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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome

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condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in ISO (PMID:1864459) MGI PMID:1864459 NCBI chrNW_004624737:36,091,671...36,256,398 JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO (PMID:22863743) MGI PMID:22863743 NCBI chrNW_004624764:18,948,469...19,078,247
Ensembl chrNW_004624764:18,948,484...19,052,523 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) MGI PMID:20551173 PMID:26490168 NCBI chrNW_004624795:1,186,043...1,238,986
Ensembl chrNW_004624795:1,188,136...1,241,964 		JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 MGI PMID:10938129 PMID:16339075 PMID:18039861 NCBI chrNW_004624901:2,348,218...2,434,429
Ensembl chrNW_004624901:2,346,734...2,380,852 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624825:4,842,246...4,860,758
Ensembl chrNW_004624825:4,853,388...4,860,217 		JBrowse link
G Cdx2 caudal type homeobox 2 located_in ISO (PMID:15509711) MGI PMID:15509711 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Chek1 checkpoint kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624927:1,609,404...1,643,409
Ensembl chrNW_004624927:1,610,878...1,643,409 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:302,344...309,117
Ensembl chrNW_004624746:302,404...309,644 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:9,547,327...9,585,549
Ensembl chrNW_004624752:9,548,015...9,585,958 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in ISO (PMID:16543361) MGI PMID:16543361 NCBI chrNW_004624745:29,869,174...29,878,189
Ensembl chrNW_004624745:29,869,196...29,878,169 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22164254), (PMID:22530760) MGI PMID:22164254 PMID:22530760 NCBI chrNW_004624772:18,379,154...18,403,456
Ensembl chrNW_004624772:18,379,745...18,403,745 		JBrowse link
G Iho1 interactor of HORMAD1 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:3,208,648...3,249,281
Ensembl chrNW_004624730:3,215,447...3,239,060 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in ISO (PMID:16298999) BHF-UCL PMID:16298999 NCBI chrNW_004624805:10,381,217...10,521,349
Ensembl chrNW_004624805:10,416,095...10,504,234 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004624875:2,871,944...2,907,757
Ensembl chrNW_004624875:2,872,357...2,893,967 		JBrowse link
G LOC101701891 histone H2AX located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) MGI PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chrNW_004624784:14,475,813...14,477,269
Ensembl chrNW_004624784:14,476,730...14,477,161 		JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:25,340,588...25,452,593
Ensembl chrNW_004624738:25,338,098...25,452,676 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO (PMID:18316482), (PMID:23555294), (PMID:24891606) MGI PMID:18316482 PMID:23555294 PMID:24891606 NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:26,642,800...26,677,187
Ensembl chrNW_004624734:26,642,946...26,674,315 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chrNW_004624735:39,095,559...39,153,936
Ensembl chrNW_004624735:39,092,781...39,153,920 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:18316482), (PMID:22164254), (PMID:23555294) MGI PMID:18316482 PMID:22164254 PMID:23555294 NCBI chrNW_004624742:21,098,102...21,167,472
Ensembl chrNW_004624742:21,098,101...21,167,398 		JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624860:3,229,091...3,256,631
Ensembl chrNW_004624860:3,230,577...3,256,407 		JBrowse link
G Ncapd3 non-SMC condensin II complex subunit D3 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624812:8,708,061...8,782,282
Ensembl chrNW_004624812:8,709,735...8,782,200 		JBrowse link
G Ncapg non-SMC condensin I complex subunit G located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624755:14,067,931...14,100,593
Ensembl chrNW_004624755:14,068,009...14,100,438 		JBrowse link
G Ncapg2 non-SMC condensin II complex subunit G2 located_in ISO (PMID:25474630)
(MGI:5644098|PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624800:432,307...494,361
Ensembl chrNW_004624800:432,258...498,718 		JBrowse link
G Ncaph non-SMC condensin I complex subunit H located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624749:2,411,952...2,439,981
Ensembl chrNW_004624749:2,411,970...2,444,446 		JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624752:257,885...268,971
Ensembl chrNW_004624752:258,039...268,737 		JBrowse link
