843:4,901,316...5,196,827 		JBrowse link
G Dxo decapping exoribonuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,281,099...24,283,403
Ensembl chrNW_004624754:24,281,101...24,287,647 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004624818:1,699,729...1,722,999
Ensembl chrNW_004624818:1,699,744...1,725,343 		JBrowse link
G Exosc4 exosome component 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624735:12,744,266...12,746,253
Ensembl chrNW_004624735:12,744,266...12,746,289 		JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004624777:2,087,005...2,097,473 JBrowse link
G LOC101721698 decapping and exoribonuclease protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,288,517...24,290,821
Ensembl chrNW_004624754:24,281,099...24,290,816 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624780:5,473,172...5,483,584
Ensembl chrNW_004624780:5,473,041...5,483,300 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624908:1,595,877...1,603,075
Ensembl chrNW_004624908:1,595,877...1,603,043 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624828:6,576,672...6,584,303
Ensembl chrNW_004624828:6,576,708...6,584,303 		JBrowse link
G Mrto4 MRT4 homolog, ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:4,401,005...4,406,157
Ensembl chrNW_004624764:4,400,731...4,407,180 		JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004624865:937,495...1,208,663
Ensembl chrNW_004624865:961,587...1,212,950 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:15039777 RGD:10045958 NCBI chrNW_004624828:7,750,419...7,762,645
Ensembl chrNW_004624828:7,750,323...7,762,589 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:25026078)
(PMID:20639877)		 UniProt
BHF-UCL		 PMID:20639877 PMID:25026078 NCBI chrNW_004624771:7,837,547...7,948,217 JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:19,194,469...19,236,518
Ensembl chrNW_004624764:19,194,496...19,238,123 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004624908:1,909,995...1,935,370
Ensembl chrNW_004624908:1,910,315...1,933,655 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624730:18,903,506...19,021,392
Ensembl chrNW_004624730:18,907,959...19,020,724 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:21,691,099...21,768,267
Ensembl chrNW_004624741:21,691,199...21,767,790 		JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 acts_upstream_of_or_within
involved_in		 ISO (PMID:18625844)
(PMID:31439799)		 MGI
UniProt		 PMID:18625844 PMID:31439799 NCBI chrNW_004624769:22,047,177...22,065,314
Ensembl chrNW_004624769:22,046,526...22,065,339 		JBrowse link
G Dcp1a decapping mRNA 1A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624822:3,903,535...3,970,763
Ensembl chrNW_004624822:3,902,595...3,967,580 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624735:10,899,480...10,971,965
Ensembl chrNW_004624735:10,899,187...10,963,203 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624733:9,037,720...9,086,310
Ensembl chrNW_004624733:9,042,385...9,086,296 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624812:456,758...499,262
Ensembl chrNW_004624812:456,812...500,015 		JBrowse link
G LOC101718906 protein PAT1 homolog 2-like involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624761:8,809,645...8,811,414 JBrowse link
G LOC101722487 protein PAT1 homolog 2 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624736:14,241,342...14,243,073 JBrowse link
G LOC101725496 m7GpppN-mRNA hydrolase-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624746:14,689,582...14,703,934 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624780:5,473,172...5,483,584
Ensembl chrNW_004624780:5,473,041...5,483,300 		JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO (PMID:18625844) MGI PMID:18625844 NCBI chrNW_004624777:19,379,447...19,383,477 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) MGI PMID:18625844 NCBI chrNW_004624776:10,224,772...10,364,816
Ensembl chrNW_004624776:10,227,308...10,364,522 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624864:1,136,868...1,162,720
Ensembl chrNW_004624864:1,136,999...1,161,320 		JBrowse link
G Patl2 PAT1 homolog 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624804:11,545,393...11,572,800 JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:3,903,535...3,970,763
