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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


show annotations for term's descendants           Sort by:
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in IDA (PMID:1864459) MGI PMID:1864459 NCBI chr19:53,128,874...53,235,518
Ensembl chr19:53,128,874...53,235,830 		JBrowse link
G Ago3 argonaute RISC catalytic subunit 3 located_in IDA (PMID:22863743) MGI PMID:22863743 NCBI chr 4:126,220,797...126,323,360
Ensembl chr 4:126,225,497...126,323,349 		JBrowse link
G Atf6b activating transcription factor 6 beta located_in ISS UniProt GO_REF:0000024 NCBI chr17:34,866,120...34,874,048
Ensembl chr17:34,866,120...34,874,048 		JBrowse link
G Brca1 breast cancer 1, early onset located_in IDA (PMID:20551173), (PMID:26490168) MGI PMID:20551173 PMID:26490168 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781 		JBrowse link
G Brd4 bromodomain containing 4 located_in IDA
ISO		 (PMID:10938129), (PMID:16339075), (PMID:18039861) MGI PMID:10938129 PMID:16339075 PMID:18039861 GO_REF:0000008 NCBI chr17:32,415,246...32,503,717
Ensembl chr17:32,415,248...32,503,696 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in IDA (PMID:24891606) MGI PMID:24891606 NCBI chr14:51,026,706...51,033,185
Ensembl chr14:51,026,705...51,045,189 		JBrowse link
G Cdx2 caudal type homeobox 2 located_in IDA (PMID:15509711) MGI PMID:15509711 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO
ISS		 MGI
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 9:36,619,935...36,637,897
Ensembl chr 9:36,619,778...36,638,361 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 8:123,931,000...123,939,527
Ensembl chr 8:123,931,003...123,939,502 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in
is_active_in		 IDA
IBA		 (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:22711701), (PMID:27760146) MGI
GO_Central		 PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 NCBI chr15:79,445,698...79,489,362
Ensembl chr15:79,445,698...79,489,310 		JBrowse link
G Dnmt3l DNA methyltransferase 3-like located_in IDA (PMID:16543361) MGI PMID:16543361 NCBI chr10:77,878,121...77,899,456
Ensembl chr10:77,877,781...77,899,456 		JBrowse link
G H1f6 H1.6 linker histone, cluster member located_in IDA (PMID:18316482) MGI PMID:18316482 NCBI chr13:23,879,794...23,880,528
Ensembl chr13:23,879,797...23,880,708 		JBrowse link
G H2ax H2A.X variant histone located_in IDA (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) MGI PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr 9:44,246,012...44,247,374
Ensembl chr 9:44,245,991...44,247,374 		JBrowse link
G Hmg20b high mobility group 20B located_in ISO (PMID:11207365) MGI PMID:11207365 NCBI chr10:81,181,880...81,186,777
Ensembl chr10:81,181,882...81,186,314 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in IDA (PMID:22164254), (PMID:22530760) MGI PMID:22164254 PMID:22530760 NCBI chr 3:95,466,988...95,495,174
Ensembl chr 3:95,466,988...95,494,982 		JBrowse link
G Iho1 interactor of HORMAD1 1 located_in
is_active_in		 IDA
IBA		 (MGI:5822944|PMID:27723721)
(PMID:27723721)		 UniProt
GO_Central		 PMID:27723721 GO_REF:0000033 MGI:5822944 NCBI chr 9:108,280,691...108,309,040
Ensembl chr 9:108,280,810...108,305,683 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:163,589,711...163,744,676
Ensembl chr 1:163,607,152...163,744,678 		JBrowse link
G Lig3 ligase III, DNA, ATP-dependent located_in IDA (PMID:9001252) MGI PMID:9001252 NCBI chr11:82,671,977...82,695,100
Ensembl chr11:82,671,934...82,695,100 		JBrowse link
G Lrpprc leucine-rich PPR-motif containing located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:85,012,675...85,098,214
Ensembl chr17:85,012,675...85,098,217 		JBrowse link
G Mlh1 mutL homolog 1 located_in IDA (PMID:18316482), (PMID:23555294), (PMID:24891606) MGI PMID:18316482 PMID:23555294 PMID:24891606 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859 		JBrowse link
G Mlh3 mutL homolog 3 located_in IDA (PMID:24891606) MGI PMID:24891606 NCBI chr12:85,281,240...85,317,421
Ensembl chr12:85,281,294...85,317,373 		JBrowse link
G Mre11a MRE11A homolog A, double strand break repair nuclease located_in ISO sex vesicles/chromatin of XY bivalent MGI
RGD		 PMID:10855503 GO_REF:0000096 MGI:4417868 RGD:2300257 NCBI chr 9:14,695,971...14,748,421
Ensembl chr 9:14,695,950...14,748,419 		JBrowse link
