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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


show annotations for term's descendants           Sort by:
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in ISO
IEA		 (PMID:1864459)
GO_REF:0000107		 RGD
Ensembl		 PMID:1864459 GO_REF:0000107 NCBI chr 1:262,152,722...262,260,504
Ensembl chr 1:252,147,386...252,255,124 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO
IEA		 (PMID:22863743)
GO_REF:0000107		 RGD
Ensembl		 PMID:22863743 GO_REF:0000107 NCBI chr 5:143,913,957...143,998,746
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) RGD PMID:20551173 PMID:26490168 NCBI chr10:86,917,693...86,978,012
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 RGD PMID:10938129 PMID:16339075 PMID:18039861 NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) RGD PMID:24891606 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Cdx2 caudal type homeo box 2 located_in ISO
IEA		 (PMID:15509711)
GO_REF:0000107		 RGD
Ensembl		 PMID:15509711 GO_REF:0000107 NCBI chr12:12,762,769...12,769,246
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO
ISS		 (PMID:9382850)
GO_REF:0000024		 RGD
UniProt		 PMID:9382850 GO_REF:0000024 NCBI chr 8:44,609,417...44,629,867
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO
IEA		 (PMID:11559747)
GO_REF:0000107		 RGD
Ensembl		 PMID:11559747 GO_REF:0000107 NCBI chr19:68,146,672...68,154,952
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:22711701), (PMID:27760146)		 GO_Central
Ensembl
RGD		 PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 7:113,005,278...113,047,854
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in IEA
ISO		 GO_REF:0000107
(PMID:16543361)		 Ensembl
RGD		 PMID:16543361 GO_REF:0000107 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G H1f6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) RGD PMID:18316482 NCBI chr17:41,855,216...41,855,960
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H2ax H2A.X variant histone located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) RGD PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr 8:53,568,718...53,570,072
Ensembl chr 8:44,671,786...44,673,239
Ensembl chr 4:44,671,786...44,673,239 		JBrowse link
G H3f4 H3.4 histone, cluster member located_in ISO (PMID:26388943) RGD PMID:26388943 NCBI chr10:44,240,282...44,240,842 JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO
IEA		 (PMID:22164254), (PMID:22530760)
GO_REF:0000107		 RGD
Ensembl		 PMID:22164254 PMID:22530760 GO_REF:0000107 NCBI chr 2:185,803,572...185,841,449
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Iho1 interactor of HORMAD1 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27723721)		 GO_Central
RGD		 PMID:27723721 GO_REF:0000033 NCBI chr 8:117,969,099...118,005,724
Ensembl chr 8:109,092,758...109,125,434 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO
IEA		 (PMID:16298999)
GO_REF:0000107		 RGD
Ensembl		 PMID:16298999 GO_REF:0000107 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:68,215,371...68,238,705
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12762840)		 HGNC-UCL
Ensembl
RGD		 PMID:12762840 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:15,612,638...15,695,113
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO
IEA		 (PMID:18316482), (PMID:23555294), (PMID:24891606)
GO_REF:0000107		 RGD
Ensembl		 PMID:18316482 PMID:23555294 PMID:24891606 GO_REF:0000107 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO
IEA		 (PMID:24891606)
GO_REF:0000107		 RGD
Ensembl		 PMID:24891606 GO_REF:0000107 NCBI chr 6:110,612,535...110,649,408
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IDA sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 8:19,900,211...19,961,906
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO
IEA		 (PMID:18316482), (PMID:22164254), (PMID:23555294)
GO_REF:0000107		 RGD
Ensembl		 PMID:18316482 PMID:22164254 PMID:23555294 GO_REF:0000107 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020 		JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373 		JBrowse link
G Ncapg non-SMC condensin I complex, subunit G located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr14:69,616,473...69,645,445