Ensembl chrNW_004624822:3,902,595...3,967,580 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:10,899,480...10,971,965
Ensembl chrNW_004624735:10,899,187...10,963,203 		JBrowse link
G Edc3 enhancer of mRNA decapping 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624781:35,765...41,990 JBrowse link
G Edc4 enhancer of mRNA decapping 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624746:18,492,486...18,504,211
Ensembl chrNW_004624746:18,491,196...18,504,301 		JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) UniProt PMID:16086026 NCBI chrNW_004624784:2,933,172...3,080,131
Ensembl chrNW_004624784:2,937,499...3,078,216 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624733:9,037,720...9,086,310
Ensembl chrNW_004624733:9,042,385...9,086,296 		JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624839:5,090,187...5,119,985
Ensembl chrNW_004624839:5,090,369...5,118,775 		JBrowse link
G Exosc10 exosome component 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,699,729...1,722,999
Ensembl chrNW_004624818:1,699,744...1,725,343 		JBrowse link
G Exosc4 exosome component 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624735:12,744,266...12,746,253
Ensembl chrNW_004624735:12,744,266...12,746,289 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624780:5,473,172...5,483,584
Ensembl chrNW_004624780:5,473,041...5,483,300 		JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624805:2,651,464...2,727,894
Ensembl chrNW_004624805:2,651,121...2,672,899 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624869:4,089,253...4,148,455
Ensembl chrNW_004624869:4,089,282...4,147,211 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624757:6,415,226...6,491,539
Ensembl chrNW_004624757:6,422,421...6,491,434 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624926:1,113,331...1,123,930
Ensembl chrNW_004624926:1,112,309...1,123,959 		JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624859:676,112...800,894
Ensembl chrNW_004624859:675,754...800,343 		JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624809:11,030,422...11,094,754
Ensembl chrNW_004624809:11,031,693...11,084,723 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:16086026) UniProt PMID:16086026 NCBI chrNW_004624908:1,909,995...1,935,370
Ensembl chrNW_004624908:1,910,315...1,933,655 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004624730:18,903,506...19,021,392
Ensembl chrNW_004624730:18,907,959...19,020,724 		JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004624747:7,899,128...7,949,911
Ensembl chrNW_004624747:7,899,439...7,949,930 		JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csde1 cold shock domain containing E1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chrNW_004624772:10,369,447...10,406,718 JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) ComplexPortal PMID:19029303 NCBI chrNW_004624814:10,863,079...10,923,842
Ensembl chrNW_004624814:10,863,337...10,921,075 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chrNW_004624757:8,532,373...8,549,840
Ensembl chrNW_004624757:8,531,601...8,549,835 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:19029303) ComplexPortal PMID:19029303 NCBI chrNW_004624771:14,756,088...14,766,106
Ensembl chrNW_004624771:14,756,100...14,765,832 		JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:5,352,932...5,391,617
Ensembl chrNW_004624795:5,353,005...5,385,521 		JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chrNW_004624763:7,552,541...7,568,047
Ensembl chrNW_004624763:7,550,307...7,567,918 		JBrowse link
G Paip1 poly(A) binding protein interacting protein 1 involved_in ISO (PMID:11051545) ComplexPortal PMID:11051545 NCBI chrNW_004624759:11,646,632...11,687,981
Ensembl chrNW_004624759:11,646,848...11,686,871 		JBrowse link
G Syncrip synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:11051545), (PMID:19029303) ComplexPortal PMID:11051545 PMID:19029303 NCBI chrNW_004624799:8,616,787...8,657,466
Ensembl chrNW_004624799:8,616,808...8,652,923 		JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:19029303) ComplexPortal PMID:19029303 NCBI chrNW_004624892:1,939,641...1,957,621
Ensembl chrNW_004624892:1,939,098...1,957,623 		JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in ISO (PMID:12881431) ComplexPortal PMID:12881431 NCBI chrNW_004624791:12,757,319...12,868,364
