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ONTOLOGY REPORT - ANNOTATIONS


Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


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condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD3 adducin 3 IEA Ensembl GO_REF:0000107 NCBI chr14:120,451,421...120,583,725
Ensembl chr14:120,451,573...120,583,723
JBrowse link
G AGO3 argonaute RISC catalytic component 3 ISO (MGI:MGI:5437526|PMID:22863743) MGI PMID:22863743 MGI:MGI:5437526 NCBI chr 6:92,081,763...92,225,811
Ensembl chr 6:92,036,834...92,215,149
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO (MGI:MGI:4457793|PMID:20551173), (MGI:MGI:5700253|PMID:26490168) MGI PMID:20551173, PMID:26490168 MGI:MGI:4457793, MGI:MGI:5700253 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRD4 bromodomain containing 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,987...62,345,387
JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 ISO (MGI:MGI:5606256|PMID:24891606) MGI PMID:24891606 MGI:MGI:5606256 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,553,764...78,575,516
JBrowse link
G CDX2 caudal type homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057
JBrowse link
G CHEK1 checkpoint kinase 1 ISO (PMID:9382850) UniProtKB PMID:9382850 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,726,885...52,790,706
JBrowse link
G CHMP1A charged multivesicular body protein 1A IEA Ensembl GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,922...358,655
JBrowse link
G DMC1 DNA meiotic recombinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,307...9,470,549
JBrowse link
G DNMT3L DNA methyltransferase 3 like IEA Ensembl GO_REF:0000107 NCBI chr13:207,119,025...207,141,990 JBrowse link
G H1-6 H1.6 linker histone, cluster member ISO (MGI:MGI:3774244|PMID:18316482) MGI PMID:18316482 MGI:MGI:3774244 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G HORMAD1 HORMA domain containing 1 ISO (MGI:MGI:5315075|PMID:22164254), (MGI:MGI:5586966|PMID:22530760) MGI PMID:22164254, PMID:22530760 MGI:MGI:5315075, MGI:MGI:5586966 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
JBrowse link
G IHO1 interactor of HORMAD1 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:31,802,963...31,836,911
Ensembl chr13:31,775,668...31,836,911
JBrowse link
G KIFAP3 kinesin associated protein 3 IEA Ensembl GO_REF:0000107 NCBI chr 4:80,922,032...81,105,135
Ensembl chr 4:80,922,013...81,108,408
JBrowse link
G LIG3 DNA ligase 3 ISO (MGI:MGI:85057|PMID:9001252) MGI PMID:9001252 MGI:MGI:85057 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G LOC100522201 histone H2AX IEA Ensembl GO_REF:0000107 NCBI chr 9:46,308,824...46,310,494
Ensembl chr 9:46,309,653...46,310,084
JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing IEA Ensembl GO_REF:0000107 NCBI chr 3:96,474,510...96,590,706
Ensembl chr 3:96,474,549...96,595,143
JBrowse link
G MLH1 mutL homolog 1 ISO (MGI:MGI:3774244|PMID:18316482), (MGI:MGI:5477835|PMID:23555294), (MGI:MGI:5606256|PMID:24891606) MGI PMID:18316482, PMID:23555294, PMID:24891606 MGI:MGI:3774244, MGI:MGI:5477835, MGI:MGI:5606256 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,360...26,634,568
JBrowse link
G MSH4 mutS homolog 4 ISO (MGI:MGI:3774244|PMID:18316482), (MGI:MGI:5315075|PMID:22164254), (MGI:MGI:5477835|PMID:23555294) MGI PMID:18316482, PMID:22164254, PMID:23555294 MGI:MGI:3774244, MGI:MGI:5315075, MGI:MGI:5477835 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,919...137,534,233
JBrowse link
G NEK2 NIMA related kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:131,547,044...131,560,527
Ensembl chr 9:131,547,084...131,560,527
JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 IEA Ensembl GO_REF:0000107 NCBI chr15:29,719,024...29,734,811
Ensembl chr15:29,714,297...29,734,558
JBrowse link
G NOL6 nucleolar protein 6 IEA Ensembl GO_REF:0000107 NCBI chr10:33,022,035...33,035,201
Ensembl chr10:33,022,035...33,035,201
JBrowse link
G RAD21 RAD21 cohesin complex component ISO (MGI:MGI:5575825|PMID:24797475) MGI PMID:24797475 MGI:MGI:5575825 NCBI chr 4:21,772,821...21,802,453
Ensembl chr 4:21,772,888...21,809,435
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5575825|PMID:24797475) MGI PMID:24797475 MGI:MGI:5575825 NCBI chr17:34,035,526...34,064,215 JBrowse link
G RAD50 RAD50 double strand break repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:134,844,460...134,939,188 JBrowse link
G RAD51 RAD51 recombinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RCC1 regulator of chromosome condensation 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:85,540,766...85,565,869
