ONTOLOGY REPORT - ANNOTATIONS
Term: synaptonemal complex
Accession: GO:0000795
browse the term
Definition: A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element.
Synonyms: alt_id: GO:0005716
xref: Wikipedia:Synaptonemal_complex
never_in_taxon: NCBITaxon:4896 ! Schizosaccharomyces pombe
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Ccnb1ip1
cyclin B1 interacting protein 1
colocalizes_with
ISO
(MGI:5545848|PMID:24390283)
RGD
PMID:24390283
MGI:5545848
NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
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Fkbp6
FKBP prolyl isomerase family member 6
located_in
ISS ISO
GO_REF:0000024 (MGI:2662793|PMID:12764197)
UniProt RGD
PMID:12764197
GO_REF:0000024 MGI:2662793
NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350
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Hormad1
HORMA domain containing 1
located_in
ISO
(MGI:5504589|PMID:22854038)
RGD
PMID:22854038
MGI:5504589
NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383
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Hormad2
HORMA domain containing 2
located_in
ISO
(MGI:5504589|PMID:22854038)
RGD
PMID:22854038
MGI:5504589
NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910
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Hspa2
heat shock protein family A (Hsp70) member 2
located_in
ISO
(MGI:82564|PMID:8622925)
RGD
PMID:8622925
MGI:82564
NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287
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Incenp
inner centromere protein
located_in
ISO
(MGI:2653770|PMID:12584241)
RGD
PMID:12584241
MGI:2653770
NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
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Lig3
DNA ligase 3
located_in
ISO
(MGI:85057|PMID:9001252)
RGD
PMID:9001252
MGI:85057
NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
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LOC100911002
synaptonemal complex protein 3-like
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:150,990,742...151,008,064
Ensembl chr X:150,990,735...151,003,268
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LOC100911047
X-linked lymphocyte-regulated protein 3A-like
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:150,935,437...150,947,126
Ensembl chr X:150,935,511...150,946,614
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Mlh1
mutL homolog 1
located_in
IEA IDA ISO
GO_REF:0000107 PMID:16968740 (MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)
Ensembl RGD
PMID:15467367 PMID:16260499 PMID:16968740
GO_REF:0000107 MGI:3056006 MGI:3612193 , RGD:8554354
NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
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Mlh3
mutL homolog 3
located_in
ISO
(MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)
RGD
PMID:15467367 PMID:16260499
MGI:3056006 MGI:3612193
NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
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Msh4
mutS homolog 4
located_in
ISO
(MGI:1858570|PMID:10809667), (MGI:3612193|PMID:16260499)
RGD
PMID:10809667 PMID:16260499
MGI:1858570 MGI:3612193
NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
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Msh5
mutS homolog 5
located_in
ISO
(MGI:3612193|PMID:16260499)
RGD
PMID:16260499
MGI:3612193
NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
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P3h4
prolyl 3-hydroxylase family member 4
IDA
RGD
PMID:1363622
RGD:633987
NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093
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Plk1
polo-like kinase 1
located_in
IEA ISO
GO_REF:0000107 (MGI:5504589|PMID:22854038)
Ensembl RGD
PMID:22854038
GO_REF:0000107 MGI:5504589
NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400
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Rec8
REC8 meiotic recombination protein
located_in
ISO
(MGI:2667549|PMID:12759374)
RGD
PMID:12759374
MGI:2667549
NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
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RGD1559891
