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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear-transcribed mRNA catabolic process
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Accession:GO:0000956 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
Synonyms:exact_synonym: nuclear mRNA breakdown;   nuclear mRNA catabolism;   nuclear mRNA degradation


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nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago1 argonaute RISC component 1 JBrowse link 5 144,444,390 144,479,430 RGD:1624291
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:1624291
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 123,162,086 123,168,330 RGD:1600115
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:1600115
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 11,724,932 11,732,020 RGD:1600115
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Nbas NBAS subunit of NRZ tethering complex JBrowse link 6 38,474,773 38,777,146 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:10045958
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
RGD:13792537
G Xrn2 5'-3' exoribonuclease 2 JBrowse link 3 141,224,858 141,298,272 RGD:13792537
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07066144.1 RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:13792537
RGD:1600115
G LOC100909830 mRNA-decapping enzyme 2-like JBrowse link 18 78,577,303 78,610,463 RGD:13792537
G LOC100912393 mRNA-decapping enzyme 2-like JBrowse link 9 3,940,948 3,965,964 RGD:13792537
G LOC103690064 m7GpppN-mRNA hydrolase-like JBrowse link 18 35,849,655 35,883,568 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:13792537
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:1624291
RGD:13792537
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1600115
RGD:13792537
RGD:1624291
G Patl2 PAT1 homolog 2 JBrowse link 3 114,065,814 114,075,404 RGD:13792537
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Edc3 enhancer of mRNA decapping 3 JBrowse link 8 62,482,126 62,527,665 RGD:13792537
G Edc4 enhancer of mRNA decapping 4 JBrowse link 19 37,852,659 37,864,651 RGD:13792537
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6 CCR4-NOT transcription complex, subunit 6 JBrowse link 10 35,144,291 35,195,126 RGD:1624291
RGD:1600115
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
RGD:13792537
G Cnot8 CCR4-NOT transcription complex, subunit 8 JBrowse link 10 43,538,150 43,551,271 RGD:1624291
RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:1624291
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
RGD:13792537
histone mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:13792537
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:1624291
G Mtpap mitochondrial poly(A) polymerase JBrowse link 17 56,046,507 56,068,185 RGD:1624291
G Tent2 terminal nucleotidyltransferase 2 JBrowse link 2 22,746,290 22,798,252 RGD:1624291
RGD:1600115
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:13792537
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
RGD:13792537
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 1 225,151,462 225,162,445 RGD:1624291
RGD:1600115
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
G Tut7 terminal uridylyl transferase 7 JBrowse link 17 5,225,854 5,279,674 RGD:1624291
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:1624291
G Nbas NBAS subunit of NRZ tethering complex JBrowse link 6 38,474,773 38,777,146 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Secisbp2 SECIS binding protein 2 JBrowse link 17 13,555,348 13,586,595 RGD:1624291
RGD:1600115
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1600115
RGD:1624291
nuclear histone mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
nuclear mRNA surveillance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:1624291
RGD:1600115
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
RGD:13792537
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
nuclear retention of pre-mRNA at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:13792537
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:13792537
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Skiv2l Ski2 like RNA helicase JBrowse link 20 4,519,457 4,530,177 RGD:13792537
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:13792537
G Cnot6l CCR4-NOT transcription complex, subunit 6-like JBrowse link 14 15,059,101 15,148,255 RGD:1624291
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:13792537
RGD:1624291
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1624291
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344953
nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
RGD:13792537
nuclear-transcribed mRNA catabolic process, exonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1624291
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1357938
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:13792537
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1600115
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6 CCR4-NOT transcription complex, subunit 6 JBrowse link 10 35,144,291 35,195,126 RGD:1624291
RGD:1600115
G Csde1 cold shock domain containing E1 JBrowse link 2 205,525,194 205,552,987 RGD:1624291
G Gtpbp2 GTP binding protein 2 JBrowse link 9 17,198,957 17,208,456 RGD:1624291
G Pelo pelota mRNA surveillance and ribosome rescue factor JBrowse link 2 47,266,758 47,268,526 RGD:13792537
nuclear-transcribed mRNA catabolic process, non-stop decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pelo pelota mRNA surveillance and ribosome rescue factor JBrowse link 2 47,266,758 47,268,526 RGD:1600115
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casc3 CASC3 exon junction complex subunit JBrowse link 10 86,724,534 86,744,485 RGD:1600115
G Ctif cap binding complex dependent translation initiation factor JBrowse link 18 71,467,381 71,701,423 RGD:1624291
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:13792537
G Eif3e eukaryotic translation initiation factor 3 subunit E JBrowse link 7 82,997,694 83,037,231 RGD:1624291
G Eif3el1 eukaryotic translation initiation factor 3, subunit E-like 1 JBrowse link 13 100,129,757 100,162,596 RGD:1600115
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1624291
