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ONTOLOGY REPORT - ANNOTATIONS


Term:sex chromosome
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Accession:GO:0000803 term browser browse the term
Definition:A chromosome involved in sex determination.


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sex chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smc5 structural maintenance of chromosomes 5 ISO (MGI:4818566|PMID:11408570) RGD PMID:11408570 MGI:4818566 NCBI chr 1:240,977,898...241,046,273
Ensembl chr 1:240,977,898...241,046,256
JBrowse link
G Smc6 structural maintenance of chromosomes 6 ISO (MGI:4818566|PMID:11408570) RGD PMID:11408570 MGI:4818566 NCBI chr 6:36,941,233...36,995,920
Ensembl chr 6:36,941,233...36,995,138
JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2az1 H2A.Z variant histone 1 NOT ISO (PMID:11331621) RGD PMID:11331621 NCBI chr 2:243,105,224...243,107,333
Ensembl chr 2:243,105,674...243,106,956
JBrowse link
G H3f3a H3.3 histone A IEA
ISO
GO_REF:0000107
(MGI:3528534|PMID:15657431)
Ensembl
RGD
PMID:15657431 GO_REF:0000107, MGI:3528534 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3.3 histone B IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:5803776|PMID:26391951)
(PMID:23542155)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23542155, PMID:26391951 GO_REF:0000024, GO_REF:0000107, MGI:5803776 NCBI chr 2:209,358,668...209,448,123
Ensembl chr 2:209,358,760...209,448,123
JBrowse link
G Macroh2a1 macroH2A.1 histone ISO (PMID:11331621), (PMID:18936163) RGD PMID:11331621, PMID:18936163 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone ISO (PMID:11331621) RGD PMID:11331621 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:23542155)
(MGI:3821390|PMID:18425126), (MGI:5803776|PMID:26391951)
RGD PMID:18425126, PMID:23542155, PMID:26391951 MGI:3821390, MGI:5803776 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
inactive sex chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO
IBA
GO_REF:0000107
(PMID:14608463)
PMID:21873635
(MGI:4831049|PMID:20833368)
Ensembl
RGD
PMID:14608463, PMID:20833368, PMID:21873635 GO_REF:0000107, MGI:4831049, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
sex chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eed embryonic ectoderm development ISO (MGI:3513221|PMID:15525528) RGD PMID:15525528 MGI:3513221 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO (MGI:3513221|PMID:15525528) RGD PMID:15525528 MGI:3513221 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Phc1 polyhomeotic homolog 1 ISO (MGI:3513221|PMID:15525528) RGD PMID:15525528 MGI:3513221 NCBI chr 4:155,093,947...155,118,838
Ensembl chr 4:155,093,949...155,116,154
JBrowse link
G Ring1 ring finger protein 1 ISO (MGI:3513221|PMID:15525528) RGD PMID:15525528 MGI:3513221 NCBI chr20:3,812,287...3,815,834
Ensembl chr20:3,812,287...3,815,834
JBrowse link
G Rnf2 ring finger protein 2 IEA
ISO
GO_REF:0000107
(MGI:3513221|PMID:15525528)
Ensembl
RGD
PMID:15525528 GO_REF:0000107, MGI:3513221 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO (MGI:3513221|PMID:15525528) RGD PMID:15525528 MGI:3513221 NCBI chr10:67,325,101...67,371,588
Ensembl chr10:67,325,347...67,369,668
JBrowse link
X chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 IEA
ISO
GO_REF:0000107
(MGI:3757893|PMID:17784788)
Ensembl
RGD
PMID:17784788 GO_REF:0000107, MGI:3757893 NCBI chr 7:3,124,953...3,132,533
Ensembl chr 7:3,124,954...3,132,457
JBrowse link
G Pcgf3 polycomb group ring finger 3 colocalizes_with ISO (MGI:5908473|PMID:28596365) RGD PMID:28596365 MGI:5908473 NCBI chr14:2,247,805...2,297,155
Ensembl chr14:2,247,808...2,297,155
JBrowse link
G Pcgf5 polycomb group ring finger 5 colocalizes_with ISO (MGI:5908473|PMID:28596365) RGD PMID:28596365 MGI:5908473 NCBI chr 1:254,974,688...255,090,925
Ensembl chr 1:254,974,789...255,086,207
JBrowse link
G Sin3b SIN3 transcription regulator family member B ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr16:18,842,456...18,860,086
Ensembl chr16:18,842,456...18,860,086
JBrowse link
XY body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atr ATR serine/threonine kinase ISO (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr 8:103,673,578...103,770,886
Ensembl chr 8:103,673,411...103,770,947
JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 IDA RGD PMID:16343737 RGD:1643531 NCBI chr 8:6,014,014...6,036,668
Ensembl chr 8:6,013,207...6,034,142
JBrowse link
G Daxx death-domain associated protein IDA RGD PMID:15349788 RGD:9587797 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Dmrtc2 DMRT-like family C2 ISO (MGI:3710435|PMID:17447844) RGD PMID:17447844 MGI:3710435 NCBI chr 1:81,734,256...81,741,419
Ensembl chr 1:81,736,335...81,741,345
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO (MGI:4820908|PMID:20577743) RGD PMID:20577743 MGI:4820908 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 ISO (MGI:5465053|PMID:22699483) RGD PMID:22699483 MGI:5465053 NCBI chr15:42,500,929...42,519,019