Ensembl chr 6:85,546,024...85,564,877
JBrowse link
G REC8 REC8 meiotic recombination protein ISO (MGI:MGI:3771209|PMID:18084284), (MGI:MGI:5315075|PMID:22164254), (MGI:MGI:5575825|PMID:24797475) MGI PMID:18084284, PMID:22164254, PMID:24797475 MGI:MGI:3771209, MGI:MGI:5315075, MGI:MGI:5575825 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
G RPA1 replication protein A1 ISO (MGI:MGI:3774244|PMID:18316482), (MGI:MGI:3794139|PMID:18283110), (MGI:MGI:4457793|PMID:20551173), (MGI:MGI:5315075|PMID:22164254) MGI PMID:18283110, PMID:18316482, PMID:20551173, PMID:22164254 MGI:MGI:3774244, MGI:MGI:3794139, MGI:MGI:4457793, MGI:MGI:5315075 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog IEA Ensembl GO_REF:0000107 NCBI chr 4:68,285,803...68,288,213
Ensembl chr 4:68,285,803...68,288,195
JBrowse link
G RSPH1 radial spoke head component 1 IEA Ensembl GO_REF:0000107 NCBI chr13:205,808,923...205,827,098
Ensembl chr13:205,806,686...205,827,204
JBrowse link
G SHOC1 shortage in chiasmata 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 1:252,465,893...252,555,063
Ensembl chr 1:252,466,430...252,559,130
JBrowse link
G SMC1B structural maintenance of chromosomes 1B ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395
JBrowse link
G STAG3 stromal antigen 3 ISO (MGI:MGI:5315075|PMID:22164254), (MGI:MGI:5575825|PMID:24797475) MGI PMID:22164254, PMID:24797475 MGI:MGI:5315075, MGI:MGI:5575825 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,176,139...8,211,889
JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:9,273,136...9,293,258
Ensembl chr 5:9,273,240...9,293,246
JBrowse link
G SYCP1 synaptonemal complex protein 1 ISO (MGI:MGI:5437526|PMID:22863743), (MGI:MGI:5504589|PMID:22854038), (MGI:MGI:5567006|PMID:24589552), (MGI:MGI:5606256|PMID:24891606) MGI PMID:22854038, PMID:22863743, PMID:24589552, PMID:24891606 MGI:MGI:5437526, MGI:MGI:5504589, MGI:MGI:5567006, MGI:MGI:5606256 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:3774244|PMID:18316482), (MGI:MGI:5285037|PMID:21621532), (MGI:MGI:5437526|PMID:22863743), (MGI:MGI:5567006|PMID:24589552), (MGI:MGI:5606256|PMID:24891606) MGI PMID:18316482, PMID:21621532, PMID:22863743, PMID:24589552, PMID:24891606 MGI:MGI:3774244, MGI:MGI:5285037, MGI:MGI:5437526, MGI:MGI:5567006, MGI:MGI:5606256 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TEX11 testis expressed 11 ISO (MGI:MGI:3774244|PMID:18316482) MGI PMID:18316482 MGI:MGI:3774244 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,316
JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr13:74,768,251...74,846,377
Ensembl chr13:74,766,426...74,846,793
JBrowse link
G TTN titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr15:84,226,953...84,501,320 JBrowse link
G TUBG1 tubulin gamma 1 IEA Ensembl GO_REF:0000107 Ensembl chr12:20,171,705...20,220,929 JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1H14orf39 chromosome 1 C14orf39 homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,491...189,471,537
JBrowse link
G INCENP inner centromere protein IEA Ensembl GO_REF:0000107 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,832
JBrowse link
G SYCE1 synaptonemal complex central element protein 1 IEA Ensembl GO_REF:0000107 NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,725,884...141,735,864
JBrowse link
G SYCE2 synaptonemal complex central element protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:66,118,439...66,133,454
Ensembl chr 2:66,128,492...66,131,447
JBrowse link
G SYCE3 synaptonemal complex central element protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:168,908...201,037
Ensembl chr 5:168,526...200,832
JBrowse link
G SYCP1 synaptonemal complex protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G TEX11 testis expressed 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,316
JBrowse link
G TEX12 testis expressed 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,177...39,916,486
JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:48,522,914...48,539,267
Ensembl chr18:48,522,997...48,538,788
JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:20,491,851...20,512,198
Ensembl chr16:20,466,889...20,512,135
JBrowse link
G RAD9A RAD9 checkpoint clamp component A IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 2:5,123,142...5,129,740
Ensembl chr 2:5,123,124...5,129,906
JBrowse link
G RAD9B RAD9 checkpoint clamp component B IEA UniProt GO_REF:0000104 NCBI chr14:31,869,570...31,903,485
Ensembl chr14:31,871,719...31,903,417
JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,315...98,259,624
Ensembl chr 7:98,220,315...98,259,624