G Nek2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:17,334,782...17,351,609
Ensembl chrNW_004624771:17,334,681...17,352,259 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO (PMID:11342549) UniProt PMID:11342549 NCBI chrNW_004624732:23,470,077...23,478,795
Ensembl chrNW_004624732:23,470,175...23,478,427 		JBrowse link
G Nol6 nucleolar protein 6 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624736:38,211,389...38,236,793
Ensembl chrNW_004624736:38,212,437...38,227,288 		JBrowse link
G Psmc3ip PSMC3 interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,535,350...1,540,249
Ensembl chrNW_004624795:1,536,148...1,539,866 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:15,131,106...15,157,512
Ensembl chrNW_004624763:15,131,005...15,158,155 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:2,486,612...2,542,452
Ensembl chrNW_004624741:2,485,471...2,542,500 		JBrowse link
G Rad50 RAD50 double strand break repair protein located_in IEA
ISO		 sex vesicles/chromatin of XY bivalent TreeGrafter
RGD		 PMID:10855503 GO_REF:0000118 RGD:2300257 NCBI chrNW_004624733:39,445,083...39,544,415
Ensembl chrNW_004624733:39,447,461...39,544,409 		JBrowse link
G Rad51 RAD51 recombinase located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624804:7,957,175...7,983,078
Ensembl chrNW_004624804:7,957,253...7,983,619 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO (PMID:15014043) UniProt PMID:15014043 NCBI chrNW_004624764:12,316,976...12,360,673
Ensembl chrNW_004624764:12,326,738...12,362,213 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,361,345...8,369,356
Ensembl chrNW_004624820:8,361,400...8,368,347 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chrNW_004624786:4,547,889...4,604,605
Ensembl chrNW_004624786:4,547,962...4,604,290 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) UniProt PMID:19465021 NCBI chrNW_004624744:24,914,717...24,916,940
Ensembl chrNW_004624744:24,915,703...24,916,800 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:9578619) MGI PMID:9578619 NCBI chrNW_004624745:28,009,028...28,020,007
Ensembl chrNW_004624745:28,008,959...28,021,529 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624760:23,220,294...23,332,094
Ensembl chrNW_004624760:23,249,730...23,332,198 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:22164254) MGI PMID:22164254 NCBI chrNW_004624752:4,255,829...4,320,257
Ensembl chrNW_004624752:4,255,897...4,320,665 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624758:7,267,024...7,318,930
Ensembl chrNW_004624758:7,268,474...7,317,919 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004624730:38,145,101...38,178,788 JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22164254), (PMID:24797475) MGI PMID:22164254 PMID:24797475 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO (PMID:17452644) MGI PMID:17452644 NCBI chrNW_004624752:9,396,860...9,414,345
Ensembl chrNW_004624752:9,396,860...9,415,462 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO (PMID:14718568) MGI PMID:14718568 NCBI chrNW_004624730:9,916,717...9,994,666
Ensembl chrNW_004624730:9,914,140...9,994,775 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chrNW_004624844:484,593...760,155 JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH14orf39 chromosome unknown C14orf39 homolog located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624734:40,656,054...40,701,404
Ensembl chrNW_004624734:40,656,132...40,702,148 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chrNW_004624926:405,354...422,492
Ensembl chrNW_004624926:407,362...419,566 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254)
(MGI:3581466|PMID:15944401), (PMID:22164254)		 HGNC-UCL
MGI		 PMID:15944401 PMID:22164254 MGI:3581466 NCBI chrNW_004624737:12,290,317...12,297,823
Ensembl chrNW_004624737:12,290,276...12,297,924 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254), (PMID:22854038) HGNC-UCL PMID:15944401 PMID:22164254 PMID:22854038 MGI:3581466 NCBI chrNW_004624901:478,860...491,577 JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in ISO (MGI:5008660|PMID:21637789), (PMID:22164254)
(PMID:21637789), (PMID:22164254)		 UniProt PMID:21637789 PMID:22164254 MGI:5008660 NCBI chrNW_004624752:204,242...235,081
Ensembl chrNW_004624752:218,587...234,971 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:12584241), (PMID:23133398) MGI PMID:12584241 PMID:23133398 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Tex12 testis expressed 12 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624784:7,317,642...7,324,128
