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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


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condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:109,996,373...110,135,565
Ensembl chr10:109,996,368...110,135,565 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,930,718...36,072,500
Ensembl chr 1:35,930,718...36,072,500 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,044,295...43,170,327
Ensembl chr17:43,044,295...43,170,245 		JBrowse link
G BRD4 bromodomain containing 4 located_in IDA (PMID:10938129) MGI PMID:10938129 NCBI chr19:15,235,519...15,332,539
Ensembl chr19:15,235,519...15,332,545 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:20,311,370...20,333,279
Ensembl chr14:20,311,368...20,333,312 		JBrowse link
G CDX2 caudal type homeobox 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:27,960,918...27,969,315
Ensembl chr13:27,960,918...27,969,315 		JBrowse link
G CHEK1 checkpoint kinase 1 located_in IDA (PMID:9382850) UniProt PMID:9382850 NCBI chr11:125,625,136...125,681,124
Ensembl chr11:125,625,163...125,676,255 		JBrowse link
G CHMP1A charged multivesicular body protein 1A located_in IDA (PMID:11559747) UniProt PMID:11559747 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in
is_active_in		 TAS
IBA
IEA		 (PMID:8602360) PINC
GO_Central
Ensembl		 PMID:8602360 GO_REF:0000033 GO_REF:0000107 NCBI chr22:38,509,147...38,570,183
Ensembl chr22:38,518,948...38,570,204 		JBrowse link
G DNMT3L DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chr21:44,246,339...44,261,897
Ensembl chr21:44,246,339...44,262,216 		JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr 6:26,107,412...26,108,135
Ensembl chr 6:26,107,412...26,108,135 		JBrowse link
G H2AX H2A.X variant histone located_in IEA Ensembl GO_REF:0000107 NCBI chr11:119,093,874...119,095,465
Ensembl chr11:119,093,874...119,095,465 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:150,698,060...150,720,895
Ensembl chr 1:150,698,060...150,720,895 		JBrowse link
G IHO1 interactor of HORMAD1 1 located_in
is_active_in		 IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:49,191,309...49,258,106
Ensembl chr 3:49,198,428...49,258,106 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IDA (PMID:16298999) BHF-UCL PMID:16298999 NCBI chr 1:169,921,329...170,085,184
Ensembl chr 1:169,921,326...170,085,208 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743 		JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing located_in IDA (PMID:12762840) HGNC-UCL PMID:12762840 NCBI chr 2:43,886,224...43,996,265
Ensembl chr 2:43,886,224...43,996,226 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:75,013,775...75,051,467
Ensembl chr14:75,013,769...75,051,532 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,796,882...75,913,242
Ensembl chr 1:75,796,882...75,913,242 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 part_of
located_in		 ISO (MGI:5644098|PMID:25474630) ComplexPortal
ComplexPortal		 PMID:25474630 GO_REF:0000114 MGI:5644098 NCBI chr12:6,494,102...6,531,955
Ensembl chr12:6,493,356...6,531,955 		JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 part_of
located_in		 ISO (PMID:25474630)
(MGI:5644098|PMID:25474630)		 ComplexPortal
ComplexPortal		 PMID:25474630 GO_REF:0000114 MGI:5644098 NCBI chr11:134,150,113...134,225,461
Ensembl chr11:134,150,113...134,225,504 		JBrowse link
G NCAPG non-SMC condensin I complex subunit G located_in
part_of		 IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr 4:17,810,979...17,844,865
Ensembl chr 4:17,810,979...17,844,865 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 located_in
part_of		 IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr 7:158,631,169...158,704,804
Ensembl chr 7:158,631,169...158,704,804 		JBrowse link
G NCAPH non-SMC condensin I complex subunit H located_in
part_of		 IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr 2:96,335,766...96,377,091
Ensembl chr 2:96,335,766...96,377,091 		JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 located_in
part_of		 IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr22:50,508,224...50,524,780
Ensembl chr22:50,508,224...50,524,780 		JBrowse link
G NEK2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:211,658,256...211,675,621
Ensembl chr 1:211,658,657...211,675,630 		JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 located_in IDA (PMID:11342549) UniProt PMID:11342549 NCBI chr 2:121,726,945...121,736,875
Ensembl chr 2:121,726,945...121,736,911 		JBrowse link
G NOL6 nucleolar protein 6 located_in ISS
IEA		 (PMID:11895476) UniProt
Ensembl		 PMID:11895476 GO_REF:0000107 NCBI chr 9:33,461,353...33,473,924
Ensembl chr 9:33,461,353...33,473,930 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) located_in TAS (PMID:8862517) PINC PMID:8862517 NCBI chr17:41,801,953...41,811,949
Ensembl chr17:41,801,947...41,812,604 		JBrowse link
G PSMC3IP PSMC3 interacting protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr17:42,572,310...42,577,831