G Msh4 mutS homolog 4 located_in IDA (PMID:18316482), (PMID:22164254), (PMID:23555294) MGI PMID:18316482 PMID:22164254 PMID:23555294 NCBI chr 3:153,562,783...153,611,495
Ensembl chr 3:153,562,786...153,611,775 		JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in IDA (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 6:125,144,970...125,169,062
Ensembl chr 6:125,144,970...125,168,664 		JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in IDA (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 9:26,941,455...27,008,667
Ensembl chr 9:26,941,471...27,006,611 		JBrowse link
G Ncapg non-SMC condensin I complex, subunit G located_in IDA (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 5:45,827,212...45,858,491
Ensembl chr 5:45,827,261...45,857,888 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 located_in IDA (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr12:116,368,969...116,427,152
Ensembl chr12:116,369,022...116,427,351 		JBrowse link
G Ncaph non-SMC condensin I complex, subunit H located_in IDA (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 2:126,945,729...126,975,857
Ensembl chr 2:126,945,729...126,975,874 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 located_in IDA (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr15:89,239,920...89,257,030
Ensembl chr15:89,239,922...89,257,029 		JBrowse link
G Nek2 NIMA (never in mitosis gene a)-related expressed kinase 2 located_in IDA (PMID:15479717) MGI PMID:15479717 NCBI chr 1:191,553,622...191,565,161
Ensembl chr 1:191,553,556...191,565,162 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 1:118,249,573...118,261,561
Ensembl chr 1:118,249,569...118,261,552 		JBrowse link
G Nol6 nucleolar protein family 6 (RNA-associated) located_in IDA (MGI:2179879|PMID:11895476)
(PMID:11895476)		 UniProt PMID:11895476 MGI:2179879 NCBI chr 4:41,114,427...41,124,450
Ensembl chr 4:41,114,427...41,124,455 		JBrowse link
G Psmc3ip proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:100,981,238...100,986,261
Ensembl chr11:100,982,649...100,986,262 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in IDA (PMID:24797475) MGI PMID:24797475 NCBI chr15:51,826,000...51,856,934
Ensembl chr15:51,825,636...51,855,143 		JBrowse link
G Rad21l RAD21-like (S. pombe) located_in IDA (PMID:24797475) MGI PMID:24797475 NCBI chr 2:151,486,286...151,512,542
Ensembl chr 2:151,487,324...151,510,453 		JBrowse link
G Rad50 RAD50 double strand break repair protein located_in
is_active_in		 ISO
IBA		 sex vesicles/chromatin of XY bivalent MGI
GO_Central
RGD		 PMID:10855503 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2300257 NCBI chr11:53,540,346...53,598,146
Ensembl chr11:53,540,346...53,598,146 		JBrowse link
G Rad51 RAD51 recombinase located_in
is_active_in		 IDA
IBA		 (PMID:14668445), (PMID:18283110), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:23555294), (PMID:24891606), (PMID:26490168), (PMID:27760146) MGI
GO_Central		 PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... GO_REF:0000033 NCBI chr 2:118,943,295...118,966,554
Ensembl chr 2:118,943,274...118,977,926 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 4:132,059,230...132,073,061
Ensembl chr 4:132,059,230...132,080,916 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IDA (PMID:18084284), (PMID:22164254), (PMID:24797475) MGI PMID:18084284 PMID:22164254 PMID:24797475 NCBI chr14:55,855,459...55,862,852
Ensembl chr14:55,855,494...55,862,852 		JBrowse link
G Rpa1 replication protein A1 located_in IDA (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr11:75,191,085...75,239,478
Ensembl chr11:75,188,992...75,239,150 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 located_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 1:9,615,633...9,617,680
Ensembl chr 1:9,615,633...9,617,680 		JBrowse link
G Rsph1 radial spoke head 1 homolog (Chlamydomonas) located_in IDA (PMID:9578619) MGI PMID:9578619 NCBI chr17:31,473,993...31,496,270
Ensembl chr17:31,473,993...31,496,357 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in
is_active_in		 IDA
IBA		 (MGI:6159552|PMID:29742103) UniProt
GO_Central		 PMID:29742103 GO_REF:0000033 MGI:6159552 NCBI chr 4:59,041,984...59,138,983
Ensembl chr 4:59,043,753...59,138,983 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in IDA (PMID:22164254) MGI PMID:22164254 NCBI chr15:84,948,890...85,016,158