Ensembl chr15:42,500,929...42,518,855
JBrowse link
G Fam9c family with sequence similarity 9, member C ISO (MGI:5050596|PMID:21451147), (MGI:5509253|PMID:23810942) RGD PMID:21451147, PMID:23810942 MGI:5050596, MGI:5509253 NCBI chr  X:157,571,817...157,591,543 JBrowse link
G H2ax H2A.X variant histone ISO (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:3828184|PMID:19074312), (MGI:4820908|PMID:20577743), (MGI:5049827|PMID:21539824), (MGI:5465053|PMID:22699483), (MGI:5470363|PMID:23133398), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5645866|PMID:25634095), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182) RGD PMID:18070917, PMID:18316482, PMID:19074312, PMID:20577743, PMID:21539824, PMID:22699483, PMID:22854038, PMID:23133398, PMID:23810942, PMID:25634095, PMID:25675407, PMID:26358182 MGI:3771519, MGI:3774244, MGI:3828184, MGI:4820908, MGI:5049827, MGI:5465053, MGI:5470363, MGI:5504589, MGI:5509253, MGI:5645866, MGI:5661094, MGI:5697228 NCBI chr 8:48,665,652...48,666,981
Ensembl chr 8:48,665,652...48,666,981
JBrowse link
G LOC100910636 zinc finger CW-type PWWP domain protein 1-like ISO (MGI:6358520|PMID:31453335), (MGI:6467709|PMID:32744506) RGD PMID:31453335, PMID:32744506 MGI:6358520, MGI:6467709 NCBI chr12:21,690,074...21,720,186
Ensembl chr12:21,689,095...21,720,094
JBrowse link
G Mael maelstrom spermatogenic transposon silencer NOT ISO (MGI:3655410|PMID:16787967)
(MGI:3813746|PMID:18694567)
RGD PMID:16787967, PMID:18694567 MGI:3655410, MGI:3813746 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Pbx4 PBX homeobox 4 ISO (MGI:2135407|PMID:11335119) RGD PMID:11335119 MGI:2135407 NCBI chr16:21,303,117...21,338,771
Ensembl chr16:21,303,837...21,338,771
JBrowse link
G Plk4 polo-like kinase 4 ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr 2:127,686,911...127,705,518
Ensembl chr 2:127,686,925...127,705,518
JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase ISO (MGI:3055251|PMID:15383616) RGD PMID:15383616 MGI:3055251 NCBI chr 4:144,537,329...144,620,606
Ensembl chr 4:144,536,729...144,620,731
JBrowse link
G Scml2 Scm polycomb group protein like 2 ISO (MGI:5645866|PMID:25634095) RGD PMID:25634095 MGI:5645866 NCBI chr  X:35,305,235...35,431,271
Ensembl chr  X:35,305,236...35,431,164
JBrowse link
G Sin3b SIN3 transcription regulator family member B ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr16:18,842,456...18,860,086
Ensembl chr16:18,842,456...18,860,086
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Sumo1 small ubiquitin-like modifier 1 IDA
ISO
(MGI:5645866|PMID:25634095) RGD PMID:25634095, PMID:15349788 MGI:5645866, RGD:9587797 NCBI chr 9:66,453,428...66,483,614
Ensembl chr 9:66,453,438...66,483,614
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A ISO (MGI:3055251|PMID:15383616) RGD PMID:15383616 MGI:3055251 NCBI chr  X:123,486,988...123,497,726
Ensembl chr  X:123,486,989...123,497,726
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B ISO (MGI:3055251|PMID:15383616) RGD PMID:15383616 MGI:3055251 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Usp7 ubiquitin specific peptidase 7 ISO (MGI:5645866|PMID:25634095) RGD PMID:25634095 MGI:5645866 NCBI chr10:6,930,462...7,019,910
Ensembl chr10:6,975,244...7,018,930
JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 ISO (MGI:6358520|PMID:31453335), (MGI:6467709|PMID:32744506) RGD PMID:31453335, PMID:32744506 MGI:6358520, MGI:6467709 NCBI chr12:21,418,874...21,450,617 JBrowse link
Y chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 IEA
ISO
GO_REF:0000107
(MGI:3757893|PMID:17784788)
Ensembl
RGD
PMID:17784788 GO_REF:0000107, MGI:3757893 NCBI chr 7:3,124,953...3,132,533
Ensembl chr 7:3,124,954...3,132,457
JBrowse link
G Sin3b SIN3 transcription regulator family member B ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr16:18,842,456...18,860,086
Ensembl chr16:18,842,456...18,860,086
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      intracellular anatomical structure 14638
        intracellular non-membrane-bounded organelle 5177
          chromosome 1421
            sex chromosome 41
              W chromosome 0
              X chromosome + 11
              XY body 22
              Y chromosome 2
              Z chromosome 0
              active sex chromosome + 0
              dosage compensation complex + 0
              inactive sex chromosome + 1
              sex chromatin + 6
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      organelle 13274
        non-membrane-bounded organelle 5194
          intracellular non-membrane-bounded organelle 5177
            chromosome 1421
              sex chromosome 41
                W chromosome 0
                X chromosome + 11
                XY body 22
                Y chromosome 2
                Z chromosome 0
                active sex chromosome + 0
                dosage compensation complex + 0
                inactive sex chromosome + 1
                sex chromatin + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.