Ensembl chr14:65,404,163...65,432,902 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 located_in ISO (PMID:25474630) RGD PMID:25474630 NCBI chr 6:143,484,651...143,561,850
Ensembl chr 6:137,342,943...137,415,159 		JBrowse link
G Ncaph non-SMC condensin I complex, subunit H located_in ISO
IEA		 (PMID:25474630)
GO_REF:0000107		 RGD
Ensembl		 PMID:25474630 GO_REF:0000107 NCBI chr 3:134,825,271...134,852,502
Ensembl chr 3:114,371,941...114,399,180 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 located_in IEA
ISO		 GO_REF:0000107
(PMID:25474630)		 Ensembl
RGD		 PMID:25474630 GO_REF:0000107 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938 		JBrowse link
G Nek2 NIMA-related kinase 2 located_in ISO (PMID:15479717) RGD PMID:15479717 NCBI chr13:105,936,809...105,950,054
Ensembl chr13:103,405,819...103,419,051 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO
IEA		 (PMID:11342549)
GO_REF:0000107		 RGD
Ensembl		 PMID:11342549 GO_REF:0000107 NCBI chr13:31,946,119...31,955,950
Ensembl chr13:29,393,286...29,405,896 		JBrowse link
G Nol6 nucleolar protein 6 located_in ISO
IEA		 (PMID:11895476)
GO_REF:0000107		 RGD
Ensembl		 PMID:11895476 GO_REF:0000107 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336 		JBrowse link
G Psmc3ip PSMC3 interacting protein is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:86,524,546...86,527,764
Ensembl chr10:86,023,950...86,027,423 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO
IEA		 (PMID:24797475)
GO_REF:0000107		 RGD
Ensembl		 PMID:24797475 GO_REF:0000107 NCBI chr 7:85,177,715...85,204,657
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO
IEA		 (PMID:24797475)
GO_REF:0000107		 RGD
Ensembl		 PMID:24797475 GO_REF:0000107 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad50 RAD50 double strand break repair protein is_active_in IDA
IBA		 sex vesicles/chromatin of XY bivalent
GO_REF:0000033		 GO_Central
RGD		 PMID:10855503 GO_REF:0000033, RGD:2300257 NCBI chr10:38,310,147...38,362,100
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO
IEA		 (PMID:14668445), (PMID:18283110), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:23555294), (PMID:24891606), (PMID:26490168), (PMID:27760146)
GO_REF:0000107		 RGD
Ensembl		 PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000107 NCBI chr 3:126,554,210...126,578,888
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO
IEA		 (PMID:15014043)
GO_REF:0000107		 RGD
Ensembl		 PMID:15014043 GO_REF:0000107 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO
IEA		 (PMID:18084284), (PMID:22164254), (PMID:24797475)
GO_REF:0000107		 RGD
Ensembl		 PMID:18084284 PMID:22164254 PMID:24797475 GO_REF:0000107 NCBI chr15:33,079,818...33,087,283
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO
IEA		 (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254)
GO_REF:0000107		 RGD
Ensembl		 PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 GO_REF:0000107 NCBI chr10:60,647,185...60,698,279
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) RGD PMID:19465021 NCBI chr 5:14,516,303...14,517,936
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO
IEA		 (PMID:9578619)
GO_REF:0000107		 RGD
Ensembl		 PMID:9578619 GO_REF:0000107 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:29742103)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033		 RGD
Ensembl
InterPro
GO_Central		 PMID:29742103 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO
IEA		 (PMID:22164254)
GO_REF:0000107		 RGD
Ensembl		 PMID:22164254 GO_REF:0000107 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO
IEA		 (PMID:25474630)
GO_REF:0000107		 RGD
Ensembl		 PMID:25474630 GO_REF:0000107 NCBI chr 5:71,592,428...71,648,636
Ensembl chr 5:66,807,011...66,853,242 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO
IEA		 (PMID:25474630)
GO_REF:0000107		 RGD
Ensembl		 PMID:25474630 GO_REF:0000107 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO
IEA		 (PMID:22164254), (PMID:24797475)
GO_REF:0000107		 RGD
Ensembl		 PMID:22164254 PMID:24797475 GO_REF:0000107 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO
IEA		 (PMID:17452644)
GO_REF:0000107		 RGD
Ensembl		 PMID:17452644 GO_REF:0000107 NCBI chr 7:113,155,766...113,172,950
