ONTOLOGY REPORT - ANNOTATIONS
Term: synaptonemal complex
Accession: GO:0000795
browse the term
Definition: A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element.
Synonyms: alt_id: GO:0005716
xref: Wikipedia:Synaptonemal_complex
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Ccnb1ip1
cyclin B1 interacting protein 1
colocalizes_with
ISO
(MGI:5545848|PMID:24390283)
RGD
PMID:24390283
MGI:5545848
NCBI chr15:27,720,220...27,736,528
Ensembl chr15:27,720,223...27,733,785
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Fkbp6
FKBP prolyl isomerase family member 6
ISS ISO
GO_REF:0000024 (MGI:2662793|PMID:12764197)
UniProt RGD
PMID:12764197
GO_REF:0000024 MGI:2662793
NCBI chr12:24,365,941...24,438,088
Ensembl chr12:24,367,199...24,438,019
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Hormad1
HORMA domain containing 1
ISO
(MGI:5504589|PMID:22854038)
RGD
PMID:22854038
MGI:5504589
NCBI chr 2:197,681,820...197,720,197
Ensembl chr 2:197,682,000...197,719,254
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Hormad2
HORMA domain containing 2
ISO
(MGI:5504589|PMID:22854038)
RGD
PMID:22854038
MGI:5504589
NCBI chr14:84,576,856...84,662,237
Ensembl chr14:84,576,825...84,662,222
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Hspa2
heat shock protein family A (Hsp70) member 2
ISO
(MGI:82564|PMID:8622925)
RGD
PMID:8622925
MGI:82564
NCBI chr 6:99,433,575...99,436,288
Ensembl chr 6:99,433,550...99,436,289
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Incenp
inner centromere protein
ISO
(MGI:2653770|PMID:12584241)
RGD
PMID:12584241
MGI:2653770
NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
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Lig3
DNA ligase 3
ISO
(MGI:85057|PMID:9001252)
RGD
PMID:9001252
MGI:85057
NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
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LOC100366231
X-linked lymphocyte-regulated 5C-like
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:147,060,791...147,076,946
Ensembl chr 1:146,976,975...146,989,858 Ensembl chr 1:146,976,975...146,989,858
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LOC100911002
synaptonemal complex protein 3-like
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:146,972,526...146,989,856
Ensembl chr 1:146,976,975...146,989,858 Ensembl chr 1:146,976,975...146,989,858
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LOC100911047
X-linked lymphocyte-regulated protein 3A-like
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:147,000,037...147,012,436
Ensembl chr 1:147,003,850...147,011,657
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LOC103690322
X-linked lymphocyte-regulated protein 3A-like
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr X:153,072,908...153,080,915
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Mlh1
mutL homolog 1
IDA ISO IEA
PMID:16968740 (MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499) GO_REF:0000107
RGD Ensembl
PMID:15467367 PMID:16260499 , PMID:16968740
GO_REF:0000107 MGI:3056006 MGI:3612193 , RGD:8554354
NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
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Mlh3
mutL homolog 3
ISO
(MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)
RGD
PMID:15467367 PMID:16260499
MGI:3056006 MGI:3612193
NCBI chr 6:109,059,386...109,095,876
Ensembl chr 6:109,059,341...109,095,557
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Msh4
mutS homolog 4
ISO IBA
(MGI:1858570|PMID:10809667), (MGI:3612193|PMID:16260499) PMID:21873635
RGD
PMID:10809667 PMID:16260499 , PMID:21873635
MGI:1858570 MGI:3612193 , RGD:13792537
NCBI chr 2:260,057,708...260,108,897
Ensembl chr 2:260,057,855...260,108,897
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Msh5
mutS homolog 5
ISO
(MGI:3612193|PMID:16260499)
RGD
PMID:16260499
MGI:3612193
NCBI chr20:5,020,690...5,037,125
Ensembl chr20:5,020,667...5,037,088
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P3h4
prolyl 3-hydroxylase family member 4
IDA
RGD
PMID:1363622
RGD:633987
NCBI chr10:88,318,231...88,325,326
Ensembl chr10:88,318,817...88,325,326
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Plk1
polo-like kinase 1
IEA ISO
GO_REF:0000107 (MGI:5504589|PMID:22854038)
Ensembl RGD
PMID:22854038
GO_REF:0000107 MGI:5504589
NCBI chr 1:192,115,990...192,125,969
Ensembl chr 1:192,115,966...192,125,989
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Rad21
RAD21 cohesin complex component
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:91,511,755...91,538,673
Ensembl chr 7:91,511,756...91,538,673