Ensembl chrNW_004624791:12,757,319...12,868,422 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO (PMID:12881431) ComplexPortal PMID:12881431 NCBI chrNW_004624860:4,938,001...4,957,640
Ensembl chrNW_004624860:4,938,001...4,957,236 		JBrowse link
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004624832:6,384,317...6,400,622
Ensembl chrNW_004624832:6,384,317...6,400,612 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:41,387,068...41,403,701
Ensembl chrNW_004624733:41,398,123...41,403,617 		JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004624865:937,495...1,208,663
Ensembl chrNW_004624865:961,587...1,212,950 		JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:18447585) UniProt PMID:18447585 NCBI chrNW_004624763:7,552,541...7,568,047
Ensembl chrNW_004624763:7,550,307...7,567,918 		JBrowse link
G Secisbp2 SECIS binding protein 2 acts_upstream_of_or_within ISO (PMID:24274065) MGI PMID:24274065 NCBI chrNW_004624765:23,246,342...23,296,071
Ensembl chrNW_004624765:23,247,135...23,296,465 		JBrowse link
G Syncrip synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:12881431) ComplexPortal PMID:12881431 NCBI chrNW_004624799:8,616,787...8,657,466
Ensembl chrNW_004624799:8,616,808...8,652,923 		JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay involved_in ISO (PMID:27040500) MGI PMID:27040500 NCBI chrNW_004624793:134,607...151,730
Ensembl chrNW_004624793:136,642...151,692 		JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004624751:4,387,075...4,418,516
Ensembl chrNW_004624751:4,386,857...4,416,719 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004624757:6,415,226...6,491,539
Ensembl chrNW_004624757:6,422,421...6,491,434 		JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:6,689,005...6,693,580
Ensembl chrNW_004624795:6,689,005...6,693,582 		JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:9154801) CAFA PMID:9154801 NCBI chrNW_004624787:7,292,549...7,301,190 JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISO (PMID:23523372) UniProt PMID:23523372 NCBI chrNW_004624754:24,281,099...24,283,403
Ensembl chrNW_004624754:24,281,101...24,287,647 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563), (PMID:20699273) UniProt PMID:17545563 PMID:20699273 NCBI chrNW_004624818:1,699,729...1,722,999
Ensembl chrNW_004624818:1,699,744...1,725,343 		JBrowse link
G Exosc4 exosome component 4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624735:12,744,266...12,746,253
Ensembl chrNW_004624735:12,744,266...12,746,289 		JBrowse link
G Exosc5 exosome component 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624907:197,666...203,595
Ensembl chrNW_004624907:197,666...203,600 		JBrowse link
G Exosc6 exosome component 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:12,538,315...12,539,678
Ensembl chrNW_004624746:12,538,775...12,539,593 		JBrowse link
G Exosc7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:75,541,677...75,561,826
Ensembl chrNW_004624730:75,541,568...75,561,767 		JBrowse link
G Exosc8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624776:223,236...230,572
Ensembl chrNW_004624776:223,236...230,620 		JBrowse link
G Exosc9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624777:2,087,005...2,097,473 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004624730:18,903,506...19,021,392
Ensembl chrNW_004624730:18,907,959...19,020,724 		JBrowse link
nuclear mRNA surveillance of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624751:27,760,665...27,786,403
Ensembl chrNW_004624751:27,760,776...27,785,613 		JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624930:725,808...968,072
Ensembl chrNW_004624930:731,051...966,675 		JBrowse link
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101721343 helicase SKI2W involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,283,459...24,287,272 JBrowse link
G LOC106007520 helicase SKI2W involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,290,877...24,299,933
Ensembl chrNW_004624754:24,290,925...24,299,872 		JBrowse link
G Skic3 SKI3 subunit of superkiller complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:14,111,237...14,197,726
Ensembl chrNW_004624743:14,110,991...14,198,267 		JBrowse link
G Skic8 SKI8 subunit of superkiller complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624894:2,575,870...2,592,667