JBrowse link
G MLH1 mutL homolog 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
condensed nuclear chromosome inner kinetochore term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPK centromere protein K IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:44,008,673...44,080,565
Ensembl chr16:44,041,485...44,080,526
JBrowse link
G DSN1 DSN1 component of MIS12 kinetochore complex IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:39,992,769...40,017,388
Ensembl chr17:39,990,623...40,017,500
JBrowse link
condensed nuclear chromosome kinetochore term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUB1 BUB1 mitotic checkpoint serine/threonine kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:45,585,188...45,623,240
Ensembl chr 3:45,585,226...45,624,543
JBrowse link
G BUB1B BUB1 mitotic checkpoint serine/threonine kinase B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:131,093,026...131,143,840 JBrowse link
G CENPA centromere protein A IEA Ensembl GO_REF:0000107 NCBI chr 3:112,263,912...112,272,638
Ensembl chr 3:112,263,913...112,272,621
JBrowse link
G CENPC centromere protein C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:65,237,825...65,315,788
Ensembl chr 8:65,238,088...65,315,714
JBrowse link
G CENPE centromere protein E ISO (MGI:MGI:3806388|PMID:18765791) MGI PMID:18765791 MGI:MGI:3806388 NCBI chr 8:117,888,968...117,965,325
Ensembl chr 8:117,889,009...117,965,792
JBrowse link
G CENPT centromere protein T IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:28,450,568...28,456,620
Ensembl chr 6:28,446,687...28,456,230
JBrowse link
G MIS18BP1 MIS18 binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:175,401,386...175,449,399
Ensembl chr 1:175,399,406...175,448,276
JBrowse link
G NDC80 NDC80 kinetochore complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:104,000,794...104,055,785
Ensembl chr 6:103,998,698...104,055,762
JBrowse link
G NUF2 NUF2 component of NDC80 kinetochore complex IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:87,162,873...87,194,193
Ensembl chr 4:87,162,817...87,194,170
JBrowse link
G PELI1 pellino E3 ubiquitin protein ligase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:77,740,460...77,796,911
Ensembl chr 3:77,658,664...77,796,916
JBrowse link
G REC8 REC8 meiotic recombination protein IEA Ensembl GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
condensed nuclear chromosome outer kinetochore term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUB1 BUB1 mitotic checkpoint serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 3:45,585,188...45,623,240
Ensembl chr 3:45,585,226...45,624,543
JBrowse link
G CCNB1 cyclin B1 IEA Ensembl GO_REF:0000107 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G NDC80 NDC80 kinetochore complex component ISS
IEA
AgBase
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:104,000,794...104,055,785
Ensembl chr 6:103,998,698...104,055,762
JBrowse link
G PLK1 polo like kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:22,537,814...22,550,901
Ensembl chr 3:22,537,816...22,555,023
JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCA2 BRCA2 DNA repair associated ISO (PMID:9774970) MGI PMID:9774970 NCBI chr11:8,805,950...8,858,128 JBrowse link
G INCENP inner centromere protein IEA Ensembl GO_REF:0000107 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,832
JBrowse link
G KASH5 KASH domain containing 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:54,476,989...54,501,099
Ensembl chr 6:54,476,877...54,501,165
JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:88,188,920...88,399,072
Ensembl chr 1:88,189,845...88,399,111
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5288570|PMID:21743440) MGI PMID:21743440 MGI:MGI:5288570 NCBI chr17:34,035,526...34,064,215 JBrowse link
G RAD51 RAD51 recombinase IEA Ensembl GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G REC8 REC8 meiotic recombination protein IEA Ensembl GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
G RPA1 replication protein A1 ISO (MGI:MGI:5288570|PMID:21743440), (MGI:MGI:5428050|PMID:22711701) MGI PMID:21743440, PMID:22711701 MGI:MGI:5288570, MGI:MGI:5428050 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G SMC1B structural maintenance of chromosomes 1B IEA Ensembl GO_REF:0000107 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395
JBrowse link
G SMC3 structural maintenance of chromosomes 3 IEA Ensembl GO_REF:0000107 NCBI chr14:120,969,629...121,008,924
Ensembl chr14:120,969,632...121,008,924
JBrowse link
G STAG3 stromal antigen 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,176,139...8,211,889