Ensembl chr 7:111,275,380...111,292,553 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) RGD PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) RGD PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18316482) RGD PMID:18316482 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO
IEA		 (PMID:14718568)
GO_REF:0000107		 RGD
Ensembl		 PMID:14718568 GO_REF:0000107 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:82,059,648...82,332,130
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Tubg1 tubulin, gamma 1 located_in ISO
IEA		 (PMID:15007207)
GO_REF:0000107		 RGD
Ensembl		 PMID:15007207 GO_REF:0000107 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein located_in ISO
IEA		 (PMID:12584241)
GO_REF:0000107		 RGD
Ensembl		 PMID:12584241 GO_REF:0000107 NCBI chr 1:215,945,558...216,017,247
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27796301)		 GO_Central
RGD		 PMID:27796301 GO_REF:0000033 NCBI chr 6:97,314,829...97,351,069
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254) RGD PMID:15944401 PMID:22164254 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in ISO
IEA		 (PMID:15944401), (PMID:22164254), (PMID:22854038)
GO_REF:0000002		 RGD
InterPro		 PMID:15944401 PMID:22164254 PMID:22854038 GO_REF:0000002 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21637789), (PMID:22164254)		 GO_Central
Ensembl
RGD		 PMID:21637789 PMID:22164254 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:12584241), (PMID:23133398)		 GO_Central
RGD		 PMID:12584241 PMID:23133398 GO_REF:0000033 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Tex11 testis expressed 11 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:16968740), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:16968740 PMID:22164254 PMID:22854038 GO_REF:0000033 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of ISO
IEA
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000033		 RGD
InterPro
Ensembl
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr14:87,902,458...87,917,221
Ensembl chr14:83,688,708...83,703,442 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of ISO
IEA
IBA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:61,188,755...61,196,868
Ensembl chr 2:59,461,607...59,469,689 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of ISO
IBA
IEA		 (PMID:31776186), (PMID:36841485)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000002		 RGD
GO_Central
UniProt
InterPro		 PMID:31776186 PMID:36841485 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:210,917,970...210,983,038
Ensembl chr 1:201,487,136...201,553,608 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IEA
IBA		 GO_REF:0000104
GO_REF:0000002
GO_REF:0000033		 UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:17291760), (PMID:17696610), (PMID:21743440), (PMID:28031483), (PMID:30718482), (PMID:31839538)		 Ensembl
RGD		 PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... GO_REF:0000107 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO
IEA		 (PMID:12091911), (PMID:17696610)
GO_REF:0000107		 RGD
Ensembl		 PMID:12091911 PMID:17696610 GO_REF:0000107 NCBI chr 6:110,612,535...110,649,408
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:27760146)		 Ensembl
RGD		 PMID:27760146 GO_REF:0000107 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO
IEA		 (PMID:10728666)
GO_REF:0000107		 RGD
Ensembl		 PMID:10728666 GO_REF:0000107 NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (PMID:9774970) RGD PMID:9774970 NCBI chr10:86,917,693...86,978,012
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO (PMID:9774970) RGD PMID:9774970 NCBI chr12:4,895,092...4,939,340
Ensembl chr12:59,819...100,567 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO
IEA		 (PMID:30718482)
GO_REF:0000107		 RGD
Ensembl		 PMID:30718482 GO_REF:0000107 NCBI chr 7:113,005,278...113,047,854
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Incenp inner centromere protein located_in ISO
IEA		 (PMID:19283064)
GO_REF:0000107		 RGD
Ensembl		 PMID:19283064 GO_REF:0000107 NCBI chr 1:215,945,558...216,017,247
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Kash5 KASH domain containing 5 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:24062341)		 GO_Central
RGD		 PMID:24062341 GO_REF:0000033 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:20551173)		 GO_Central
Ensembl
RGD		 PMID:20551173 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO