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Rad21l1
RAD21 cohesin complex component like 1
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:147,163,335...147,191,008
Ensembl chr 3:147,163,838...147,188,929
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Rec8
REC8 meiotic recombination protein
ISO IBA
(MGI:2667549|PMID:12759374) PMID:21873635
RGD
PMID:12759374 , PMID:21873635
MGI:2667549 , RGD:13792537
NCBI chr15:34,296,922...34,304,387
Ensembl chr15:34,296,922...34,304,552
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RGD1559891
similar to synaptonemal complex protein 3
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:201,901,213...201,903,582
Ensembl chr 1:201,901,342...201,902,031
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Rnf212
ring finger protein 212
colocalizes_with
IBA ISO
PMID:21873635 (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283)
RGD
PMID:23396135 PMID:24390283 , PMID:21873635
MGI:5487470 MGI:5545848 , RGD:13792537
NCBI chr14:1,959,148...1,998,077
Ensembl chr14:1,959,610...1,998,102
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Smc1b
structural maintenance of chromosomes 1B
ISO
(MGI:2150452|PMID:11564881), (MGI:3664716|PMID:16968740)
RGD
PMID:11564881 PMID:16968740
MGI:2150452 MGI:3664716
NCBI chr 7:125,966,480...126,028,287
Ensembl chr 7:125,966,480...126,028,279
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Stag3
stromal antigen 3
TAS ISO
(MGI:1354041|PMID:10698974)
RGD
PMID:10698974 , PMID:11599053
MGI:1354041 , RGD:727325
NCBI chr12:19,599,741...19,630,775
Ensembl chr12:19,599,834...19,630,780
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Syce1
synaptonemal complex central element protein 1
IDA IBA
PMID:16968740 PMID:21873635
MGI GO_Central
PMID:16968740 , PMID:21873635
RGD:8554354 , RGD:13792537
NCBI chr 1:213,523,638...213,534,641
Ensembl chr 1:213,523,639...213,534,641
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Syce1l
synaptonemal complex central element protein 1-like
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:45,946,422...45,956,822
Ensembl chr19:45,946,236...45,956,844
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Sycp1
synaptonemal complex protein 1
IDA ISO
(MGI:2664436|PMID:12815066), (MGI:3579731|PMID:15937223), (MGI:3664716|PMID:16968740), (MGI:3719060|PMID:17696610), (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:4457793|PMID:20551173), (MGI:5314623|PMID:22011390), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657)
RGD
PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 PMID:18316482 PMID:20551173 PMID:22011390 PMID:25675407 PMID:26358182 PMID:26490168 PMID:27473657 PMID:27760146 PMID:27856912 , PMID:8660935
MGI:2664436 MGI:3579731 MGI:3664716 MGI:3719060 MGI:3771519 MGI:3774244 MGI:4457793 MGI:5314623 MGI:5661094 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447 , RGD:9686370
NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
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Sycp2
synaptonemal complex protein 2
IDA ISO
(MGI:3774244|PMID:18316482), (MGI:5692009|PMID:26362258)
RGD
PMID:18316482 PMID:26362258 , PMID:9592139
MGI:3774244 MGI:5692009 , RGD:69387
NCBI chr 3:173,884,559...173,948,304
Ensembl chr 3:173,884,287...173,947,018
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Sycp3
synaptonemal complex protein 3
ISO IBA
(PMID:9774970) PMID:21873635 (MGI:2664436|PMID:12815066), (MGI:3027482|PMID:14736746), (MGI:3528534|PMID:15657431), (MGI:3615835|PMID:16428451), (MGI:3664716|PMID:16968740), (MGI:3695528|PMID:17141210), (MGI:3719060|PMID:17696610), (MGI:3770581|PMID:17912366), (MGI:3771519|PMID:18070917), (MGI:4457793|PMID:20551173), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657)
RGD
PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 PMID:16968740 PMID:17141210 PMID:17696610 PMID:17912366 PMID:18070917 PMID:20551173 PMID:22854038 PMID:23810942 PMID:26358182 PMID:26490168 PMID:27473657 PMID:27760146 PMID:27856912 , PMID:21873635
MGI:2664436 MGI:3027482 MGI:3528534 MGI:3615835 MGI:3664716 MGI:3695528 MGI:3719060 MGI:3770581 MGI:3771519 MGI:4457793 MGI:5504589 MGI:5509253 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447 , RGD:13792537
NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
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Syn1
synapsin I
ISO
(MGI:3027482|PMID:14736746)
RGD
PMID:14736746
MGI:3027482
NCBI chr X:1,321,315...1,379,202
Ensembl chr X:1,321,315...1,379,198
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Tex11
testis expressed 11
colocalizes_with
ISO
(MGI:3797180|PMID:18369460)
RGD