JBrowse link
G SYCP2 synaptonemal complex protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:59,875,992...59,962,314
Ensembl chr17:59,877,505...59,955,209
JBrowse link
G SYCP2L synaptonemal complex protein 2 like ISO (MGI:MGI:5692009|PMID:26362258) MGI PMID:26362258 MGI:MGI:5692009 NCBI chr 7:7,574,153...7,647,874
Ensembl chr 7:7,503,074...7,640,989
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO PMID:9933407
(MGI:MGI:1352918|PMID:10678170), (MGI:MGI:3839184|PMID:19283064), (MGI:MGI:4452449|PMID:18802469), (MGI:MGI:5049827|PMID:21539824), (MGI:MGI:5288570|PMID:21743440), (MGI:MGI:5314623|PMID:22011390), (MGI:MGI:5428050|PMID:22711701), (MGI:MGI:5470363|PMID:23133398), (MGI:MGI:5477835|PMID:23555294), (MGI:MGI:5504589|PMID:22854038), (MGI:MGI:5609844|PMID:25533956), (MGI:MGI:5661094|PMID:25675407)
UniProt
MGI
PMID:9933407, PMID:10678170, PMID:18802469, PMID:19283064, PMID:21539824, PMID:21743440, PMID:22011390, PMID:22711701, PMID:22854038, PMID:23133398, PMID:23555294, PMID:25533956, PMID:25675407 MGI:MGI:1352918, MGI:MGI:3839184, MGI:MGI:4452449, MGI:MGI:5049827, MGI:MGI:5288570, MGI:MGI:5314623, MGI:MGI:5428050, MGI:MGI:5470363, MGI:MGI:5477835, MGI:MGI:5504589, MGI:MGI:5609844, MGI:MGI:5661094, RGD:11035335 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
nuclear condensin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCAPD2 non-SMC condensin I complex subunit D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
nuclear meiotic cohesin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD21 RAD21 cohesin complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:21,772,821...21,802,453
Ensembl chr 4:21,772,888...21,809,435
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr17:34,035,526...34,064,215 JBrowse link
G REC8 REC8 meiotic recombination protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
G SMC1B structural maintenance of chromosomes 1B IEA Ensembl GO_REF:0000107 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395
JBrowse link
G SMC3 structural maintenance of chromosomes 3 IEA Ensembl GO_REF:0000107 NCBI chr14:120,969,629...121,008,924
Ensembl chr14:120,969,632...121,008,924
JBrowse link
G STAG3 stromal antigen 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,176,139...8,211,889
JBrowse link
nuclear MIS12/MIND complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSN1 DSN1 component of MIS12 kinetochore complex IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:39,992,769...40,017,388
Ensembl chr17:39,990,623...40,017,500
JBrowse link
G MIS12 MIS12 kinetochore complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:51,505,376...51,508,337
Ensembl chr12:51,505,381...51,507,943
JBrowse link
G PMF1 polyamine modulated factor 1 IEA InterPro GO_REF:0000002 NCBI chr 4:93,810,863...93,836,786
Ensembl chr 4:93,811,744...93,857,117
JBrowse link
nuclear mitotic cohesin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD21 RAD21 cohesin complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:21,772,821...21,802,453
Ensembl chr 4:21,772,888...21,809,435
JBrowse link
G REC8 REC8 meiotic recombination protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 IEA Ensembl GO_REF:0000107 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,919...137,534,233
JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,315...98,259,624
Ensembl chr 7:98,220,315...98,259,624
JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 colocalizes_with IEA
ISO
(MGI:MGI:5545848|PMID:24390283) Ensembl
UniProtKB
PMID:24390283 GO_REF:0000107, MGI:MGI:5545848 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,553,764...78,575,516
JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) IEA Ensembl GO_REF:0000107 NCBI chr 3:10,659,456...10,716,210
Ensembl chr 3:10,669,828...10,708,523
JBrowse link
G HORMAD1 HORMA domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
JBrowse link
G HORMAD2 HORMA domain containing 2 IEA Ensembl GO_REF:0000107 Ensembl chr14:47,079,163...47,161,889 JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 ISO (MGI:MGI:82564|PMID:8622925) MGI PMID:8622925 MGI:MGI:82564 NCBI chr 7:88,607,140...88,609,947 JBrowse link
G INCENP inner centromere protein ISO (MGI:MGI:2653770|PMID:12584241) MGI PMID:12584241 MGI:MGI:2653770 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,832
JBrowse link
G LIG3 DNA ligase 3 ISO (MGI:MGI:85057|PMID:9001252) MGI PMID:9001252 MGI:MGI:85057 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G MLH1 mutL homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MSH4 mutS homolog 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,919...137,534,233