IEA		 (PMID:21743440)
GO_REF:0000107		 RGD
Ensembl		 PMID:21743440 GO_REF:0000107 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107
(PMID:18694567), (PMID:21743440)		 RGD
Ensembl		 PMID:9774970 PMID:18694567 PMID:21743440 GO_REF:0000107 NCBI chr 3:126,554,210...126,578,888
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO
IEA		 (PMID:15870106), (PMID:32328639)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870106 PMID:32328639 GO_REF:0000107 NCBI chr15:33,079,818...33,087,283
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO
IEA		 (PMID:21743440), (PMID:22711701)
GO_REF:0000107		 RGD
Ensembl		 PMID:21743440 PMID:22711701 GO_REF:0000107 NCBI chr10:60,647,185...60,698,279
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO
IEA		 (PMID:15870106), (PMID:22711701)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870106 PMID:22711701 GO_REF:0000107 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:15870106), (PMID:22711701), (PMID:32328639)		 Ensembl
RGD		 PMID:15870106 PMID:22711701 PMID:32328639 GO_REF:0000107 NCBI chr 1:262,606,731...262,649,832
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO
IEA		 (PMID:22711701)
GO_REF:0000107		 RGD
Ensembl		 PMID:22711701 GO_REF:0000107 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 IDA
ISO
IBA
IEA		 PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 GO_REF:0000033 GO_REF:0000107, RGD:11035335 NCBI chr 3:185,814,033...185,876,516
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:26362258)		 GO_Central
Ensembl
RGD		 PMID:26362258 GO_REF:0000033 GO_REF:0000107 NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO		 PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO
IEA		 (PMID:27760146)
GO_REF:0000107		 RGD
Ensembl		 PMID:27760146 GO_REF:0000107 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 3830403N18Rikl RIKEN cDNA 3830403N18 gene like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:133,561,127...133,574,507
Ensembl chr  X:133,556,226...133,574,454 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO
IEA		 (PMID:24390283)
GO_REF:0000002		 RGD
InterPro		 PMID:24390283 GO_REF:0000002 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Fam9c family with sequence similarity 9, member C is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:146,236,386...146,256,079
Ensembl chr  X:146,236,934...146,256,051 		JBrowse link
G Fam9cl1 family with sequence similarity 9, member C like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:146,218,106...146,237,824
Ensembl chr  X:146,218,018...146,236,058
Ensembl chr  X:146,218,018...146,236,058 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
ISO		 GO_REF:0000024
(PMID:12764197)		 UniProt
RGD		 PMID:12764197 GO_REF:0000024 NCBI chr12:26,947,443...27,026,913
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO
IEA		 (PMID:22854038)
GO_REF:0000107		 RGD
Ensembl		 PMID:22854038 GO_REF:0000107 NCBI chr 2:185,803,572...185,841,449
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO
IEA		 (PMID:22854038)
GO_REF:0000107		 RGD
Ensembl		 PMID:22854038 GO_REF:0000107 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO
IEA		 (PMID:8622925)
GO_REF:0000107		 RGD
Ensembl		 PMID:8622925 GO_REF:0000107 NCBI chr 6:100,864,172...100,866,946
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Incenp inner centromere protein located_in ISO
IEA		 (PMID:12584241)
GO_REF:0000107		 RGD
Ensembl		 PMID:12584241 GO_REF:0000107 NCBI chr 1:215,945,558...216,017,247
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:68,215,371...68,238,705
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Mlh1 mutL homolog 1 located_in IEA
ISO
IDA		 GO_REF:0000107
(PMID:15467367), (PMID:16260499)
PMID:16968740		 Ensembl
RGD		 PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107, RGD:8554354 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO
IEA		 (PMID:15467367), (PMID:16260499)
GO_REF:0000107		 RGD
Ensembl		 PMID:15467367 PMID:16260499 GO_REF:0000107 NCBI chr 6:110,612,535...110,649,408
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO
IEA		 (PMID:10809667), (PMID:16260499)
GO_REF:0000107		 RGD
Ensembl		 PMID:10809667 PMID:16260499 GO_REF:0000107 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) RGD PMID:16260499 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,838,528...85,845,476