Ensembl chrNW_004624894:2,575,916...2,592,666 		JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:27,659,424...27,757,024
Ensembl chrNW_004624746:27,676,325...27,756,754 		JBrowse link
G Cnot6l CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (PMID:17452450) MGI PMID:17452450 NCBI chrNW_004624757:13,218,464...13,346,404
Ensembl chrNW_004624757:13,219,267...13,340,955 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624812:456,758...499,262
Ensembl chrNW_004624812:456,812...500,015 		JBrowse link
G LOC106007496 roquin-2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004625523:7...6,540 JBrowse link
G Pabpn1l PABPN1 like, cytoplasmic involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32558204) TreeGrafter
MGI		 PMID:32558204 GO_REF:0000118 NCBI chrNW_004624746:776,692...779,187
Ensembl chrNW_004624746:776,677...779,555 		JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624802:11,668,977...11,686,840
Ensembl chrNW_004624802:11,669,908...11,686,122 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624776:10,224,772...10,364,816
Ensembl chrNW_004624776:10,227,308...10,364,522 		JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624821:306,055...311,101
Ensembl chrNW_004624821:305,864...313,881 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:7,837,547...7,948,217 JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:12,025,206...12,074,548 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within		 ISO (PMID:23644599)
(PMID:15814898)		 UniProt
MGI		 PMID:15814898 PMID:23644599 NCBI chrNW_004624794:12,732,222...12,738,006
Ensembl chrNW_004624794:12,734,191...12,737,971 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15814898) MGI
Ensembl		 PMID:15814898 GO_REF:0000107 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211 		JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 acts_upstream_of_or_within ISO (PMID:15814898) MGI PMID:15814898 NCBI chrNW_004624738:24,743,388...24,747,572
Ensembl chrNW_004624738:24,744,213...24,747,591 		JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:11279239) UniProt PMID:11279239 NCBI chrNW_004624794:12,732,222...12,738,006
Ensembl chrNW_004624794:12,734,191...12,737,971 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211 		JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:15314026) UniProt PMID:15314026 NCBI chrNW_004624733:43,137,751...43,195,004
Ensembl chrNW_004624733:43,138,758...43,187,791 		JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO (PMID:15314026) UniProt PMID:15314026 NCBI chrNW_004624772:10,369,447...10,406,718 JBrowse link
G Gtpbp2 GTP binding protein 2 acts_upstream_of_or_within ISO (PMID:25061210) MGI PMID:25061210 NCBI chrNW_004624754:16,052,001...16,060,925
Ensembl chrNW_004624754:16,053,822...16,060,871 		JBrowse link
G Hbs1l HBS1 like translational GTPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624886:2,606,072...2,691,323
Ensembl chrNW_004624886:2,605,364...2,691,705 		JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624759:6,525,529...6,527,320
Ensembl chrNW_004624759:6,525,418...6,527,322 		JBrowse link
G Tesk1 testis associated actin remodelling kinase 1 involved_in ISO (PMID:30115939) UniProt PMID:30115939 NCBI chrNW_004624868:5,198,276...5,203,376
Ensembl chrNW_004624868:5,198,984...5,204,019 		JBrowse link
nuclear-transcribed mRNA catabolic process, non-stop decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:6,525,529...6,527,320
Ensembl chrNW_004624759:6,525,418...6,527,322 		JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624795:3,048,800...3,068,432
Ensembl chrNW_004624795:3,046,880...3,068,840 		JBrowse link
G Ctif cap binding complex dependent translation initiation factor involved_in ISO (PMID:19648179) UniProt PMID:19648179 NCBI chrNW_004624778:12,085,856...12,371,623
Ensembl chrNW_004624778:12,085,702...12,371,721 		JBrowse link
G Dcp1a decapping mRNA 1A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624822:3,903,535...3,970,763
Ensembl chrNW_004624822:3,902,595...3,967,580 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624735:10,899,480...10,971,965
Ensembl chrNW_004624735:10,899,187...10,963,203 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624733:9,037,720...9,086,310