JBrowse link
G MSH5 mutS homolog 5 ISO (MGI:MGI:3612193|PMID:16260499) MGI PMID:16260499 MGI:MGI:3612193 NCBI chr 7:23,852,864...23,872,760 JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chr12:20,881,807...20,891,482
Ensembl chr12:20,882,344...20,895,645
JBrowse link
G PLK1 polo like kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:22,537,814...22,550,901
Ensembl chr 3:22,537,816...22,555,023
JBrowse link
G RAD21 RAD21 cohesin complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:21,772,821...21,802,453
Ensembl chr 4:21,772,888...21,809,435
JBrowse link
G REC8 REC8 meiotic recombination protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
G RNF212 ring finger protein 212 colocalizes_with ISO
IEA
(MGI:MGI:5487470|PMID:23396135), (MGI:MGI:5545848|PMID:24390283) UniProtKB
InterPro
PMID:23396135, PMID:24390283 GO_REF:0000002, MGI:MGI:5487470, MGI:MGI:5545848 NCBI chr 8:393,707...413,952 JBrowse link
G RNF212B ring finger protein 212B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,798,895...75,831,455
Ensembl chr 7:75,796,882...75,829,620
JBrowse link
G SMC1B structural maintenance of chromosomes 1B ISO (MGI:MGI:2150452|PMID:11564881), (MGI:MGI:3664716|PMID:16968740) MGI PMID:11564881, PMID:16968740 MGI:MGI:2150452, MGI:MGI:3664716 NCBI chr 5:3,976,098...4,067,148
Ensembl chr 5:3,976,140...4,067,395
JBrowse link
G STAG3 stromal antigen 3 ISO (MGI:MGI:1354041|PMID:10698974) MGI PMID:10698974 MGI:MGI:1354041 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,176,139...8,211,889
JBrowse link
G SYCE1 synaptonemal complex central element protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,725,884...141,735,864
JBrowse link
G SYCP1 synaptonemal complex protein 1 IEA InterPro GO_REF:0000002 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP2 synaptonemal complex protein 2 ISO (MGI:MGI:3774244|PMID:18316482), (MGI:MGI:5692009|PMID:26362258) MGI
RGD
PMID:9592139, PMID:18316482, PMID:26362258 MGI:MGI:3774244, MGI:MGI:5692009, RGD:69387 NCBI chr17:59,875,992...59,962,314
Ensembl chr17:59,877,505...59,955,209
JBrowse link
G SYCP3 synaptonemal complex protein 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G SYN1 synapsin I IEA Ensembl GO_REF:0000107 NCBI chr  X:42,090,245...42,142,254
Ensembl chr  X:42,090,245...42,142,224
JBrowse link
G TEX11 testis expressed 11 colocalizes_with IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,316
JBrowse link
G TEX12 testis expressed 12 ISO (MGI:MGI:3664716|PMID:16968740) MGI PMID:16968740 MGI:MGI:3664716 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,177...39,916,486
JBrowse link
G WAPL WAPL cohesin release factor IEA Ensembl GO_REF:0000107 NCBI chr14:87,492,452...87,588,678
Ensembl chr14:87,492,453...87,588,570
JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAG3 stromal antigen 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,176,139...8,211,889
JBrowse link
G SYCP1 synaptonemal complex protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:3578071|PMID:15870106) MGI PMID:15870106 MGI:MGI:3578071 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16940
    cellular anatomical entity 16852
      organelle 11466
        non-membrane-bounded organelle 4239
          intracellular non-membrane-bounded organelle 4220
            chromosome 1248
              nuclear chromosome 219
                condensed nuclear chromosome 89
                  checkpoint clamp complex 4
                  chiasma 2
                  condensed nuclear chromosome kinetochore + 17
                  meiotic recombination initiation complex 0
                  nuclear cohesin complex + 6
                  nuclear condensin complex 4
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 40
Path 2
Term Annotations click to browse term
  cellular_component 16940
    cellular anatomical entity 16852
      organelle 11466
        intracellular organelle 11112
          intracellular membrane-bounded organelle 9406
            nucleus 6317
              nuclear lumen 3660
                nuclear chromosome 219
                  condensed nuclear chromosome 89
                    checkpoint clamp complex 4
                    chiasma 2
                    condensed nuclear chromosome kinetochore + 17
                    meiotic recombination initiation complex 0
                    nuclear cohesin complex + 6
                    nuclear condensin complex 4
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 40
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.