Ensembl chr17:42,572,310...42,577,831 		JBrowse link
G RAD21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:116,845,934...116,874,776
Ensembl chr 8:116,845,934...116,874,776 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,226,044...1,255,876
Ensembl chr20:1,226,044...1,296,421 		JBrowse link
G RAD50 RAD50 double strand break repair protein is_active_in ISO
IBA		 sex vesicles/chromatin of XY bivalent RGD
GO_Central		 PMID:10855503 GO_REF:0000033 RGD:2300257 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349 		JBrowse link
G RAD51 RAD51 recombinase located_in
is_active_in		 IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr15:40,694,733...40,732,340
Ensembl chr15:40,694,774...40,732,340 		JBrowse link
G RCC1 regulator of chromosome condensation 1 located_in IDA (PMID:15014043) UniProt PMID:15014043 NCBI chr 1:28,506,043...28,538,989
Ensembl chr 1:28,505,943...28,539,300 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:24,172,080...24,180,923
Ensembl chr14:24,171,853...24,180,257 		JBrowse link
G RGS12 regulator of G protein signaling 12 located_in TAS (PMID:10869340) PINC PMID:10869340 NCBI chr 4:3,285,891...3,439,913
Ensembl chr 4:3,293,021...3,439,913 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog located_in IDA (PMID:19465021) UniProt PMID:19465021 NCBI chr 8:66,429,014...66,430,733
Ensembl chr 8:66,429,014...66,430,733 		JBrowse link
G RSPH1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:42,472,486...42,496,224
Ensembl chr21:42,472,486...42,496,246 		JBrowse link
G SHOC1 shortage in chiasmata 1 located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:111,686,171...111,794,937
Ensembl chr 9:111,686,171...111,795,008 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A located_in TAS (PMID:7757074) PINC PMID:7757074 NCBI chr  X:53,374,149...53,422,728
Ensembl chr  X:53,374,149...53,422,728 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:45,344,063...45,413,599
Ensembl chr22:45,344,063...45,413,619 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in
part_of		 IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr 9:104,088,263...104,141,419
Ensembl chr 9:104,094,260...104,141,419 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 located_in
part_of		 IEA
ISO		 Ensembl
ComplexPortal		 GO_REF:0000107 GO_REF:0000114 NCBI chr 3:160,399,650...160,434,953
Ensembl chr 3:160,399,274...160,434,954 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:100,177,724...100,219,334
Ensembl chr 7:100,177,563...100,214,387 		JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:38,734,734...38,755,998
Ensembl chr22:38,733,290...38,794,143 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase located_in TAS (PMID:10202156) PINC PMID:10202156 NCBI chr  X:48,695,554...48,709,016
Ensembl chr  X:48,695,554...48,709,016 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:114,854,088...114,995,370
Ensembl chr 1:114,854,863...114,995,370 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr12:101,728,648...101,739,462
Ensembl chr12:101,728,648...101,739,472 		JBrowse link
G TEX11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:70,511,227...70,908,711
Ensembl chr  X:70,528,940...70,908,711 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:133,600,238...133,661,941
Ensembl chr 3:133,598,175...133,662,380 		JBrowse link
G TTN titin located_in IDA (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802 		JBrowse link
G TUBG1 tubulin gamma 1 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:42,609,683...42,615,238
Ensembl chr17:42,609,641...42,615,238 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C14orf39 chromosome 14 open reading frame 39 located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:60,435,956...60,515,544
Ensembl chr14:60,396,469...60,515,543 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,124,011...62,153,169
Ensembl chr11:62,123,998...62,153,169 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in IEA
ISS		 (PMID:15944401) Ensembl
HGNC-UCL		 PMID:15944401 GO_REF:0000107 NCBI chr10:133,553,899...133,568,291
Ensembl chr10:133,553,901...133,569,835 		JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in
is_active_in		 ISS
IBA
IEA		 HGNC
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr19:12,898,786...12,919,293
Ensembl chr19:12,898,786...12,919,293 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 located_in
is_active_in		 IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr22:50,551,112...50,562,919
Ensembl chr22:50,551,112...50,562,919 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:114,854,088...114,995,370
Ensembl chr 1:114,854,863...114,995,370 		JBrowse link
G TEX11 testis expressed 11 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:70,511,227...70,908,711
Ensembl chr  X:70,528,940...70,908,711 		JBrowse link
G TEX12 testis expressed 12 located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:112,167,372...112,172,556
Ensembl chr11:112,167,372...112,172,556 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component part_of IEA