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 NCBI chr 1:186,147,658...186,157,637
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO
IEA		 (PMID:12759374)
GO_REF:0000107		 RGD
Ensembl		 PMID:12759374 GO_REF:0000107 NCBI chr15:33,079,818...33,087,283
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rnf212 ring finger protein 212 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:23396135), (PMID:24390283)
GO_REF:0000002
GO_REF:0000033		 RGD
InterPro
GO_Central		 PMID:23396135 PMID:24390283 GO_REF:0000002 GO_REF:0000033 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831 		JBrowse link
G Rnf212b ring finger protein 212B located_in
is_active_in		 ISO
IEA
IBA		 (PMID:38865271)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033		 RGD
Ensembl
InterPro
GO_Central		 PMID:38865271 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:28,274,629...28,321,093
Ensembl chr15:28,244,083...28,321,347 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO
IEA		 (PMID:11564881), (PMID:16968740)
GO_REF:0000107		 RGD
Ensembl		 PMID:11564881 PMID:16968740 GO_REF:0000107 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 1:262,606,731...262,649,832
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in TAS
IEA
ISO		 GO_REF:0000107
(PMID:10698974)		 Ensembl
RGD		 PMID:10698974 PMID:11599053 GO_REF:0000107, RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in		 IDA
IEA
IBA		 PMID:16968740
GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 PMID:16968740 GO_REF:0000002 GO_REF:0000033, RGD:8554354 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in
located_in		 IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
IEA		 (PMID:12815066), (PMID:15937223), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
GO_REF:0000002		 RGD
InterPro		 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... GO_REF:0000002, RGD:9686370, RGD:8554354 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
IEA
ISO		 GO_REF:0000107
(PMID:18316482), (PMID:26362258)		 Ensembl
RGD		 PMID:18316482 PMID:26362258 PMID:9592139 GO_REF:0000107, RGD:69387 NCBI chr 3:185,814,033...185,876,516
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in		 ISO
IBA		 (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)
GO_REF:0000033		 RGD
GO_Central		 PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... GO_REF:0000033 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Sycp3l1 synaptonemal complex protein 3 like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630 		JBrowse link
G Sycp3l2 synaptonemal complex protein 3 like 2 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:133,857,772...133,871,791
Ensembl chr  X:133,857,773...133,871,714 		JBrowse link
G Syn1 synapsin I located_in ISO
IEA		 (PMID:14736746)
GO_REF:0000107		 RGD
Ensembl		 PMID:14736746 GO_REF:0000107 NCBI chr  X:3,725,745...3,780,940
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18369460) RGD PMID:18369460 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) RGD PMID:16968740 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO
IEA		 (PMID:15870106)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870106 GO_REF:0000107 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IDA
ISO
IBA		 (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701)
GO_REF:0000033		 RGD
GO_Central		 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 GO_REF:0000033, RGD:729937 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        membraneless organelle 5412
          intracellular membraneless organelle 5412
            chromosome 1423
              nuclear chromosome 232
                condensed nuclear chromosome 87
                  checkpoint clamp complex 4
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 47
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        intracellular organelle 13880
          intracellular membrane-bounded organelle 12307
            nucleus 7684
              nuclear lumen 4239
                nuclear chromosome 232
                  condensed nuclear chromosome 87
                    checkpoint clamp complex 4
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 47
paths to the root