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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal complex
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Accession:GO:0000795 term browser browse the term
Definition:A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element.
Synonyms:alt_id: GO:0005716
 xref: Wikipedia:Synaptonemal_complex
 never_in_taxon: NCBITaxon:4896 ! Schizosaccharomyces pombe


show annotations for term's descendants           Sort by:
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 3830403N18Rikl RIKEN cDNA 3830403N18 gene like located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:133,561,127...133,574,507
Ensembl chr  X:133,556,226...133,574,454 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Fam9b family with sequence similarity 9, member B located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:133,519,542...133,531,868
Ensembl chr  X:133,519,185...133,531,913 		JBrowse link
G Fam9c family with sequence similarity 9, member C located_in
is_active_in		 IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:146,236,386...146,256,079
Ensembl chr  X:146,236,934...146,256,051 		JBrowse link
G Fam9cl1 family with sequence similarity 9, member C like 1 located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:146,218,106...146,237,824
Ensembl chr  X:146,218,018...146,236,058 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:2662793|PMID:12764197)		 UniProt
Ensembl
RGD		 PMID:12764197 GO_REF:0000024 GO_REF:0000107 MGI:2662793 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22854038) RGD PMID:22854038 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (PMID:22854038) RGD PMID:22854038 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (PMID:8622925) RGD PMID:8622925 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) RGD PMID:12584241 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,935,437...150,947,126
Ensembl chr  X:150,935,511...150,946,614 		JBrowse link
G LOC134484028 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC134484032 X-linked lymphocyte-regulated protein 5C-like located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118
G Mlh1 mutL homolog 1 located_in IEA
ISO
IDA		 GO_REF:0000107
(PMID:15467367), (PMID:16260499)
PMID:16968740		 Ensembl
RGD		 PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107, RGD:8554354 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:15467367), (PMID:16260499) RGD PMID:15467367 PMID:16260499 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) RGD PMID:10809667 PMID:16260499 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) RGD PMID:16260499 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:12759374) RGD PMID:12759374 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rnf212 ring finger protein 212 located_in
is_active_in		 ISO
IBA		 (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283)
GO_REF:0000033		 RGD
GO_Central		 PMID:23396135 PMID:24390283 GO_REF:0000033 MGI:5487470 MGI:5545848 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831 		JBrowse link
G Rnf212b ring finger protein 212B located_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:28,274,629...28,321,093
Ensembl chr15:28,244,083...28,321,347 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:11564881), (PMID:16968740) RGD PMID:11564881 PMID:16968740 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in TAS
ISO		 (PMID:10698974) RGD PMID:10698974 PMID:11599053 RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in		 IDA
IBA		 PMID:16968740
GO_REF:0000033		 GO_Central PMID:16968740 GO_REF:0000033, RGD:8554354 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
IEA
ISO		 GO_REF:0000002
(MGI:3579731|PMID:15937223), (PMID:12815066), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)		 InterPro
RGD		 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... GO_REF:0000002 MGI:3579731, RGD:9686370 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
ISO		 (PMID:18316482), (PMID:26362258) RGD PMID:18316482 PMID:26362258 PMID:9592139 RGD:69387 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in		 ISO
IBA
IEA		 (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... GO_REF:0000033 GO_REF:0000118 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Sycp3l1 synaptonemal complex protein 3 like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630 		JBrowse link
G Sycp3l2 synaptonemal complex protein 3 like 2 located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:133,857,772...133,871,791
Ensembl chr  X:133,857,773...133,871,714 		JBrowse link
G Syn1 synapsin I located_in ISO (PMID:14736746) RGD PMID:14736746 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (MGI:3797180|PMID:18369460) RGD PMID:18369460 MGI:3797180 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) RGD PMID:16968740 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,967,914...150,978,992
Ensembl chr  X:150,967,919...150,978,992 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786 		JBrowse link
G Xlr5c X-linked lymphocyte-regulated 5C located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:150,990,742...151,008,064
Ensembl chr  X:150,990,735...151,003,268 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Farsa phenylalanyl-tRNA synthetase subunit alpha is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:23,291,409...23,300,985
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) RGD PMID:12584241 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 located_in
is_active_in		 ISO
IBA		 (MGI:5822939|PMID:27796301)
GO_REF:0000033		 RGD
GO_Central		 PMID:27796301 GO_REF:0000033 MGI:5822939 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254) RGD PMID:15944401 PMID:22164254 MGI:3581466 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(MGI:3581466|PMID:15944401), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:15944401 PMID:22164254 PMID:22854038 GO_REF:0000033 MGI:3581466 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(MGI:5008660|PMID:21637789), (PMID:22164254)		 GO_Central
RGD		 PMID:21637789 PMID:22164254 GO_REF:0000033 MGI:5008660 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:12584241), (PMID:23133398)
GO_REF:0000033
GO_REF:0000118		 Ensembl
RGD
GO_Central
TreeGrafter		 PMID:12584241 PMID:23133398 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Tex11 testis expressed 11 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(MGI:3664716|PMID:16968740), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:16968740 PMID:22164254 PMID:22854038 GO_REF:0000033 MGI:3664716 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:30718482) RGD PMID:30718482 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) RGD PMID:19283064 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Kash5 KASH domain containing 5 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:24062341)		 GO_Central
RGD		 PMID:24062341 GO_REF:0000033 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:20551173)		 GO_Central
RGD		 PMID:20551173 GO_REF:0000033 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:21743440) RGD PMID:21743440 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:9774970)
(PMID:18694567), (PMID:21743440)		 RGD PMID:9774970 PMID:18694567 PMID:21743440 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:15870106), (PMID:32328639) RGD PMID:15870106 PMID:32328639 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) RGD PMID:21743440 PMID:22711701 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:15870106), (PMID:22711701) RGD PMID:15870106 PMID:22711701 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:15870106), (PMID:22711701), (PMID:32328639)		 Ensembl
RGD		 PMID:15870106 PMID:22711701 PMID:32328639 GO_REF:0000107 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22711701) RGD PMID:22711701 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 IDA
ISO
IEA
IBA		 PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:11035335 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26362258)		 GO_Central
RGD		 PMID:26362258 GO_REF:0000033 NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO		 PMID:9933407
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... MGI:1352918, RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IDA
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
(PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701)		 Ensembl
GO_Central
TreeGrafter
RGD		 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:729937 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      synaptonemal structure 54
        synaptonemal complex 54
          central element 9
          lateral element 18
          transverse filament 3
Path 2
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      organelle 14344
        intracellular organelle 13898
          intracellular membrane-bounded organelle 12331
            nucleus 7726
              nuclear lumen 4131
                nuclear chromosome 237
                  condensed nuclear chromosome 93
                    synaptonemal structure 54
                      synaptonemal complex 54
                        central element 9
                        lateral element 18
                        transverse filament 3
paths to the root