Ensembl chrNW_004624784:7,317,507...7,322,619 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624740:5,606,828...5,617,848
Ensembl chrNW_004624740:5,606,129...5,618,092 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624759:19,994,660...20,001,545
Ensembl chrNW_004624759:19,994,696...20,001,541 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of IEA TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624767:19,123,710...19,180,505
Ensembl chrNW_004624767:19,124,517...19,176,231 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624747:21,360,253...21,399,223
Ensembl chrNW_004624747:21,360,240...21,399,075 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in ISO (PMID:17291760), (PMID:17696610), (PMID:21743440), (PMID:28031483), (PMID:30718482), (PMID:31839538) MGI PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:26,642,800...26,677,187
Ensembl chrNW_004624734:26,642,946...26,674,315 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) UniProt PMID:10728666 NCBI chrNW_004624768:17,422,267...17,522,894
Ensembl chrNW_004624768:17,421,291...17,522,799 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004624795:1,186,043...1,238,986
Ensembl chrNW_004624795:1,188,136...1,241,964 		JBrowse link
G Brca2 BRCA2 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004624776:5,497,552...5,573,465
Ensembl chrNW_004624776:5,497,779...5,550,993 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:30718482) MGI PMID:30718482 NCBI chrNW_004624752:9,547,327...9,585,549
Ensembl chrNW_004624752:9,548,015...9,585,958 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) MGI PMID:19283064 NCBI chrNW_004624926:405,354...422,492
Ensembl chrNW_004624926:407,362...419,566 		JBrowse link
G Kash5 KASH domain containing 5 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624832:4,783,593...4,806,025
Ensembl chrNW_004624832:4,783,766...4,803,325 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in ISO (PMID:20551173) MGI PMID:20551173 NCBI chrNW_004624819:4,629,655...4,779,472
Ensembl chrNW_004624819:4,662,800...4,838,842 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:2,486,612...2,542,452
Ensembl chrNW_004624741:2,485,471...2,542,500 		JBrowse link
G Rad51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:7,957,175...7,983,078
Ensembl chrNW_004624804:7,957,253...7,983,619 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,361,345...8,369,356
Ensembl chrNW_004624820:8,361,400...8,368,347 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chrNW_004624786:4,547,889...4,604,605
Ensembl chrNW_004624786:4,547,962...4,604,290 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004624909:617,015...668,513
Ensembl chrNW_004624909:630,062...668,512 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:15870106), (PMID:22711701) MGI PMID:15870106 PMID:22711701 NCBI chrNW_004624752:4,255,829...4,320,257
Ensembl chrNW_004624752:4,255,897...4,320,665 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:35,698,722...35,730,854
Ensembl chrNW_004624737:35,694,566...35,730,829 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22711701) MGI PMID:22711701 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)		 UniProt
MGI		 PMID:9933407 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 RGD:11035335 NCBI chrNW_004624741:26,108,446...26,208,184
Ensembl chrNW_004624741:26,122,385...26,203,154 		JBrowse link
G Sycp2l synaptonemal complex protein 2 like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:14,999,209...15,084,967
Ensembl chrNW_004624756:14,996,868...15,084,285 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... MGI:1352918 RGD:11035335 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004624742:21,098,102...21,167,472
Ensembl chrNW_004624742:21,098,101...21,167,398 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624825:4,842,246...4,860,758
Ensembl chrNW_004624825:4,853,388...4,860,217 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) located_in ISO (MGI:2662793|PMID:12764197) UniProt PMID:12764197 MGI:2662793 NCBI chrNW_004624740:14,369,214...14,400,560
Ensembl chrNW_004624740:14,369,164...14,400,480 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004624772:18,379,154...18,403,456
Ensembl chrNW_004624772:18,379,745...18,403,745 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004624747:6,388,679...6,493,583
Ensembl chrNW_004624747:6,388,710...6,494,967 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:36,476,372...36,478,548 JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chrNW_004624926:405,354...422,492