similar to synaptonemal complex protein 3
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630
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Rnf212
ring finger protein 212
colocalizes_with is_active_in
ISO IBA
(MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283) PMID:21873635
RGD
PMID:23396135 PMID:24390283 PMID:21873635
MGI:5487470 MGI:5545848 , RGD:13792537
NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
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Rnf212b
ring finger protein 212B
located_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr15:28,274,629...28,321,093
Ensembl chr15:28,244,083...28,321,347
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Smc1a
structural maintenance of chromosomes 1A
IDA
MMO:0000679
RGD
PMID:10652260
RGD:1331378
NCBI chr X:21,103,323...21,148,053
Ensembl chr X:21,103,282...21,148,056
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Smc1b
structural maintenance of chromosomes 1B
located_in
ISO
(MGI:2150452|PMID:11564881), (MGI:3664716|PMID:16968740)
RGD
PMID:11564881 PMID:16968740
MGI:2150452 MGI:3664716
NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
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Smc3
structural maintenance of chromosomes 3
IDA
MMO:0000679
RGD
PMID:10652260
RGD:1331378
NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
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Stag3
stromal antigen 3
located_in
TAS ISO
(MGI:1354041|PMID:10698974)
RGD
PMID:10698974 PMID:11599053
MGI:1354041 , RGD:727325
NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
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Syce1
synaptonemal complex central element protein 1
located_in is_active_in
IDA IBA
PMID:16968740 PMID:21873635
MGI GO_Central
PMID:16968740 PMID:21873635
RGD:8554354 , RGD:13792537
NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
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Syce1l
synaptonemal complex central element protein 1-like
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526
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Sycp1
synaptonemal complex protein 1
located_in
IDA ISO IEA
(MGI:2664436|PMID:12815066), (MGI:3579731|PMID:15937223), (MGI:3664716|PMID:16968740), (MGI:3719060|PMID:17696610), (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:4457793|PMID:20551173), (MGI:5314623|PMID:22011390), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657), (MGI:6277530|PMID:30718482) GO_REF:0000002
RGD InterPro
PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 PMID:18316482 PMID:20551173 PMID:22011390 PMID:25675407 PMID:26358182 PMID:26490168 PMID:27473657 PMID:27760146 PMID:27856912 PMID:30718482 PMID:8660935 More...
GO_REF:0000002 MGI:2664436 MGI:3579731 MGI:3664716 MGI:3719060 MGI:3771519 MGI:3774244 MGI:4457793 MGI:5314623 MGI:5661094 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447 MGI:6277530 , RGD:9686370
NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
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Sycp2
synaptonemal complex protein 2
located_in
IDA ISO
(MGI:3774244|PMID:18316482), (MGI:5692009|PMID:26362258)
RGD
PMID:18316482 PMID:26362258 PMID:9592139
MGI:3774244 MGI:5692009 , RGD:69387
NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
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Sycp3
synaptonemal complex protein 3
is_active_in located_in
IBA ISO
PMID:21873635 (MGI:2664436|PMID:12815066), (MGI:3027482|PMID:14736746), (MGI:3528534|PMID:15657431), (MGI:3615835|PMID:16428451), (MGI:3664716|PMID:16968740), (MGI:3695528|PMID:17141210), (MGI:3719060|PMID:17696610), (MGI:3770581|PMID:17912366), (MGI:3771519|PMID:18070917), (MGI:4457793|PMID:20551173), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657), (MGI:6277530|PMID:30718482), (MGI:6390726|PMID:31839538) (PMID:9774970)
RGD
PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 PMID:16968740 PMID:17141210 PMID:17696610 PMID:17912366 PMID:18070917 PMID:20551173 PMID:22854038 PMID:23810942 PMID:26358182 PMID:26490168 PMID:27473657 PMID:27760146 PMID:27856912 PMID:30718482 PMID:31839538 PMID:21873635 More...