IBA
IDA		 (PMID:31776186), (PMID:36841485) InterPro
GO_Central
UniProt		 PMID:31776186 PMID:36841485 GO_REF:0000002 GO_REF:0000033 NCBI chr 7:47,963,288...47,979,615
Ensembl chr 7:47,963,288...47,979,615 		JBrowse link
G HUS1B HUS1 checkpoint clamp component B part_of IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:655,939...657,100
Ensembl chr 6:655,939...657,100 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease part_of IDA
IBA		 (PMID:31776186), (PMID:36841485) UniProt
GO_Central		 PMID:31776186 PMID:36841485 GO_REF:0000033 NCBI chr 5:34,905,260...34,915,504
Ensembl chr 5:34,905,260...34,918,989 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A part_of IEA
IBA
IDA		 (PMID:31776186), (PMID:36841485) InterPro
GO_Central
UniProt		 PMID:31776186 PMID:36841485 GO_REF:0000002 GO_REF:0000033 NCBI chr11:67,391,986...67,398,412
Ensembl chr11:67,317,871...67,398,410 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B part_of IEA
IBA		 UniProt
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr12:110,502,331...110,533,556
Ensembl chr12:110,501,655...110,533,556 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:75,013,775...75,051,467
Ensembl chr14:75,013,769...75,051,532 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase located_in IDA (PMID:10728666) UniProt PMID:10728666 NCBI chr15:90,717,346...90,816,166
Ensembl chr15:90,717,346...90,816,166 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IDA (PMID:9774970) MGI PMID:9774970 NCBI chr17:43,044,295...43,170,327
Ensembl chr17:43,044,295...43,170,245 		JBrowse link
G BRCA2 BRCA2 DNA repair associated located_in IDA (PMID:9774970) MGI PMID:9774970 NCBI chr13:32,315,077...32,400,268
Ensembl chr13:32,315,086...32,400,268 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:38,509,147...38,570,183
Ensembl chr22:38,518,948...38,570,204 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,124,011...62,153,169
Ensembl chr11:62,123,998...62,153,169 		JBrowse link
G KASH5 KASH domain containing 5 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr19:49,388,249...49,417,990
Ensembl chr19:49,388,219...49,417,990 		JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:77,650,274...77,927,045
Ensembl chr 6:77,650,274...77,927,045 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,226,044...1,255,876
Ensembl chr20:1,226,044...1,296,421 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA
IDA		 (PMID:9774970) Ensembl
MGI		 PMID:9774970 GO_REF:0000107 NCBI chr15:40,694,733...40,732,340
Ensembl chr15:40,694,774...40,732,340 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:24,172,080...24,180,923
Ensembl chr14:24,171,853...24,180,257 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:53,374,149...53,422,728
Ensembl chr  X:53,374,149...53,422,728 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:45,344,063...45,413,599
Ensembl chr22:45,344,063...45,413,619 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:110,567,695...110,606,048
Ensembl chr10:110,567,684...110,606,048 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:100,177,724...100,219,334
Ensembl chr 7:100,177,563...100,214,387 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:59,863,571...59,933,637
Ensembl chr20:59,863,564...59,933,655 		JBrowse link
G SYCP2L synaptonemal complex protein 2 like is_active_in
located_in		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:10,887,052...10,974,309
Ensembl chr 6:10,886,831...10,979,320 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISS UniProt GO_REF:0000024 NCBI chr12:101,728,648...101,739,462
Ensembl chr12:101,728,648...101,739,472 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,796,882...75,913,242
Ensembl chr 1:75,796,882...75,913,242 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA
ISS		 InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr14:20,311,370...20,333,279
Ensembl chr14:20,311,368...20,333,312 		JBrowse link
G FAM9A family with sequence similarity 9 member A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:8,790,795...8,801,383
Ensembl chr  X:8,790,795...8,801,383 		JBrowse link
G FAM9B family with sequence similarity 9 member B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:9,024,232...9,034,127
Ensembl chr  X:9,024,232...9,295,682 		JBrowse link
G FAM9C family with sequence similarity 9 member C is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:13,035,617...13,044,620
Ensembl chr  X:13,035,617...13,044,682 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:73,328,161...73,358,625
Ensembl chr 7:73,328,161...73,358,637 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:150,698,060...150,720,895
Ensembl chr 1:150,698,060...150,720,895 		JBrowse link
G HORMAD2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,077,732...30,207,456
Ensembl chr22:30,080,464...30,177,075 		JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:64,535,905...64,543,237
Ensembl chr14:64,535,905...64,546,173 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,124,011...62,153,169