Ensembl chr15:84,948,890...85,016,165 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in IDA (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 4:52,438,966...52,488,365
Ensembl chr 4:52,439,243...52,488,260 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in IDA (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 3:68,912,071...68,941,956
Ensembl chr 3:68,912,071...68,941,956 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in IDA (PMID:22164254), (PMID:24797475) MGI PMID:22164254 PMID:24797475 NCBI chr 5:138,270,757...138,310,659
Ensembl chr 5:138,278,502...138,310,655 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in IDA
ISO		 (PMID:17452644) MGI PMID:17452644 GO_REF:0000008 NCBI chr15:79,608,269...79,626,757
Ensembl chr15:79,608,271...79,626,737 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr 3:102,725,815...102,843,416
Ensembl chr 3:102,725,815...102,843,416 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr10:88,295,449...88,309,098
Ensembl chr10:88,295,431...88,309,098 		JBrowse link
G Tex11 testis expressed gene 11 located_in IDA (PMID:18316482) MGI PMID:18316482 NCBI chr  X:99,882,254...100,103,245
Ensembl chr  X:99,882,254...100,103,273 		JBrowse link
G Topbp1 topoisomerase (DNA) II binding protein 1 located_in IDA (PMID:14718568) MGI PMID:14718568 NCBI chr 9:103,182,351...103,227,627
Ensembl chr 9:103,182,414...103,227,627 		JBrowse link
G Ttn titin located_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 2:76,534,324...76,812,901
Ensembl chr 2:76,534,324...76,812,891 		JBrowse link
G Tubg1 tubulin, gamma 1 located_in IDA (MGI:3688382|PMID:15007207)
(PMID:15007207)		 UniProt PMID:15007207 MGI:3688382 NCBI chr11:101,010,725...101,017,249
Ensembl chr11:101,010,764...101,017,245 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4930447C04Rik RIKEN cDNA 4930447C04 gene located_in
is_active_in		 IDA
IBA		 (MGI:5822939|PMID:27796301)
(PMID:27796301)		 UniProt
GO_Central		 PMID:27796301 GO_REF:0000033 MGI:5822939 NCBI chr12:72,926,967...72,964,742
Ensembl chr12:72,927,883...72,987,548 		JBrowse link
G Incenp inner centromere protein located_in IDA (PMID:12584241) MGI PMID:12584241 NCBI chr19:9,849,659...9,876,853
Ensembl chr19:9,849,660...9,876,915 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in IDA (MGI:3581466|PMID:15944401), (PMID:22164254)
(PMID:15944401), (PMID:22164254)		 MGI
HGNC-UCL		 PMID:15944401 PMID:22164254 MGI:3581466 NCBI chr 7:140,357,142...140,367,767
Ensembl chr 7:140,357,142...140,367,765 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in
is_active_in		 IDA
IBA		 (MGI:3581466|PMID:15944401), (PMID:22164254), (PMID:22854038)
(PMID:15944401), (PMID:22164254), (PMID:22854038)		 HGNC-UCL
MGI
GO_Central		 PMID:15944401 PMID:22164254 PMID:22854038 GO_REF:0000033 MGI:3581466 NCBI chr 8:85,598,740...85,614,075
Ensembl chr 8:85,598,740...85,614,850 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 is_active_in
located_in		 IBA
IDA		 (PMID:21637789), (PMID:22164254)
(MGI:5008660|PMID:21637789), (PMID:22164254)		 GO_Central
UniProt		 PMID:21637789 PMID:22164254 GO_REF:0000033 MGI:5008660 NCBI chr15:89,274,377...89,294,706
Ensembl chr15:89,274,377...89,294,706 		JBrowse link
G Sycp1 synaptonemal complex protein 1 is_active_in
located_in		 IBA
IDA		 (PMID:12584241), (PMID:23133398) GO_Central
MGI		 PMID:12584241 PMID:23133398 GO_REF:0000033 NCBI chr 3:102,725,815...102,843,416
Ensembl chr 3:102,725,815...102,843,416 		JBrowse link
G Tex11 testis expressed gene 11 is_active_in
located_in		 IBA
IDA		 (PMID:18316482) GO_Central
MGI		 PMID:18316482 GO_REF:0000033 NCBI chr  X:99,882,254...100,103,245
Ensembl chr  X:99,882,254...100,103,273 		JBrowse link
G Tex12 testis expressed 12 is_active_in
located_in		 IBA
IDA		 (PMID:16968740), (PMID:22164254), (PMID:22854038)
(MGI:3664716|PMID:16968740), (PMID:22164254), (PMID:22854038)		 GO_Central
MGI		 PMID:16968740 PMID:22164254 PMID:22854038 GO_REF:0000033 MGI:3664716 NCBI chr 9:50,468,448...50,472,568
Ensembl chr 9:50,468,119...50,472,625 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:8,943,137...8,961,240
Ensembl chr11:8,943,137...8,961,191 		JBrowse link
G Hus1b HUS1 checkpoint clamp component B part_of IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr13:31,130,559...31,131,744