G Etf1 eukaryotic translation termination factor 1 JBrowse link 18 27,698,693 27,725,694 RGD:1600115
G LOC108348260 eukaryotic translation initiation factor 3 subunit E RGD:1600115
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:1624291
G Magohb mago homolog B, exon junction complex subunit JBrowse link 4 165,514,584 165,522,366 RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
RGD:13792537
RGD:1624291
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1600115
G Pnrc2 proline-rich nuclear receptor coactivator 2 JBrowse link 5 154,220,552 154,223,536 RGD:1624291
RGD:13792537
RGD:1600115
G Pym1 PYM homolog 1, exon junction complex associated factor JBrowse link 7 3,172,798 3,193,994 RGD:1624291
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1624291
RGD:13792537
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:1624291
G Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 1 187,781,577 187,882,833 RGD:1624291
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link 10
10
61,526,024
61,771,912
61,542,583
62,007,030
RGD:1624291
RGD:13792537
G Smg8 SMG8 nonsense mediated mRNA decay factor JBrowse link 10 74,379,224 74,388,838 RGD:1624291
G Smg9 SMG9 nonsense mediated mRNA decay factor JBrowse link 1 81,259,450 81,282,893 RGD:1624291
RGD:13792537
RGD:1600115
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
RGD:13792537
G Upf2 UPF2, regulator of nonsense mediated mRNA decay JBrowse link 17 76,176,379 76,287,246 RGD:1624291
RGD:13792537
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay JBrowse link 16 81,521,084 81,532,512 RGD:1624291
G Upf3b UPF3B, regulator of nonsense mediated mRNA decay JBrowse link X 123,713,327 123,731,431 RGD:1624291
RGD:13792537
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot2 CCR4-NOT transcription complex, subunit 2 JBrowse link 7 59,526,105 59,617,307 RGD:13792537
G Cnot3 CCR4-NOT transcription complex, subunit 3 JBrowse link 1 64,130,823 64,147,066 RGD:13792537
G Cnot6 CCR4-NOT transcription complex, subunit 6 JBrowse link 10 35,144,291 35,195,126 RGD:1624291
RGD:1600115
RGD:13792537
G Cnot6l CCR4-NOT transcription complex, subunit 6-like JBrowse link 14 15,059,101 15,148,255 RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:1624291
RGD:1600115
G Pan2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 7 2,717,021 2,736,541 RGD:1600115
RGD:13792537
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:13792537
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
RGD:13792537
G Pnldc1 PARN like, ribonuclease domain containing 1 JBrowse link 1 48,038,830 48,058,400 RGD:1624291
RGD:13792537
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:13792537
G Samd4b sterile alpha motif domain containing 4B JBrowse link 1 85,324,017 85,362,266 RGD:13792537
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1624291
G Nanos1 nanos C2HC-type zinc finger 1 JBrowse link 1 282,134,676 282,140,370 RGD:1624291
G Nanos2 nanos C2HC-type zinc finger 2 JBrowse link 1 79,894,450 79,895,910 RGD:1624291
G Nanos3 nanos C2HC-type zinc finger 3 JBrowse link 19 25,284,907 25,288,680 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:1624291
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:1624291
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1624291
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344945
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1600115
RGD:1624291
G Btg2 BTG anti-proliferation factor 2 JBrowse link 13 50,913,185 50,916,944 RGD:1624291
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:13792537
G Tnrc6a trinucleotide repeat containing adaptor 6A JBrowse link 1 192,991,584 193,146,403 RGD:13792537
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:1624291
RGD:13792537
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:1624291
RGD:13792537
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1600115
RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      negative regulation of metabolic process 3227
        negative regulation of macromolecule metabolic process 2957
          negative regulation of gene expression 2076
            mRNA catabolic process 225
              nuclear-transcribed mRNA catabolic process 112
                deadenylation-dependent decapping of nuclear-transcribed mRNA 14
                histone mRNA catabolic process + 16
                nuclear mRNA surveillance + 13
                nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 53
                nuclear-transcribed mRNA catabolic process, deadenylation-independent decay + 6
                nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay + 2
                nuclear-transcribed mRNA catabolic process, exonucleolytic + 15
                nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts 0
                nuclear-transcribed mRNA catabolic process, no-go decay 4
                nuclear-transcribed mRNA catabolic process, non-stop decay 1
                nuclear-transcribed mRNA catabolic process, nonsense-mediated decay + 28
                nuclear-transcribed mRNA poly(A) tail shortening + 25
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA catabolic process 261
                  mRNA catabolic process 225
                    nuclear-transcribed mRNA catabolic process 112
                      deadenylation-dependent decapping of nuclear-transcribed mRNA 14
                      histone mRNA catabolic process + 16
                      nuclear mRNA surveillance + 13
                      nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 53
                      nuclear-transcribed mRNA catabolic process, deadenylation-independent decay + 6
                      nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay + 2
                      nuclear-transcribed mRNA catabolic process, exonucleolytic + 15
                      nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts 0
                      nuclear-transcribed mRNA catabolic process, no-go decay 4
                      nuclear-transcribed mRNA catabolic process, non-stop decay 1
                      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay + 28
                      nuclear-transcribed mRNA poly(A) tail shortening + 25
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.