Ensembl chrNW_004624733:9,042,385...9,086,296 		JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in ISO (PMID:17468741) UniProt PMID:17468741 NCBI chrNW_004624763:23,256,617...23,294,346
Ensembl chrNW_004624763:23,256,498...23,294,299 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chrNW_004624801:9,240,780...9,250,864
Ensembl chrNW_004624801:9,240,780...9,250,863 		JBrowse link
G Etf1 eukaryotic translation termination factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624743:31,280,547...31,313,086 JBrowse link
G LOC101697104 regulator of nonsense transcripts 3A-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624854:428,839...430,815 JBrowse link
G LOC101725496 m7GpppN-mRNA hydrolase-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624746:14,689,582...14,703,934 JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624934:1,223,264...1,234,538 JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:23917022) HGNC PMID:23917022 NCBI chrNW_004624752:27,280,411...27,288,292
Ensembl chrNW_004624752:27,280,407...27,288,260 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:3,166,895...3,206,444
Ensembl chrNW_004624825:3,164,700...3,206,241 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624730:61,925,831...61,931,451
Ensembl chrNW_004624730:61,925,831...61,931,385 		JBrowse link
G Pnrc2 proline rich nuclear receptor coactivator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:8,455,340...8,459,371
Ensembl chrNW_004624764:8,455,556...8,459,371 		JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor involved_in ISO (PMID:19410547) UniProt PMID:19410547 NCBI chrNW_004624802:12,118,861...12,136,473
Ensembl chrNW_004624802:12,118,615...12,136,561 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chrNW_004624772:17,286,950...17,289,143
Ensembl chrNW_004624772:17,286,957...17,295,135 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624824:67,927...78,276
Ensembl chrNW_004624824:67,927...78,180 		JBrowse link
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624782:2,253,604...2,349,590
Ensembl chrNW_004624782:2,255,333...2,349,547 		JBrowse link
G Smg5 SMG5 nonsense mediated mRNA decay factor involved_in IEA TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624885:1,532,101...1,565,811
Ensembl chrNW_004624885:1,532,101...1,560,307 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624786:4,729,857...4,969,708
Ensembl chrNW_004624786:4,726,676...4,969,646 		JBrowse link
G Smg7 SMG7 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624814:10,135,733...10,224,991
Ensembl chrNW_004624814:10,137,548...10,224,825 		JBrowse link
G Smg8 SMG8 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624871:1,094,686...1,100,633
Ensembl chrNW_004624871:1,094,710...1,100,633 		JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624907:1,237,658...1,255,589
Ensembl chrNW_004624907:1,237,451...1,255,586 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624908:1,909,995...1,935,370
Ensembl chrNW_004624908:1,910,315...1,933,655 		JBrowse link
G Upf2 UPF2 regulator of nonsense mediated mRNA decay involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624775:7,142,411...7,249,637 JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay NOT|involved_in ISO
IEA		 (PMID:16601204) UniProt
UniProt
InterPro		 PMID:16601204 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624793:134,607...151,730
Ensembl chrNW_004624793:136,642...151,692 		JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23821644) InterPro
MGI
TreeGrafter
UniProt		 PMID:23821644 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624895:3,762,087...3,781,662 JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20595389) UniProt PMID:20595389 NCBI chrNW_004624733:43,137,751...43,195,004
Ensembl chrNW_004624733:43,138,758...43,187,791 		JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within		 ISO (PMID:21336257)
(PMID:18625844)		 UniProt
MGI		 PMID:18625844 PMID:21336257 NCBI chrNW_004624769:22,047,177...22,065,314
Ensembl chrNW_004624769:22,046,526...22,065,339 		JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO (PMID:11337385) MGI PMID:11337385 NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624802:11,668,977...11,686,840
Ensembl chrNW_004624802:11,669,908...11,686,122 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624776:10,224,772...10,364,816
Ensembl chrNW_004624776:10,227,308...10,364,522 		JBrowse link