PMID:18369460
MGI:3797180
NCBI chr X:70,670,212...70,946,621
Ensembl chr X:70,670,322...70,946,565
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Tex12
testis expressed 12
ISO
(MGI:3664716|PMID:16968740)
RGD
PMID:16968740
MGI:3664716
NCBI chr 8:54,991,501...54,999,454
Ensembl chr 8:54,992,841...54,994,871
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Wapl
WAPL cohesin release factor
ISO
(MGI:3525912|PMID:15620708)
RGD
PMID:15620708
MGI:3525912
NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
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Xlr3a
X-linked lymphocyte-regulated 3A
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:147,033,269...147,050,622
Ensembl chr 1:147,034,668...147,046,809
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Xlr4a
X-linked lymphocyte-regulated 4A
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:153,072,965...153,081,324
Ensembl chr X:153,072,908...153,080,915
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Incenp
inner centromere protein
ISO
(MGI:2653770|PMID:12584241)
RGD
PMID:12584241
MGI:2653770
NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
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Six6os1
Six6 opposite strand transcript 1
ISO IBA
(MGI:5822939|PMID:27796301) PMID:21873635
RGD
PMID:27796301 , PMID:21873635
MGI:5822939 , RGD:13792537
NCBI chr 6:95,761,718...95,797,314
Ensembl chr 6:95,762,332...95,796,502
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Syce1
synaptonemal complex central element protein 1
ISO
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254)
RGD
PMID:15944401 PMID:22164254
MGI:3581466 MGI:5315075
NCBI chr 1:213,523,638...213,534,641
Ensembl chr 1:213,523,639...213,534,641
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Syce2
synaptonemal complex central element protein 2
ISO IBA
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038) PMID:21873635
RGD
PMID:15944401 PMID:22164254 PMID:22854038 , PMID:21873635
MGI:3581466 MGI:5315075 MGI:5504589 , RGD:13792537
NCBI chr19:25,982,003...26,002,399
Ensembl chr19:25,983,169...26,001,317
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Syce3
synaptonemal complex central element protein 3
ISO IBA
(MGI:5008660|PMID:21637789), (MGI:5315075|PMID:22164254) PMID:21873635
RGD
PMID:21637789 PMID:22164254 , PMID:21873635
MGI:5008660 MGI:5315075 , RGD:13792537
NCBI chr 7:130,360,511...130,386,673
Ensembl chr 7:130,360,517...130,368,819
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Sycp1
synaptonemal complex protein 1
IEA IBA ISO
GO_REF:0000107 PMID:21873635 (MGI:2653770|PMID:12584241), (MGI:5470363|PMID:23133398)
Ensembl RGD
PMID:12584241 PMID:23133398 , PMID:21873635
GO_REF:0000107 MGI:2653770 MGI:5470363 , RGD:13792537
NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
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Tex11
testis expressed 11
ISO IBA
(MGI:3774244|PMID:18316482) PMID:21873635
RGD
PMID:18316482 , PMID:21873635
MGI:3774244 , RGD:13792537
NCBI chr X:70,670,212...70,946,621
Ensembl chr X:70,670,322...70,946,565
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Tex12
testis expressed 12
IBA ISO
PMID:21873635 (MGI:3664716|PMID:16968740), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
RGD
PMID:16968740 PMID:22164254 PMID:22854038 , PMID:21873635
MGI:3664716 MGI:5315075 MGI:5504589 , RGD:13792537
NCBI chr 8:54,991,501...54,999,454
Ensembl chr 8:54,992,841...54,994,871
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AABR07027258.1
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr17:21,430,337...21,484,456
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Blm
BLM RecQ like helicase
ISO
(PMID:10728666)
RGD
PMID:10728666
NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
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Brca1
BRCA1, DNA repair associated
IEA ISO
GO_REF:0000107 (PMID:9774970)
Ensembl RGD
PMID:9774970
GO_REF:0000107
NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
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Brca2
BRCA2, DNA repair associated
IEA ISO
GO_REF:0000107 (PMID:9774970)
Ensembl RGD
PMID:9774970
GO_REF:0000107
NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
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Incenp
inner centromere protein
ISO
(MGI:3839184|PMID:19283064)
RGD
PMID:19283064
MGI:3839184
NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
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Kash5
KASH domain containing 5
ISO IBA
(MGI:5515826|PMID:24062341) PMID:21873635
RGD
PMID:24062341 , PMID:21873635
MGI:5515826 , RGD:13792537