Ensembl chr13:31,130,556...31,131,742 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of ISO
IBA
IEA		 MGI
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr15:10,486,104...10,499,149
Ensembl chr15:10,486,104...10,499,149 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of ISO
IBA
IEA		 MGI
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr19:4,245,195...4,251,710
Ensembl chr19:4,245,195...4,251,661 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 5:122,461,286...122,492,297
Ensembl chr 5:122,461,286...122,492,296 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IDA (PMID:17291760), (PMID:17696610), (PMID:21743440), (PMID:28031483), (PMID:30718482), (PMID:31839538) MGI PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859 		JBrowse link
G Mlh3 mutL homolog 3 located_in IDA (PMID:12091911), (PMID:17696610) MGI PMID:12091911 PMID:17696610 NCBI chr12:85,281,240...85,317,421
Ensembl chr12:85,281,294...85,317,373 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IDA (PMID:27760146) MGI PMID:27760146 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859 		JBrowse link
G Nat8 N-acetyltransferase 8 (GCN5-related) NOT|located_in ISA (PMID:11397015) MGI PMID:11397015 NCBI chr 6:85,807,369...85,813,839
Ensembl chr 6:85,807,370...85,809,064 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm Bloom syndrome, RecQ like helicase located_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Brca1 breast cancer 1, early onset located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781 		JBrowse link
G Brca2 breast cancer 2, early onset located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chr 5:150,445,759...150,493,612
Ensembl chr 5:150,446,095...150,493,794 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in IDA (PMID:30718482) MGI PMID:30718482 NCBI chr15:79,445,698...79,489,362
Ensembl chr15:79,445,698...79,489,310 		JBrowse link
G Incenp inner centromere protein located_in IDA (PMID:19283064) MGI PMID:19283064 NCBI chr19:9,849,659...9,876,853
Ensembl chr19:9,849,660...9,876,915 		JBrowse link
G Kash5 KASH domain containing 5 is_active_in
located_in		 IBA
IDA		 (PMID:24062341) GO_Central
MGI		 PMID:24062341 GO_REF:0000033 NCBI chr 7:44,833,043...44,854,344
Ensembl chr 7:44,833,048...44,854,316 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in
is_active_in		 IDA
IBA		 (PMID:20551173) MGI
GO_Central		 PMID:20551173 GO_REF:0000033 NCBI chr 9:81,745,723...82,088,060
Ensembl chr 9:81,745,723...82,088,060 		JBrowse link
G Rad21l RAD21-like (S. pombe) located_in IDA (PMID:21743440) MGI PMID:21743440 NCBI chr 2:151,486,286...151,512,542
Ensembl chr 2:151,487,324...151,510,453 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO
IDA		 (PMID:9774970)
(PMID:18694567), (PMID:21743440)		 MGI PMID:9774970 PMID:18694567 PMID:21743440 NCBI chr 2:118,943,295...118,966,554
Ensembl chr 2:118,943,274...118,977,926 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IDA (PMID:15870106), (PMID:32328639) MGI PMID:15870106 PMID:32328639 NCBI chr14:55,855,459...55,862,852
Ensembl chr14:55,855,494...55,862,852 		JBrowse link
G Rpa1 replication protein A1 located_in IDA (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr11:75,191,085...75,239,478
Ensembl chr11:75,188,992...75,239,150 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A located_in ISO MMO:0000662 RGD
GO_Central
MGI		 PMID:10652260 GO_REF:0000096 MGI:4417868 RGD:1331378 NCBI chr  X:150,799,386...150,844,969
Ensembl chr  X:150,799,424...150,845,690 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in IDA (PMID:15870106), (PMID:22711701) MGI PMID:15870106 PMID:22711701 NCBI chr15:84,948,890...85,016,158
Ensembl chr15:84,948,890...85,016,165 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IDA (PMID:15870106), (PMID:22711701), (PMID:32328639) MGI PMID:15870106 PMID:22711701 PMID:32328639 NCBI chr19:53,588,827...53,634,262
Ensembl chr19:53,588,829...53,634,264 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in IDA (PMID:22711701) MGI PMID:22711701 NCBI chr 5:138,270,757...138,310,659
Ensembl chr 5:138,278,502...138,310,655 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in TAS (MGI:3581466|PMID:15944401)
(PMID:15944401)		 HGNC-UCL PMID:15944401 MGI:3581466 NCBI chr 3:102,725,815...102,843,416
Ensembl chr 3:102,725,815...102,843,416 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 ISO