G Parn poly(A)-specific ribonuclease acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18337750) MGI
TreeGrafter		 PMID:18337750 GO_REF:0000118 NCBI chrNW_004624782:3,920,042...4,092,179
Ensembl chrNW_004624782:3,919,965...4,093,743 		JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624855:3,088,457...3,111,711
Ensembl chrNW_004624855:3,087,365...3,112,123 		JBrowse link
G Samd4a sterile alpha motif domain containing 4A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:14,537,063...14,744,703
Ensembl chrNW_004624731:14,537,065...14,742,406 		JBrowse link
G Samd4b sterile alpha motif domain containing 4B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,677,695...12,724,595
Ensembl chrNW_004624794:12,686,543...12,719,695 		JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within		 ISO (PMID:23644599)
(PMID:15814898)		 BHF-UCL
MGI		 PMID:15814898 PMID:23644599 NCBI chrNW_004624794:12,732,222...12,738,006
Ensembl chrNW_004624794:12,734,191...12,737,971 		JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:16364915) UniProt PMID:16364915 NCBI chrNW_004624794:12,732,222...12,738,006
Ensembl chrNW_004624794:12,734,191...12,737,971 		JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004624735:15,785,831...15,853,854
Ensembl chrNW_004624735:15,785,114...15,842,435 		JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:21278420) UniProt PMID:21278420 NCBI chrNW_004624746:27,659,424...27,757,024
Ensembl chrNW_004624746:27,676,325...27,756,754 		JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:21278420)
(PMID:19716330)		 UniProt PMID:19716330 PMID:21278420 NCBI chrNW_004624769:22,047,177...22,065,314
Ensembl chrNW_004624769:22,046,526...22,065,339 		JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004624737:3,352,064...3,570,317
Ensembl chrNW_004624737:3,355,360...3,542,731 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) UniProt PMID:14731398 NCBI chrNW_004624730:31,857,157...31,913,985
Ensembl chrNW_004624730:31,855,992...31,914,253 		JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004624763:7,552,541...7,568,047
Ensembl chrNW_004624763:7,550,307...7,567,918 		JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004624752:8,125,472...8,394,809
Ensembl chrNW_004624752:8,137,532...8,336,877 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chrNW_004624801:7,552,644...7,644,755
Ensembl chrNW_004624801:7,552,030...7,638,834 		JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:6,689,005...6,693,580
Ensembl chrNW_004624795:6,689,005...6,693,582 		JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624794:12,732,222...12,738,006
Ensembl chrNW_004624794:12,734,191...12,737,971 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624734:32,251,100...32,256,458
Ensembl chrNW_004624734:32,251,114...32,257,211 		JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624738:24,743,388...24,747,572
Ensembl chrNW_004624738:24,744,213...24,747,591 		JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004624735:15,785,831...15,853,854
Ensembl chrNW_004624735:15,785,114...15,842,435 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) MGI PMID:18337750 NCBI chrNW_004624807:7,541,335...7,545,412
Ensembl chrNW_004624807:7,540,602...7,545,521 		JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:21278420)
(PMID:23644599)		 UniProt
BHF-UCL		 PMID:21278420 PMID:23644599 NCBI chrNW_004624746:27,659,424...27,757,024
Ensembl chrNW_004624746:27,676,325...27,756,754 		JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:21278420)
(PMID:19716330)		 UniProt PMID:19716330 PMID:21278420 NCBI chrNW_004624769:22,047,177...22,065,314
Ensembl chrNW_004624769:22,046,526...22,065,339 		JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004624737:3,352,064...3,570,317
Ensembl chrNW_004624737:3,355,360...3,542,731 		JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004624747:7,899,128...7,949,911
Ensembl chrNW_004624747:7,899,439...7,949,930 		JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004624763:7,552,541...7,568,047
Ensembl chrNW_004624763:7,550,307...7,567,918 		JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,228,590...1,230,943
Ensembl chrNW_004624926:1,228,602...1,230,943 		JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:9,608,245...9,807,237 JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:8,125,472...8,394,809
