Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
go back to main search page
Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


show annotations for term's descendants           Sort by:
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,555...98,247,125 		JBrowse link
G ADD3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:120,451,421...120,583,725
Ensembl chr14:120,451,575...120,583,722 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,854,668 		JBrowse link
G BRD4 bromodomain containing 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,989...62,345,362 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,564,122...78,575,462 		JBrowse link
G CDX2 caudal type homeobox 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057 		JBrowse link
G CHEK1 checkpoint kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,753,528...52,790,700 		JBrowse link
G CHMP1A charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,866...358,653 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,177...9,470,113 		JBrowse link
G DNMT3L DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chr13:207,119,025...207,141,990
Ensembl chr13:207,119,051...207,132,538 		JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr 7:20,774,135...20,777,244
Ensembl chr 7:20,775,859...20,776,497 		JBrowse link
G H2AX H2A.X variant histone located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,308,824...46,310,494
Ensembl chr 9:46,309,653...46,310,084 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650 		JBrowse link
G IHO1 interactor of HORMAD1 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:31,802,963...31,836,911
Ensembl chr13:31,802,948...31,837,912 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:80,922,032...81,105,135
Ensembl chr 4:80,921,682...81,108,360 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,153,397...40,183,622 		JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:96,474,510...96,590,706
Ensembl chr 3:96,474,549...96,595,143 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,361...26,634,567 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,691...137,534,233 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410 		JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,421...60,785,901 		JBrowse link
G NCAPG non-SMC condensin I complex subunit G located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:12,759,225...12,807,164
Ensembl chr 8:12,759,641...12,807,163 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:653,182...713,825
Ensembl chr18:653,224...717,200 		JBrowse link
G NCAPH non-SMC condensin I complex subunit H located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,893,013 		JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,471...233,475 		JBrowse link
G NEK2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:131,547,044...131,560,527
Ensembl chr 9:131,547,069...131,561,095 		JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:29,719,024...29,734,811
Ensembl chr15:29,714,297...29,754,978 		JBrowse link
G NOL6 nucleolar protein 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,022,035...33,035,201
Ensembl chr10:33,022,035...33,035,200 		JBrowse link
G RAD21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:21,772,821...21,802,453
Ensembl chr 4:21,772,855...21,802,715 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in ISO (PMID:24797475) MGI PMID:24797475 NCBI chr17:34,035,526...34,064,215 JBrowse link
G RAD50 RAD50 double strand break repair protein is_active_in ISO
IBA		 sex vesicles/chromatin of XY bivalent RGD
GO_Central		 PMID:10855503 GO_REF:0000033 RGD:2300257 NCBI chr 2:134,844,460...134,939,188
Ensembl chr 2:134,700,817...134,939,189 		JBrowse link
G RAD51 RAD51 recombinase located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,665...130,640,136 		JBrowse link
G RCC1 regulator of chromosome condensation 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:85,540,766...85,565,869
Ensembl chr 6:85,546,024...85,565,866 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,719...48,048,741 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:68,285,803...68,288,213
Ensembl chr 4:68,285,803...68,288,195 		JBrowse link
G RSPH1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:205,808,923...205,827,098
Ensembl chr13:205,808,671...205,827,213 		JBrowse link
G SHOC1 shortage in chiasmata 1 located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:252,465,893...252,555,063
Ensembl chr 1:252,466,222...252,562,066 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,147...245,475,929 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,272...100,117,309 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,175,915...8,211,889 		JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:9,273,136...9,293,258
Ensembl chr 5:9,273,240...9,293,254 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656 		JBrowse link
G TEX11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,779 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:74,768,251...74,846,377
Ensembl chr13:74,768,257...74,846,340 		JBrowse link
G TTN titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr15:84,226,953...84,501,320 JBrowse link
G TUBG1 tubulin gamma 1 located_in IEA Ensembl GO_REF:0000107 Ensembl chr12:20,211,002...20,221,103 JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1H14orf39 chromosome 1 C14orf39 homolog located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,490...189,470,541 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,821 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254)
(PMID:15944401), (PMID:22164254)		 MGI
HGNC-UCL		 PMID:15944401 PMID:22164254 MGI:3581466 NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,726,208...141,735,919 		JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in IEA InterPro GO_REF:0000002 NCBI chr 2:66,118,439...66,133,454
Ensembl chr 2:66,128,492...66,131,963 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:168,908...201,037
Ensembl chr 5:181,056...200,832 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398 		JBrowse link
G TEX11 testis expressed 11 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,779 		JBrowse link
G TEX12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,148...39,869,979 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component part_of IEA