MGI:2664436 MGI:3027482 MGI:3528534 MGI:3615835 MGI:3664716 MGI:3695528 MGI:3719060 MGI:3770581 MGI:3771519 MGI:4457793 MGI:5504589 MGI:5509253 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447 MGI:6277530 MGI:6390726 , RGD:13792537
NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
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Syn1
synapsin I
located_in
ISO
(MGI:3027482|PMID:14736746)
RGD
PMID:14736746
MGI:3027482
NCBI chr X:1,172,208...1,227,400
Ensembl chr X:1,172,208...1,227,396
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Tex11
testis expressed 11
colocalizes_with
ISO
(MGI:3797180|PMID:18369460)
RGD
PMID:18369460
MGI:3797180
NCBI chr X:65,932,904...66,196,525
Ensembl chr X:65,932,988...66,196,187
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Tex12
testis expressed 12
located_in
ISO
(MGI:3664716|PMID:16968740)
RGD
PMID:16968740
MGI:3664716
NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
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Xlr3a
X-linked lymphocyte-regulated 3A
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:150,967,362...150,979,056
Ensembl chr X:150,967,919...150,978,992
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Xlr4a
X-linked lymphocyte-regulated 4A
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:150,916,647...150,925,201
Ensembl chr X:150,916,932...150,929,786
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Farsa
phenylalanyl-tRNA synthetase subunit alpha
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr19:23,291,409...23,300,985
Ensembl chr19:23,268,869...23,300,980
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Incenp
inner centromere protein
located_in
ISO
(MGI:2653770|PMID:12584241)
RGD
PMID:12584241
MGI:2653770
NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
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Six6os1
Six6 opposite strand transcript 1
located_in is_active_in
ISO IBA
(MGI:5822939|PMID:27796301) PMID:21873635
RGD
PMID:27796301 PMID:21873635
MGI:5822939 , RGD:13792537
NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148
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Syce1
synaptonemal complex central element protein 1
located_in
ISO
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254)
RGD
PMID:15944401 PMID:22164254
MGI:3581466 MGI:5315075
NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
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Syce2
synaptonemal complex central element protein 2
located_in is_active_in
ISO IBA
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038) PMID:21873635
RGD
PMID:15944401 PMID:22164254 PMID:22854038 PMID:21873635
MGI:3581466 MGI:5315075 MGI:5504589 , RGD:13792537
NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980
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Syce3
synaptonemal complex central element protein 3
located_in is_active_in
ISO IBA
(MGI:5008660|PMID:21637789), (MGI:5315075|PMID:22164254) PMID:21873635
RGD
PMID:21637789 PMID:22164254 PMID:21873635
MGI:5008660 MGI:5315075 , RGD:13792537
NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
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Sycp1
synaptonemal complex protein 1
located_in is_active_in
IEA IBA ISO
GO_REF:0000107 PMID:21873635 (MGI:2653770|PMID:12584241), (MGI:5470363|PMID:23133398)
Ensembl RGD
PMID:12584241 PMID:23133398 PMID:21873635
GO_REF:0000107 MGI:2653770 MGI:5470363 , RGD:13792537
NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
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Tex11
testis expressed 11
located_in is_active_in
ISO IBA
(MGI:3774244|PMID:18316482) PMID:21873635
RGD
PMID:18316482 PMID:21873635
MGI:3774244 , RGD:13792537
NCBI chr X:65,932,904...66,196,525
Ensembl chr X:65,932,988...66,196,187
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Tex12
testis expressed 12
located_in is_active_in
ISO IBA
(MGI:3664716|PMID:16968740), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038) PMID:21873635
RGD
PMID:16968740 PMID:22164254 PMID:22854038 PMID:21873635
MGI:3664716 MGI:5315075 MGI:5504589 , RGD:13792537
NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
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Blm
BLM RecQ like helicase
located_in
ISO
(PMID:10728666)
RGD
PMID:10728666
NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
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Brca1
BRCA1, DNA repair associated
located_in
ISO IEA
(PMID:9774970) GO_REF:0000107
RGD Ensembl
PMID:9774970
GO_REF:0000107
NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
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Brca2
BRCA2, DNA repair associated
located_in
ISO IEA
(PMID:9774970) GO_REF:0000107
RGD Ensembl
PMID:9774970
GO_REF:0000107
NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
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Dmc1
DNA meiotic recombinase 1
located_in
ISO
(MGI:6277530|PMID:30718482)
RGD
PMID:30718482
MGI:6277530
NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
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Incenp
inner centromere protein