Ensembl chrNW_004624752:8,137,532...8,336,877 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:7,552,644...7,644,755
Ensembl chrNW_004624801:7,552,030...7,638,834 		JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:6,689,005...6,693,580
Ensembl chrNW_004624795:6,689,005...6,693,582 		JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:21278420)
(PMID:20595389)
(PMID:10330172)		 UniProt PMID:10330172 PMID:20595389 PMID:21278420 NCBI chrNW_004624794:12,732,222...12,738,006
Ensembl chrNW_004624794:12,734,191...12,737,971 		JBrowse link
regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caprin1 cell cycle associated protein 1 involved_in ISO (PMID:31439799) UniProt PMID:31439799 NCBI chrNW_004624767:13,010,512...13,049,507
Ensembl chrNW_004624767:13,012,149...13,048,808 		JBrowse link
regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:31636267) UniProt PMID:31636267 NCBI chrNW_004624771:7,837,547...7,948,217 JBrowse link
regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit involved_in ISO (PMID:19478851) ComplexPortal PMID:19478851 NCBI chrNW_004624795:3,048,800...3,068,432
Ensembl chrNW_004624795:3,046,880...3,068,840 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:19478851) ComplexPortal PMID:19478851 NCBI chrNW_004624801:9,240,780...9,250,864
Ensembl chrNW_004624801:9,240,780...9,250,863 		JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624934:1,223,264...1,234,538 JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:19478851) ComplexPortal PMID:19478851 NCBI chrNW_004624772:17,286,950...17,289,143
Ensembl chrNW_004624772:17,286,957...17,295,135 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17640
    cellular process 17222
      metabolic process 11022
        macromolecule metabolic process 9138
          nucleic acid metabolic process 5391
            RNA metabolic process 4853
              RNA catabolic process 292
                mRNA catabolic process 249
                  nuclear-transcribed mRNA catabolic process 121
                    deadenylation-dependent decapping of nuclear-transcribed mRNA + 15
                    histone mRNA catabolic process + 15
                    nuclear mRNA surveillance + 11
                    nuclear-transcribed mRNA catabolic process, RNase MRP-dependent 0
                    nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 52
                    nuclear-transcribed mRNA catabolic process, deadenylation-independent decay + 6
                    nuclear-transcribed mRNA catabolic process, no-go decay 6
                    nuclear-transcribed mRNA catabolic process, non-stop decay 1
                    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay + 40
                    nuclear-transcribed mRNA poly(A) tail shortening + 23
Path 2
Term Annotations click to browse term
  biological_process 17640
    biological regulation 11843
      regulation of biological process 11485
        regulation of cellular process 11159
          negative regulation of cellular process 5033
            negative regulation of metabolic process 2774
              negative regulation of biosynthetic process 2206
                negative regulation of macromolecule biosynthetic process 2120
                  negative regulation of gene expression 1079
                    mRNA catabolic process 249
                      nuclear-transcribed mRNA catabolic process 121
                        deadenylation-dependent decapping of nuclear-transcribed mRNA + 15
                        histone mRNA catabolic process + 15
                        nuclear mRNA surveillance + 11
                        nuclear-transcribed mRNA catabolic process, RNase MRP-dependent 0
                        nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 52
                        nuclear-transcribed mRNA catabolic process, deadenylation-independent decay + 6
                        nuclear-transcribed mRNA catabolic process, no-go decay 6
                        nuclear-transcribed mRNA catabolic process, non-stop decay 1
                        nuclear-transcribed mRNA catabolic process, nonsense-mediated decay + 40
                        nuclear-transcribed mRNA poly(A) tail shortening + 23
paths to the root