IBA
IDA		 (PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398) MGI
GO_Central		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr 2:177,987,088...178,051,580
Ensembl chr 2:177,987,086...178,049,478 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like is_active_in
located_in		 IBA
IDA		 (PMID:26362258) GO_Central
MGI		 PMID:26362258 GO_REF:0000033 NCBI chr13:41,267,895...41,327,827
Ensembl chr13:41,267,783...41,327,827 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO
IDA		 (PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 MGI
GO_Central		 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... GO_REF:0000096 MGI:1352918 MGI:4417868 NCBI chr10:88,295,449...88,309,098
Ensembl chr10:88,295,431...88,309,098 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in IDA (PMID:27760146) MGI PMID:27760146 NCBI chr 3:153,562,783...153,611,495
Ensembl chr 3:153,562,786...153,611,775 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 1700013H16Rik RIKEN cDNA 1700013H16 gene is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:52,744,868...52,759,936
Ensembl chr  X:52,744,868...52,759,798 		JBrowse link
G 1700040F15Rik RIKEN cDNA 1700040F15 gene is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:71,704,736...71,729,300
Ensembl chr  Y:71,703,312...71,729,495 		JBrowse link
G 3830403N18Rik RIKEN cDNA 3830403N18 gene is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:54,884,612...55,198,856
Ensembl chr  X:55,181,932...55,198,858 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in IDA (MGI:5545848|PMID:24390283)
(PMID:24390283)		 UniProt PMID:24390283 MGI:5545848 NCBI chr14:51,026,706...51,033,185
Ensembl chr14:51,026,705...51,045,189 		JBrowse link
G Fkbp6 FK506 binding protein 6 located_in IDA (MGI:2662793|PMID:12764197)
(PMID:12764197)		 UniProt PMID:12764197 MGI:2662793 NCBI chr 5:135,320,558...135,380,662
Ensembl chr 5:135,320,558...135,378,898 		JBrowse link
G Gm10230 predicted gene 10230 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:27,357,518...27,380,426
Ensembl chr  X:27,357,515...27,380,366 		JBrowse link
G Gm10488 predicted gene 10488 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:29,725,433...29,748,281
Ensembl chr  X:29,725,433...29,748,281 		JBrowse link
G Gm1140 predicted gene 1140 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:66,725,827...66,738,064
Ensembl chr  X:66,726,506...66,737,168 		JBrowse link
G Gm14525 predicted gene 14525 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:26,628,080...26,657,938
Ensembl chr  X:26,628,077...26,657,938 		JBrowse link
G Gm16430 predicted gene 16430 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:53,624,136...53,640,986
Ensembl chr  X:53,624,178...53,640,986 		JBrowse link
G Gm1993 predicted gene 1993 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:25,503,801...25,525,749
Ensembl chr  X:25,503,596...25,525,752 		JBrowse link
G Gm2012 predicted gene 2012 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:26,156,182...26,186,623
Ensembl chr  X:26,155,978...26,186,655 		JBrowse link
G Gm2030 predicted gene 2030 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:26,242,499...26,265,344
Ensembl chr  X:26,242,277...26,265,344 		JBrowse link
G Gm20736 predicted gene, 20736 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:65,386,218...65,412,441
Ensembl chr  Y:65,386,218...65,412,445 		JBrowse link
G Gm20817 predicted gene, 20817 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:68,817,865...68,843,997 JBrowse link
G Gm20820 predicted gene, 20820 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:86,073,041...86,099,221 JBrowse link
G Gm20824 predicted gene, 20824 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:8,257,907...8,284,105
Ensembl chr  Y:8,257,907...8,284,105 		JBrowse link
G Gm20843 predicted gene, 20843 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:72,232,330...72,256,967
Ensembl chr  Y:72,232,132...72,258,387 		JBrowse link
G Gm20890 predicted gene, 20890 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:26,706,146...26,730,721
Ensembl chr  Y:26,705,950...26,732,144 		JBrowse link
G Gm20911 predicted gene, 20911 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:81,470,698...81,495,159
Ensembl chr  Y:81,469,272...81,495,356 		JBrowse link