NCBI chr 1:101,180,497...101,203,048
Ensembl chr 1:101,180,657...101,198,801
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Mei4
meiotic double-stranded break formation protein 4
ISO IBA
(MGI:4457793|PMID:20551173) PMID:21873635
RGD
PMID:20551173 , PMID:21873635
MGI:4457793 , RGD:13792537
NCBI chr 8:89,369,417...89,556,942
Ensembl chr 8:89,369,417...89,556,942
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Rad21l1
RAD21 cohesin complex component like 1
ISO
(MGI:5288570|PMID:21743440)
RGD
PMID:21743440
MGI:5288570
NCBI chr 3:147,163,335...147,191,008
Ensembl chr 3:147,163,838...147,188,929
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Rad51
RAD51 recombinase
ISO
(PMID:9774970) (MGI:3813746|PMID:18694567), (MGI:5288570|PMID:21743440)
RGD
PMID:9774970 PMID:18694567 PMID:21743440
MGI:3813746 MGI:5288570
NCBI chr 3:110,918,240...110,942,920
Ensembl chr 3:110,918,243...110,942,917
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Rec8
REC8 meiotic recombination protein
ISO
(MGI:3578071|PMID:15870106)
RGD
PMID:15870106
MGI:3578071
NCBI chr15:34,296,922...34,304,387
Ensembl chr15:34,296,922...34,304,552
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Rpa1
replication protein A1
ISO
(MGI:5288570|PMID:21743440), (MGI:5428050|PMID:22711701)
RGD
PMID:21743440 PMID:22711701
MGI:5288570 MGI:5428050
NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
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Smc1b
structural maintenance of chromosomes 1B
ISO
(MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701)
RGD
PMID:15870106 PMID:22711701
MGI:3578071 MGI:5428050
NCBI chr 7:125,966,480...126,028,287
Ensembl chr 7:125,966,480...126,028,279
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Smc3
structural maintenance of chromosomes 3
IEA ISO
GO_REF:0000107 (MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701)
Ensembl RGD
PMID:15870106 PMID:22711701
GO_REF:0000107 MGI:3578071 MGI:5428050
NCBI chr 1:274,310,120...274,352,856
Ensembl chr 1:274,309,758...274,352,854
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Stag3
stromal antigen 3
ISO
(MGI:5428050|PMID:22711701)
RGD
PMID:22711701
MGI:5428050
NCBI chr12:19,599,741...19,630,775
Ensembl chr12:19,599,834...19,630,780
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Sycp2
synaptonemal complex protein 2
IDA IBA ISO
PMID:9933407 PMID:21873635 (MGI:3794139|PMID:18283110), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398)
RGD
PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 , PMID:9933407 , PMID:21873635
MGI:3794139 MGI:5314623 MGI:5428050 MGI:5470363 , RGD:11035335 , RGD:13792537
NCBI chr 3:173,884,559...173,948,304
Ensembl chr 3:173,884,287...173,947,018
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Sycp2l
synaptonemal complex protein 2-like
ISO
(MGI:5692009|PMID:26362258)
RGD
PMID:26362258
MGI:5692009
NCBI chr17:21,430,470...21,486,091
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Sycp3
synaptonemal complex protein 3
IDA ISO
PMID:9933407 (MGI:1352918|PMID:10678170), (MGI:3839184|PMID:19283064), (MGI:4452449|PMID:18802469), (MGI:5049827|PMID:21539824), (MGI:5288570|PMID:21743440), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398), (MGI:5477835|PMID:23555294), (MGI:5504589|PMID:22854038), (MGI:5609844|PMID:25533956), (MGI:5661094|PMID:25675407)
RGD
PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 PMID:22011390 PMID:22711701 PMID:22854038 PMID:23133398 PMID:23555294 PMID:25533956 PMID:25675407 , PMID:9933407
MGI:1352918 MGI:3839184 MGI:4452449 MGI:5049827 MGI:5288570 MGI:5314623 MGI:5428050 MGI:5470363 MGI:5477835 MGI:5504589 MGI:5609844 MGI:5661094 , RGD:11035335
NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
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Stag3
stromal antigen 3
ISO
(MGI:3578071|PMID:15870106)
RGD
PMID:15870106
MGI:3578071
NCBI chr12:19,599,741...19,630,775
Ensembl chr12:19,599,834...19,630,780
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Sycp1
synaptonemal complex protein 1
IDA IBA IEA ISO
PMID:21873635 GO_REF:0000107 (MGI:3578071|PMID:15870106), (MGI:3794139|PMID:18283110), (MGI:5049827|PMID:21539824), (MGI:5428050|PMID:22711701)
Ensembl RGD
PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 , PMID:1464329 , PMID:21873635
GO_REF:0000107 MGI:3578071 MGI:3794139 MGI:5049827 MGI:5428050 , RGD:729937 , RGD:13792537
NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
G
Sycp3
synaptonemal complex protein 3
ISO
(MGI:3578071|PMID:15870106)
RGD
PMID:15870106
MGI:3578071
NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all