Ensembl chrNW_004624926:407,362...419,566 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004624875:2,871,944...2,907,757
Ensembl chrNW_004624875:2,872,357...2,893,967 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO PMID:16968740
(PMID:15467367), (PMID:16260499)		 MGI PMID:15467367 PMID:16260499 PMID:16968740 RGD:8554354 NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
G Mlh3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:26,642,800...26,677,187
Ensembl chrNW_004624734:26,642,946...26,674,315 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) MGI PMID:10809667 PMID:16260499 NCBI chrNW_004624742:21,098,102...21,167,472
Ensembl chrNW_004624742:21,098,101...21,167,398 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chrNW_004624754:24,453,750...24,477,574
Ensembl chrNW_004624754:24,453,902...24,473,051 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chrNW_004624795:1,943,113...1,947,365
Ensembl chrNW_004624795:1,943,300...1,947,459 		JBrowse link
G Plk1 polo like kinase 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004624782:8,811,593...8,823,060
Ensembl chrNW_004624782:8,811,616...8,826,749 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,361,345...8,369,356
Ensembl chrNW_004624820:8,361,400...8,368,347 		JBrowse link
G Rnf212 ring finger protein 212 located_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624755:26,081,943...26,120,967
Ensembl chrNW_004624755:26,082,378...26,120,655 		JBrowse link
G Rnf212b ring finger protein 212B located_in ISO (PMID:38865271) UniProt PMID:38865271 NCBI chrNW_004624820:9,268,727...9,322,963 JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004624909:617,015...668,513
Ensembl chrNW_004624909:630,062...668,512 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:11564881), (PMID:16968740) MGI PMID:11564881 PMID:16968740 NCBI chrNW_004624752:4,255,829...4,320,257
Ensembl chrNW_004624752:4,255,897...4,320,665 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004624737:35,698,722...35,730,854
Ensembl chrNW_004624737:35,694,566...35,730,829 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:10698974) MGI PMID:10698974 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO PMID:16968740 MGI PMID:16968740 RGD:8554354 NCBI chrNW_004624737:12,290,317...12,297,823
Ensembl chrNW_004624737:12,290,276...12,297,924 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (MGI:3579731|PMID:15937223)
(PMID:12815066), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)		 UniProt
MGI
RGD		 PMID:8660935 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 More... MGI:3579731 RGD:8554354 RGD:9686370 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chrNW_004624741:26,108,446...26,208,184
Ensembl chrNW_004624741:26,122,385...26,203,154 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
G Syn1 synapsin I located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624978:110,640...179,910
Ensembl chrNW_004624978:110,506...180,568 		JBrowse link
G Tex12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:7,317,642...7,324,128
Ensembl chrNW_004624784:7,317,507...7,322,619 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004624740:16,706,695...16,734,142
Ensembl chrNW_004624740:16,707,999...16,732,537 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701) RGD
MGI		 PMID:1464329 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 RGD:729937 NCBI chrNW_004624772:10,524,656...10,699,894
Ensembl chrNW_004624772:10,525,203...10,699,560 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004624750:6,345,112...6,358,724
Ensembl chrNW_004624750:6,349,400...6,358,180 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15764
    cellular anatomical entity 15664
      organelle 11445
        non-membrane-bounded organelle 4240
          intracellular non-membrane-bounded organelle 4240
            chromosome 1200
              nuclear chromosome 212
                condensed nuclear chromosome 76
                  checkpoint clamp complex 4
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 39
Path 2
Term Annotations click to browse term
  cellular_component 15764
    cellular anatomical entity 15664
      organelle 11445
        intracellular organelle 11053
          intracellular membrane-bounded organelle 9988
            nucleus 6073
              nuclear lumen 3678
                nuclear chromosome 212
                  condensed nuclear chromosome 76
                    checkpoint clamp complex 4
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 39
paths to the root