G Gm21095 predicted gene, 21095 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:84,108,548...84,134,763 JBrowse link
G Gm21117 predicted gene, 21117 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:51,123,225...51,147,865
Ensembl chr  Y:51,121,799...51,148,063 		JBrowse link
G Gm21294 predicted gene, 21294 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:89,064,075...89,090,284 JBrowse link
G Gm21627 predicted gene, 21627 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:63,238,379...63,262,981
Ensembl chr  Y:63,236,955...63,263,172 		JBrowse link
G Gm21760 predicted gene, 21760 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:80,145,048...80,171,244 JBrowse link
G Gm21858 predicted gene, 21858 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:55,728,335...55,754,487 JBrowse link
G Gm21865 predicted gene, 21865 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:40,246,331...40,270,796
Ensembl chr  Y:40,246,135...40,272,248 		JBrowse link
G Gm21996 predicted gene 21996 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:89,711,590...89,756,819
Ensembl chr  Y:89,724,693...89,756,801 		JBrowse link
G Gm28102 predicted gene 28102 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:88,064,584...88,090,763 JBrowse link
G Gm28510 predicted gene 28510 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:10,412,737...10,444,691 JBrowse link
G Gm28576 predicted gene 28576 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:7,724,389...7,749,003
Ensembl chr  Y:7,722,941...7,749,195 		JBrowse link
G Gm28870 predicted gene 28870 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:50,093,855...50,118,710 JBrowse link
G Gm28919 predicted gene 28919 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:6,583,546...6,615,511 JBrowse link
G Gm28961 predicted gene 28961 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:57,714,225...57,740,460 JBrowse link
G Gm29276 predicted gene 29276 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  Y:42,524,547...42,537,580
Ensembl chr  Y:42,505,428...42,537,595 		JBrowse link
G Gm29554 predicted gene 29554 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:12,274,635...12,306,702 JBrowse link
G Gm29866 predicted gene, 29866 is_active_in IBA GO_Central GO_REF:0000033 Ensembl chr  Y:20,967,477...20,993,657 JBrowse link
G Gm4297 predicted gene 4297 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:24,418,489...24,439,544
Ensembl chr  X:24,418,489...24,441,134 		JBrowse link
G Gm5168 predicted gene 5168 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:25,983,498...26,006,341
Ensembl chr  X:25,983,514...26,006,341 		JBrowse link
G Gm5169 predicted gene 5169 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:25,232,787...25,256,755
Ensembl chr  X:25,232,783...25,256,755 		JBrowse link
G Gm5934 predicted gene 5934 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:24,340,547...24,365,402
Ensembl chr  X:24,340,547...24,366,999 		JBrowse link
G Gm5935 predicted gene 5935 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:24,619,401...24,641,403
Ensembl chr  X:24,619,401...24,641,403 		JBrowse link
G Gm6121 predicted gene 6121 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:26,868,043...26,890,969
Ensembl chr  X:26,868,043...26,890,997 		JBrowse link
G Gm773 predicted gene 773 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:55,235,187...55,258,246
Ensembl chr  X:55,235,187...55,258,241 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in IDA (PMID:22854038) MGI PMID:22854038 NCBI chr 3:95,466,988...95,495,174
Ensembl chr 3:95,466,988...95,494,982 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in IDA (PMID:22854038) MGI PMID:22854038 NCBI chr11:4,295,801...4,391,215
Ensembl chr11:4,295,814...4,391,105 		JBrowse link
G Hspa2 heat shock protein 2 located_in IDA (PMID:8622925) MGI PMID:8622925 NCBI chr12:76,450,688...76,453,712
Ensembl chr12:76,450,950...76,453,712 		JBrowse link
G Incenp inner centromere protein located_in IDA (PMID:12584241) MGI PMID:12584241 NCBI chr19:9,849,659...9,876,853
Ensembl chr19:9,849,660...9,876,915 		JBrowse link
G Lig3 ligase III, DNA, ATP-dependent located_in IDA (PMID:9001252) MGI PMID:9001252 NCBI chr11:82,671,977...82,695,100
Ensembl chr11:82,671,934...82,695,100 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISS
IDA		 (PMID:16968740)