Ensembl chr11:62,123,998...62,153,169 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:75,013,775...75,051,467
Ensembl chr14:75,013,769...75,051,532 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,796,882...75,913,242
Ensembl chr 1:75,796,882...75,913,242 		JBrowse link
G MSH5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chr 6:31,740,005...31,762,676
Ensembl chr 6:31,739,677...31,762,676 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) located_in ISO
TAS		 (PMID:8862517) RGD
PINC		 PMID:1363622 PMID:8862517 RGD:633987 NCBI chr17:41,801,953...41,811,949
Ensembl chr17:41,801,947...41,812,604 		JBrowse link
G PLK1 polo like kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,678,889...23,690,367
Ensembl chr16:23,677,656...23,690,367 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:24,172,080...24,180,923
Ensembl chr14:24,171,853...24,180,257 		JBrowse link
G RNF212 ring finger protein 212 located_in
is_active_in		 IEA
IBA
ISS		 InterPro
GO_Central
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:1,056,251...1,113,710
Ensembl chr 4:1,056,250...1,113,564 		JBrowse link
G RNF212B ring finger protein 212B located_in
is_active_in		 IEA
ISS
IBA		 InterPro
UniProt
Ensembl
GO_Central		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:23,185,336...23,273,477
Ensembl chr14:23,185,316...23,273,477 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:53,374,149...53,422,728
Ensembl chr  X:53,374,149...53,422,728 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:45,344,063...45,413,599
Ensembl chr22:45,344,063...45,413,619 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr10:110,567,695...110,606,048
Ensembl chr10:110,567,684...110,606,048 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in TAS
IEA		 (PMID:10698974) PINC
Ensembl		 PMID:10698974 GO_REF:0000107 NCBI chr 7:100,177,724...100,219,334
Ensembl chr 7:100,177,563...100,214,387 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:133,553,899...133,568,291
Ensembl chr10:133,553,901...133,569,835 		JBrowse link
G SYCE1L synaptonemal complex central element protein 1 like located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr16:77,199,408...77,213,215
Ensembl chr16:77,199,408...77,213,215 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
ISS
IEA		 RGD
UniProt
Ensembl
InterPro		 PMID:8660935 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 RGD:9686370 NCBI chr 1:114,854,088...114,995,370
Ensembl chr 1:114,854,863...114,995,370 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO
IEA
NAS		 (PMID:10341103) RGD
Ensembl
UniProt		 PMID:9592139 PMID:10341103 GO_REF:0000107 RGD:69387 NCBI chr20:59,863,571...59,933,637
Ensembl chr20:59,863,564...59,933,655 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in
is_active_in		 IDA
IBA		 (PMID:9774970) MGI
GO_Central		 PMID:9774970 GO_REF:0000033 NCBI chr12:101,728,648...101,739,462
Ensembl chr12:101,728,648...101,739,472 		JBrowse link
G SYN1 synapsin I located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:47,571,901...47,619,857
Ensembl chr  X:47,571,901...47,619,857 		JBrowse link
G TEX11 testis expressed 11 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:70,511,227...70,908,711
Ensembl chr  X:70,528,940...70,908,711 		JBrowse link
G TEX12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:112,167,372...112,172,556
Ensembl chr11:112,167,372...112,172,556 		JBrowse link
G UBE2I ubiquitin conjugating enzyme E2 I located_in TAS (PMID:8610150) PINC PMID:8610150 NCBI chr16:1,309,152...1,327,017
Ensembl chr16:1,291,444...1,327,018 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:100,177,724...100,219,334
Ensembl chr 7:100,177,563...100,214,387 		JBrowse link
G SYCP1 synaptonemal complex protein 1 is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:1464329 GO_REF:0000033 GO_REF:0000107 RGD:729937 NCBI chr 1:114,854,088...114,995,370
Ensembl chr 1:114,854,863...114,995,370 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chr12:101,728,648...101,739,462
Ensembl chr12:101,728,648...101,739,472 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20783
    cellular anatomical entity 20397
      organelle 15610
        non-membrane-bounded organelle 6209
          intracellular non-membrane-bounded organelle 6209
            chromosome 2093
              nuclear chromosome 250
                condensed nuclear chromosome 87
                  checkpoint clamp complex 5
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 45
Path 2
Term Annotations click to browse term
  cellular_component 20783
    cellular anatomical entity 20397
      organelle 15610
        intracellular organelle 14648
          intracellular membrane-bounded organelle 13460
            nucleus 8644
              nuclear lumen 5174
                nuclear chromosome 250
                  condensed nuclear chromosome 87
                    checkpoint clamp complex 5
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 45
paths to the root