IBA		 InterPro
Ensembl
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr18:48,522,914...48,539,267
Ensembl chr18:48,522,998...48,534,682 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr16:20,491,851...20,512,198
Ensembl chr16:20,466,889...20,512,135 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A part_of IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 2:5,123,142...5,129,740
Ensembl chr 2:5,123,134...5,129,703 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B part_of IEA
IBA		 UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr14:31,869,570...31,903,485
Ensembl chr14:31,869,684...31,903,823 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,555...98,247,125 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,645 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,854,668 		JBrowse link
G BRCA2 BRCA2 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr11:8,805,950...8,858,128
Ensembl chr11:8,805,953...8,858,418 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,177...9,470,113 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,821 		JBrowse link
G KASH5 KASH domain containing 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,476,989...54,501,099
Ensembl chr 6:54,477,058...54,500,887 		JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:88,188,920...88,399,072
Ensembl chr 1:88,189,903...88,399,137 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in ISO (PMID:21743440) MGI PMID:21743440 NCBI chr17:34,035,526...34,064,215 JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,665...130,640,136 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,719...48,048,741 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:46,143,738...46,202,187
Ensembl chr  X:46,144,920...46,218,543 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:120,969,629...121,008,924
Ensembl chr14:120,969,631...121,021,497 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,175,915...8,211,889 		JBrowse link
G SYCP2 synaptonemal complex protein 2 is_active_in
located_in		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:59,875,992...59,962,314
Ensembl chr17:59,875,993...59,955,209 		JBrowse link
G SYCP2L synaptonemal complex protein 2 like is_active_in
located_in		 IBA
ISO		 (PMID:26362258) GO_Central
MGI		 PMID:26362258 GO_REF:0000033 NCBI chr 7:7,574,153...7,647,874
Ensembl chr 7:7,574,372...7,640,989 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... MGI:1352918 RGD:11035335 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,691...137,534,233 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,555...98,247,125 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,564,122...78,575,462 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:10,659,456...10,716,210
Ensembl chr 3:10,669,664...10,682,618 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650 		JBrowse link
G HORMAD2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 Ensembl chr14:47,072,091...47,161,889 JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 located_in ISO (PMID:8622925) MGI PMID:8622925 NCBI chr 7:88,607,140...88,609,947 JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,821 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,153,397...40,183,622 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,691...137,534,233 		JBrowse link
G MSH5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chr 7:23,852,864...23,872,760
Ensembl chr 7:23,852,918...23,872,755 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chr12:20,881,807...20,891,482
Ensembl chr12:20,882,344...20,891,484 		JBrowse link
G PLK1 polo like kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:22,537,814...22,550,901
Ensembl chr 3:22,537,831...22,552,380 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537 		JBrowse link
G RNF212 ring finger protein 212 located_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 8:393,707...413,952
Ensembl chr 8:399,715...413,896 		JBrowse link
G RNF212B ring finger protein 212B located_in IEA InterPro GO_REF:0000002 NCBI chr 7:75,798,895...75,831,455
Ensembl chr 7:75,796,882...75,829,620 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:46,143,738...46,202,187
Ensembl chr  X:46,144,920...46,218,543 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr14:120,969,629...121,008,924
Ensembl chr14:120,969,631...121,021,497 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,175,915...8,211,889 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,726,208...141,735,919 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
Ensembl
InterPro		 PMID:8660935 GO_REF:0000002 GO_REF:0000107 RGD:9686370 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO
IEA		 RGD
Ensembl		 PMID:9592139 GO_REF:0000107 RGD:69387 NCBI chr17:59,875,992...59,962,314
Ensembl chr17:59,875,993...59,955,209 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656 		JBrowse link
G SYN1 synapsin I located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,090,245...42,142,254
Ensembl chr  X:42,090,246...42,142,224 		JBrowse link
G TEX11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,779 		JBrowse link
G TEX12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,148...39,869,979 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,175,915...8,211,889 		JBrowse link
G SYCP1 synaptonemal complex protein 1 is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:1464329 GO_REF:0000033 GO_REF:0000107 RGD:729937 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18393
    cellular anatomical structure 18161
      organelle 12180
        non-membrane-bounded organelle 4504
          intracellular non-membrane-bounded organelle 4504
            chromosome 1275
              nuclear chromosome 212
                condensed nuclear chromosome 77
                  checkpoint clamp complex 4
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 40
Path 2
Term Annotations click to browse term
  cellular_component 18393
    cellular anatomical structure 18161
      organelle 12180
        intracellular organelle 11773
          intracellular membrane-bounded organelle 10623
            nucleus 6586
              nuclear lumen 3837
                nuclear chromosome 212
                  condensed nuclear chromosome 77
                    checkpoint clamp complex 4
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 40
paths to the root