(PMID:15467367), (PMID:16260499)		 MGI PMID:15467367 PMID:16260499 PMID:16968740 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859 		JBrowse link
G Mlh3 mutL homolog 3 located_in IDA (PMID:15467367), (PMID:16260499) MGI PMID:15467367 PMID:16260499 NCBI chr12:85,281,240...85,317,421
Ensembl chr12:85,281,294...85,317,373 		JBrowse link
G Msh4 mutS homolog 4 located_in IDA
ISS		 (PMID:10809667), (PMID:16260499)
(PMID:16968740)		 MGI PMID:10809667 PMID:16260499 PMID:16968740 NCBI chr 3:153,562,783...153,611,495
Ensembl chr 3:153,562,786...153,611,775 		JBrowse link
G Msh5 mutS homolog 5 located_in IDA (PMID:16260499) MGI PMID:16260499 NCBI chr17:35,247,581...35,267,842
Ensembl chr17:35,247,581...35,265,721 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (non-enzymatic) located_in ISO MGI
GO_Central
RGD		 PMID:1363622 GO_REF:0000096 MGI:4417868 RGD:633987 NCBI chr11:100,299,293...100,305,542
Ensembl chr11:100,299,282...100,305,662 		JBrowse link
G Plk1 polo like kinase 1 located_in IDA (PMID:22854038) MGI PMID:22854038 NCBI chr 7:121,758,658...121,769,107
Ensembl chr 7:121,758,662...121,769,096 		JBrowse link
G Polb polymerase (DNA directed), beta located_in TAS (PMID:10655502) MGI PMID:10655502 NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
G Rad51 RAD51 recombinase located_in TAS (MGI:3687414|PMID:8816780)
(PMID:8816780)		 UniProt PMID:8816780 MGI:3687414 NCBI chr 2:118,943,295...118,966,554
Ensembl chr 2:118,943,274...118,977,926 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in IDA (PMID:12759374) MGI PMID:12759374 NCBI chr14:55,855,459...55,862,852
Ensembl chr14:55,855,494...55,862,852 		JBrowse link
G Rnf212 ring finger protein 212 located_in IDA (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283) UniProt PMID:23396135 PMID:24390283 MGI:5487470 MGI:5545848 NCBI chr 5:108,875,971...108,922,933
Ensembl chr 5:108,877,156...108,922,848 		JBrowse link
G Rnf212b ring finger protein 212B located_in IEA
IDA		 (PMID:38865271) UniProt PMID:38865271 GO_REF:0000002 MGI:2152098 NCBI chr14:55,020,798...55,091,567
Ensembl chr14:55,051,598...55,091,565 		JBrowse link
G Slx Sycp3 like X-linked is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:26,477,957...26,500,865
Ensembl chr  X:26,477,956...26,500,865 		JBrowse link
G Slxl1 Slx-like 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:54,272,236...54,289,096
Ensembl chr  X:54,272,236...54,289,083 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A located_in ISO MMO:0000679 RGD
MGI		 PMID:10652260 GO_REF:0000096 MGI:4417868 RGD:1331378 NCBI chr  X:150,799,386...150,844,969
Ensembl chr  X:150,799,424...150,845,690 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in IDA (PMID:11564881), (PMID:16968740) MGI PMID:11564881 PMID:16968740 NCBI chr15:84,948,890...85,016,158
Ensembl chr15:84,948,890...85,016,165 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in ISO MMO:0000679 RGD
MGI		 PMID:10652260 GO_REF:0000096 MGI:4417868 RGD:1331378 NCBI chr19:53,588,827...53,634,262
Ensembl chr19:53,588,829...53,634,264 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in IDA (PMID:10698974) MGI PMID:10698974 NCBI chr 5:138,270,757...138,310,659
Ensembl chr 5:138,278,502...138,310,655 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 is_active_in
located_in		 IBA
ISS		 (PMID:16968740) GO_Central
MGI		 PMID:16968740 GO_REF:0000033 NCBI chr 7:140,357,142...140,367,767
Ensembl chr 7:140,357,142...140,367,765 		JBrowse link
G Syce1l synaptonemal complex central element protein 1 like is_active_in
located_in		 IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:114,369,845...114,382,165
Ensembl chr 8:114,369,845...114,382,165 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in ISS (PMID:16968740) MGI PMID:16968740 NCBI chr 8:85,598,740...85,614,075
Ensembl chr 8:85,598,740...85,614,850 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO
ISS
IDA
IMP		 (PMID:16968740)
(PMID:12815066), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
(MGI:3579731|PMID:15937223)		 MGI
GO_Central
RGD
UniProt		 PMID:8660935 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 More... GO_REF:0000096 MGI:3579731 MGI:4417868 RGD:9686370 NCBI chr 3:102,725,815...102,843,416
Ensembl chr 3:102,725,815...102,843,416 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO
IDA		 (PMID:18316482), (PMID:26362258) MGI