located_in
ISO
(MGI:3839184|PMID:19283064)
RGD
PMID:19283064
MGI:3839184
NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
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Kash5
KASH domain containing 5
located_in is_active_in
ISO IBA
(MGI:5515826|PMID:24062341) PMID:21873635
RGD
PMID:24062341 PMID:21873635
MGI:5515826 , RGD:13792537
NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368
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Mei4
meiotic double-stranded break formation protein 4
located_in is_active_in
ISO IBA
(MGI:4457793|PMID:20551173) PMID:21873635
RGD
PMID:20551173 PMID:21873635
MGI:4457793 , RGD:13792537
NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649
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Rad21l1
RAD21 cohesin complex component like 1
located_in
ISO
(MGI:5288570|PMID:21743440)
RGD
PMID:21743440
MGI:5288570
NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
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Rad51
RAD51 recombinase
located_in
ISO
(MGI:3813746|PMID:18694567), (MGI:5288570|PMID:21743440) (PMID:9774970)
RGD
PMID:9774970 PMID:18694567 PMID:21743440
MGI:3813746 MGI:5288570
NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
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Rec8
REC8 meiotic recombination protein
located_in
ISO
(MGI:3578071|PMID:15870106), (MGI:6446339|PMID:32328639)
RGD
PMID:15870106 PMID:32328639
MGI:3578071 MGI:6446339
NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
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Rpa1
replication protein A1
located_in
ISO
(MGI:5288570|PMID:21743440), (MGI:5428050|PMID:22711701)
RGD
PMID:21743440 PMID:22711701
MGI:5288570 MGI:5428050
NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
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Smc1a
structural maintenance of chromosomes 1A
IDA
MMO:0000662
RGD
PMID:10652260
RGD:1331378
NCBI chr X:21,103,323...21,148,053
Ensembl chr X:21,103,282...21,148,056
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Smc1b
structural maintenance of chromosomes 1B
located_in
ISO
(MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701)
RGD
PMID:15870106 PMID:22711701
MGI:3578071 MGI:5428050
NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
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Smc3
structural maintenance of chromosomes 3
located_in
IEA ISO
GO_REF:0000107 (MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701), (MGI:6446339|PMID:32328639)
Ensembl RGD
PMID:15870106 PMID:22711701 PMID:32328639
GO_REF:0000107 MGI:3578071 MGI:5428050 MGI:6446339
NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
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Stag3
stromal antigen 3
located_in
ISO
(MGI:5428050|PMID:22711701)
RGD
PMID:22711701
MGI:5428050
NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
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Sycp2
synaptonemal complex protein 2
located_in
IDA ISO
PMID:9933407 (MGI:3794139|PMID:18283110), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398)
RGD
PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407
MGI:3794139 MGI:5314623 MGI:5428050 MGI:5470363 , RGD:11035335
NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
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Sycp2l
synaptonemal complex protein 2-like
located_in
ISO
(MGI:5692009|PMID:26362258)
RGD
PMID:26362258
MGI:5692009
NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306
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Sycp3
synaptonemal complex protein 3
located_in
IDA ISO
PMID:9933407 (MGI:1352918|PMID:10678170), (MGI:3839184|PMID:19283064), (MGI:4452449|PMID:18802469), (MGI:5049827|PMID:21539824), (MGI:5288570|PMID:21743440), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398), (MGI:5477835|PMID:23555294), (MGI:5504589|PMID:22854038), (MGI:5609844|PMID:25533956), (MGI:5661094|PMID:25675407)
RGD
PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 PMID:22011390 PMID:22711701 PMID:22854038 PMID:23133398 PMID:23555294 PMID:25533956 PMID:25675407 PMID:9933407 More...
MGI:1352918 MGI:3839184 MGI:4452449 MGI:5049827 MGI:5288570 MGI:5314623 MGI:5428050 MGI:5470363 MGI:5477835 MGI:5504589 MGI:5609844 MGI:5661094 , RGD:11035335
NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
G
Stag3
stromal antigen 3
located_in
ISO
(MGI:3578071|PMID:15870106)
RGD
PMID:15870106
MGI:3578071
NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
G
Sycp1
synaptonemal complex protein 1
is_active_in located_in
IDA IBA ISO IEA
PMID:21873635 (MGI:3578071|PMID:15870106), (MGI:3794139|PMID:18283110), (MGI:5049827|PMID:21539824), (MGI:5428050|PMID:22711701) GO_REF:0000107
RGD Ensembl
PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 PMID:21873635 More...
GO_REF:0000107 MGI:3578071 MGI:3794139 MGI:5049827 MGI:5428050 , RGD:729937 , RGD:13792537
NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
G
Sycp3
synaptonemal complex protein 3
located_in
ISO
(MGI:3578071|PMID:15870106)
RGD
PMID:15870106
MGI:3578071
NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all