RGD		 PMID:9592139 PMID:18316482 PMID:26362258 GO_REF:0000008 GO_REF:0000096 MGI:4417868 RGD:69387 NCBI chr 2:177,987,088...178,051,580
Ensembl chr 2:177,987,086...178,049,478 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in		 IDA
ISO
IBA		 (PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)
(PMID:9774970)		 MGI
GO_Central		 PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... GO_REF:0000033 NCBI chr10:88,295,449...88,309,098
Ensembl chr10:88,295,431...88,309,098 		JBrowse link
G Syn1 synapsin I located_in IDA (PMID:14736746) MGI PMID:14736746 NCBI chr  X:20,726,750...20,787,157
Ensembl chr  X:20,726,750...20,787,243 		JBrowse link
G Tex11 testis expressed gene 11 located_in IDA (MGI:3797180|PMID:18369460) UniProt PMID:18369460 MGI:3797180 NCBI chr  X:99,882,254...100,103,245
Ensembl chr  X:99,882,254...100,103,273 		JBrowse link
G Tex12 testis expressed 12 located_in ISS
IDA		 (PMID:16968740) MGI PMID:16968740 NCBI chr 9:50,468,448...50,472,568
Ensembl chr 9:50,468,119...50,472,625 		JBrowse link
G Xlr X-linked lymphocyte-regulated is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:52,779,084...52,799,673
Ensembl chr  X:52,779,085...52,799,673 		JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,129,899...72,140,701
Ensembl chr  X:72,129,899...72,140,701 		JBrowse link
G Xlr3b X-linked lymphocyte-regulated 3B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,235,817...72,246,927
Ensembl chr  X:72,235,813...72,246,536 		JBrowse link
G Xlr3c X-linked lymphocyte-regulated 3C is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,298,144...72,309,178
Ensembl chr  X:72,298,146...72,308,996 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,117,949...72,126,133
Ensembl chr  X:72,117,951...72,126,084 		JBrowse link
G Xlr4b X-linked lymphocyte-regulated 4B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,257,928...72,266,059
Ensembl chr  X:72,257,939...72,266,059 		JBrowse link
G Xlr4c X-linked lymphocyte-regulated 4C is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,277,682...72,286,736
Ensembl chr  X:72,277,294...72,286,736 		JBrowse link
G Xlr5a X-linked lymphocyte-regulated 5A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,151,227...72,162,323
Ensembl chr  X:72,151,241...72,336,582 		JBrowse link
G Xlr5b X-linked lymphocyte-regulated 5B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,191,390...72,202,492
Ensembl chr  X:72,192,402...72,202,478 		JBrowse link
G Xlr5c X-linked lymphocyte-regulated 5C is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:72,326,967...72,337,469
Ensembl chr  X:72,326,502...72,336,582 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in IDA (PMID:15870106) MGI PMID:15870106 NCBI chr 5:138,270,757...138,310,659
Ensembl chr 5:138,278,502...138,310,655 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 ISO
IDA
IBA		 (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701) MGI
RGD
GO_Central		 PMID:1464329 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:729937 NCBI chr 3:102,725,815...102,843,416
Ensembl chr 3:102,725,815...102,843,416 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA (PMID:15870106) MGI PMID:15870106 NCBI chr10:88,295,449...88,309,098
Ensembl chr10:88,295,431...88,309,098 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28621
    cellular anatomical entity 19715
      organelle 13702
        non-membrane-bounded organelle 5002
          intracellular non-membrane-bounded organelle 5002
            chromosome 1505
              nuclear chromosome 294
                condensed nuclear chromosome 139
                  checkpoint clamp complex 5
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 3
                  synapsis initiation complex 0
                  synaptonemal structure + 96
Path 2
Term Annotations click to browse term
  cellular_component 28621
    cellular anatomical entity 19715
      organelle 13702
        intracellular organelle 13297
          intracellular membrane-bounded organelle 12151
            nucleus 7540
              nuclear lumen 4403
                nuclear chromosome 294
                  condensed nuclear chromosome 139
                    checkpoint clamp complex 5
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 3
                    synapsis initiation complex 0
                    synaptonemal structure + 96
paths to the root